|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr25 | genome | chr25:197067..200106 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00710.2 vs.
Match: XP_005854209.1 (UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Nannochloropsis gaditana CCMP526]; EKU22148.1 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 435.3 bits (1118), Expect = 1.700e-118 Identity = 221/258 (85.66%), Postives = 235/258 (91.09%), Query Frame = 0
Query: 49 LLVLPLKLLLDLPADAFGREPANARKYILEQLGIAAAGFFGVVHMVNVMGDYCRRKQQTGMDLCKKGTPLGEVSIPESQGLAPGIIYLVIIIACQMLYTQSPESLANYNSSLLSICFMLFLGFVDDVLDLPWRYKLILPPIATLPLLCSYSGSTSVIIPKPLRSLLWSNSSSSSSSGGLTGLGHLLSVFVTVDAQARGKIVDLGLFFMIYMALLAVFCTNAINIYAGINGLEAGQSLVIGVGILVFKLWEILYENDGK 307
+L PLKLLLD+P DAFGRE ANARKYILEQLG+AAAG GVV+MVNVMG+YCRRKQQTG DLCKKGTPLGEV IPESQGLAPGIIYL+IIIACQ+LYTQSPESLANYNSSLLSICFMLFLGFVDDVLDLPWR+KLILPPIATLPLLCSYSGSTSVIIPKPLR LLW + S GGLT LG LLS+FVT+D QA+GKIV+LGLFFMIYMALLAVFCTNAINIYAGINGLEAGQSLVI VG+L F L EILYENDGK
Sbjct: 1 MLTAPLKLLLDVPVDAFGRESANARKYILEQLGLAAAGCSGVVYMVNVMGEYCRRKQQTGKDLCKKGTPLGEVPIPESQGLAPGIIYLIIIIACQLLYTQSPESLANYNSSLLSICFMLFLGFVDDVLDLPWRFKLILPPIATLPLLCSYSGSTSVIIPKPLRGLLWRH----SDGGGLTPLGQLLSLFVTIDGQAQGKIVELGLFFMIYMALLAVFCTNAINIYAGINGLEAGQSLVIAVGVLAFTLTEILYENDGK 254
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00710.2 ID=NO25G00710.2|Name=NO25G00710.2|organism=Nannochloropsis oceanica|type=mRNA|length=2905bp
AAAGACAGGATGGCGCCTGCCTTACGCAGTAGCAAAGCGAAGAATGGGAA
CAACATGCCTTCCTCTTCTAGCCCTTCGGCCTCCACCACCCCATTCATCC
TCCCCTCTGCAGCATCATCCTACCAGCTGTGGGACGCTTTCTACGTGCTC
TTGCTCTTGGTTCTGCCCCTCAAGCTCTTGCTTGATCTACCCGCAGATGC
ATTTGGACGAGAACCAGCCAATGCTCGCAAATATATCTTGGAGCAATTGG
GCATTGCGGCCGCGGGATTCTTTGGGGTGGTGCACATGGTGAATGTGATG
GGGGATTACTGCCGACGGAAGCAGCAAACCGGCATGGATCTTTGCAAGAA
AGGCACTCCTTTAGGTGAAGTATCTATTCCAGAATCGCAGGGCTTGGCAC
CGGGTATAATTTATTTGGTGATCATCATTGCGTGTCAGATGCTTTACACC
CAGAGTCCCGAGAGTCTGGCTAATTACAACTCGTCCCTGCTGTCGATTTG
CTTCATGCTCTTCTTAGGGTTTGTCGATGATGTGCTGGACCTCCCGTGGC
GGTACAAGCTAATTCTCCCGCCCATCGCCACTCTACCCCTCCTCTGCTCG
TACAGCGGCTCCACCTCCGTCATCATCCCCAAGCCCCTGCGCTCCCTCCT
CTGGAGCAACAGCAGCAGCAGCAGCAGCAGCGGTGGGCTGACGGGACTAG
GGCACTTGTTGAGTGTATTTGTGACGGTGGACGCCCAGGCTAGAGGGAAG
ATAGTGGACTTGGGCTTGTTTTTCATGATATACATGGCATTGCTCGCTGT
CTTTTGTACGAATGCGATTAACATATACGCGGGGATCAATGGCTTGGAGG
CGGGACAGAGTCTTGTGATTGGGGTGGGGATTCTGGTTTTCAAATTGTGG
GAAATTCTGTATGAAAATGATGGGAAAGGTAAGTCAAATACAGGAATGAG
AGAGACAGAGAAGTAAAGCTTATAAGAGTCTCACAAGCCTCCTCTCCCTC
CTTTCTCCCCTCCCGCCTTTCCTTCTTCCTAAAGCGGGACCCGCCCAAGT
GCTATCCCTCACCCTCATCCTCCCCTTCATCAGCGTCGTCCTCGGCCTCC
TCTACCACAACTTCTACCCCGCTCGTGCCTTTGTCGGTGACACCTTCTGC
TATTTTGCCGGGATGACCTTCGCCGTCATCGGGGTACACGGACATTTTTC
TAAAACCCTCTGCTTCCTCTTCCTTCCCCAAATCGCGAATTTCCTCCTCT
CCCTCCCTCAGCTTTTCAAGCTGGTCCCGTGTCCTCGTCACAGGCTACCA
CGGTTTGACCCTGCCCTTGGGCGGCTCTTGCCTTCCATATGTCCATGTGG
GAAGGGGGACTACGTATGGGTGAAGCGCTTGTTTGGCTTGTCTCCTGAAA
ATGATTTTTTCATAAATCTGACTTTAATTAATGCGGTCTTGAGACTTTTG
GGGCCATTGCACGAGAGGACTTTGTGCCTGCTGCTGTTGCTGTTACAAGT
GGTTTGTTGTCTTGGCACCATGTTTTTGCGTTTTCACTTGGCGCATTTGT
TTGCGTGAGGGAGAATGGGACAGGAGAGAAACAGGGAGACAGGGAAGGAG
GATTAGACTACGTAACATCATCAAGCCTTGATAAGTATAAATCGTCTTTA
TGCGTGCGAAAGGAGGTGGCTGTCTCTACCCCCCATTGAAAGGTCAGGAT
TTCTGGTTGTTAGAACTCGATGTGCTTTTTTCCCCTTGAACTTGTTTCCT
CTCCTCTTTCGCTTGATGCTCCTTCGCTGGTATGTATTATTATTGTTGGT
GATGGATATGTGTGTTTTCTAAATCCACCTTCTGCCTGCTACCTGAAAAG
ACTTTATTACTATTTGTATGCCCATTCTTTTACTTCTGCTGCTGCTGCTG
CTACCTACAACTGTGAATGCTGCGCTTCTCCAACCTGGAATCTACGCGTA
TATGCTTCATAACGTAGACCCACATAGACATAGAATAACAAGCATTGTTC
TTTCCCTCCCTTCCTCCCTTCTCCATCCTCTACCTCCTCTCGTGATTAAC
CCATACAAGACTCACGTACGTCAAGCCCCTGAACACCACCATGTTCAACA
ACAAAATCGGCACCGTGAACCATTTCGAGAACCCTTCAAAACCCAGGCTT
TCCACCATAGTCTGATACGGATCGGGACTGTAATACACGGCCGGTAGATC
CCGATAACTCACCCTCGCGTTTCCCTCGAACTCATTAATCACCAGTCCCT
GAAAAGCCCACCTCGCGAAGCTCACATCCGGGCACCACGTCCCAAGCCAG
GAAGGAAGGGAGGGCAAGCGCACGATAAACCCGGCGAAGGAGGAAAATAT
GAAGAGGGTGGCGGGAAAGACGGCCACGGCCGTTTGGGGACTATGCAGGG
TAATGGAGAGGAGTTGGCAGAAGAAGAGGGCGCAGAGGGAGCAGAGCATG
ATGATCAGATAGAAGTACCCAAAACAGGCAAAGCTGTTGTGGAGCCCGGA
CATGGTGTAGACGATGGCACTGTACAGCAGCGTGTTGAGGATGTTTTGGG
GGACGTAGGAAGCGGCACACGTCATCCAGTAGGAGAAAGGACCGTAGACA
TGCGCCCCCTTTTCGCGGTAGTAAAGCAATCGATCCTCGTGCACTCCGGG
AATCGTCTGCTGGTTCCCAACCATCACAAACATGATGGCAAAGAACAGCA
GGCTCAACCTGCTTTGAATCGCCGTCGATGCTACTTGCCAATATAAACTC
CCATAAAACAATGCCACCAGGATATGCCGCAACACGCCCACAACCACCGG
CCGTCGATTCCGCCTCATTTTCAAAAACTGTCTTTTCACCAGAATGTGAT
TGATCTGGAGCATGTCCCTTGGGAACAGCCGTCCCTCCAACCCCGCCCCC
GCCTC back to topprotein sequence of NO25G00710.2 >NO25G00710.2-protein ID=NO25G00710.2-protein|Name=NO25G00710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MAPALRSSKAKNGNNMPSSSSPSASTTPFILPSAASSYQLWDAFYVLLLL
VLPLKLLLDLPADAFGREPANARKYILEQLGIAAAGFFGVVHMVNVMGDY
CRRKQQTGMDLCKKGTPLGEVSIPESQGLAPGIIYLVIIIACQMLYTQSP
ESLANYNSSLLSICFMLFLGFVDDVLDLPWRYKLILPPIATLPLLCSYSG
STSVIIPKPLRSLLWSNSSSSSSSGGLTGLGHLLSVFVTVDAQARGKIVD
LGLFFMIYMALLAVFCTNAINIYAGINGLEAGQSLVIGVGILVFKLWEIL
YENDGKGKSNTGMRETEK* back to topmRNA from alignment at chr25:197067..200106- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00710.2 ID=NO25G00710.2|Name=NO25G00710.2|organism=Nannochloropsis oceanica|type=mRNA|length=3040bp|location=Sequence derived from alignment at chr25:197067..200106- (Nannochloropsis oceanica)
AAAGACAGGATGGCGCCTGCCTTACGCAGTAGCAAAGCGAAGAATGGGAA
CAACATGCCTTCCTCTTCTAGCCCTTCGGCCTCCACCACCCCATTCATCC
TCCCCTCTGCAGCATCATCCTACCAGCTGTGGGACGCTTTCTACGTGCTC
TTGCTCTTGGTTCTGCCCCTCAAGCTCTTGCTTGATCTACCCGCAGATGC
ATTTGGACGAGAACCAGCCAATGCTCGCAAATATATCTTGGAGCAATTGG
GCATTGCGGCCGCGGGATTCTTTGGGGTGGTGCACATGGTGAATGTGATG
GGGGATTACTGCCGACGGAAGCAGCAAACCGGCATGGATCTTTGCAAGAA
AGGCACTCCTTTAGGTGAAGTATCTATTCCAGAATCGCAGGGCTTGGCAC
CGGGTATAATTTATTTGGTGATCATCATTGCGTGTCAGATGCTTTACACC
CAGAGTCCCGAGAGTCTGGCTAATTACAACTCGTCCCTGCTGTCGATTTG
CTTCATGCTCTTCTTAGGGTTTGTCGATGATGTGCTGGTACGTACATTCT
TCGACTTTTCATTCTACTGCTTTTATGGCACGTAGTTTGTTTAATGCCTT
CTTTCCTTATTCTGCTCGCCCTCCGCATCCATAATCCCTCTCCCCTCGCT
CGCTTGCTCCATCGCTCACTAGGACCTCCCGTGGCGGTACAAGCTAATTC
TCCCGCCCATCGCCACTCTACCCCTCCTCTGCTCGTACAGCGGCTCCACC
TCCGTCATCATCCCCAAGCCCCTGCGCTCCCTCCTCTGGAGCAACAGCAG
CAGCAGCAGCAGCAGCGGTGGGCTGACGGGACTAGGGCACTTGTTGAGTG
TATTTGTGACGGTGGACGCCCAGGCTAGAGGGAAGATAGTGGACTTGGGC
TTGTTTTTCATGATATACATGGCATTGCTCGCTGTCTTTTGTACGAATGC
GATTAACATATACGCGGGGATCAATGGCTTGGAGGCGGGACAGAGTCTTG
TGATTGGGGTGGGGATTCTGGTTTTCAAATTGTGGGAAATTCTGTATGAA
AATGATGGGAAAGGTAAGTCAAATACAGGAATGAGAGAGACAGAGAAGTA
AAGCTTATAAGAGTCTCACAAGCCTCCTCTCCCTCCTTTCTCCCCTCCCG
CCTTTCCTTCTTCCTAAAGCGGGACCCGCCCAAGTGCTATCCCTCACCCT
CATCCTCCCCTTCATCAGCGTCGTCCTCGGCCTCCTCTACCACAACTTCT
ACCCCGCTCGTGCCTTTGTCGGTGACACCTTCTGCTATTTTGCCGGGATG
ACCTTCGCCGTCATCGGGGTACACGGACATTTTTCTAAAACCCTCTGCTT
CCTCTTCCTTCCCCAAATCGCGAATTTCCTCCTCTCCCTCCCTCAGCTTT
TCAAGCTGGTCCCGTGTCCTCGTCACAGGCTACCACGGTTTGACCCTGCC
CTTGGGCGGCTCTTGCCTTCCATATGTCCATGTGGGAAGGGGGACTACGT
ATGGGTGAAGCGCTTGTTTGGCTTGTCTCCTGAAAATGATTTTTTCATAA
ATCTGACTTTAATTAATGCGGTCTTGAGACTTTTGGGGCCATTGCACGAG
AGGACTTTGTGCCTGCTGCTGTTGCTGTTACAAGTGGTTTGTTGTCTTGG
CACCATGTTTTTGCGTTTTCACTTGGCGCATTTGTTTGCGTGAGGGAGAA
TGGGACAGGAGAGAAACAGGGAGACAGGGAAGGAGGATTAGACTACGTAA
CATCATCAAGCCTTGATAAGTATAAATCGTCTTTATGCGTGCGAAAGGAG
GTGGCTGTCTCTACCCCCCATTGAAAGGTCAGGATTTCTGGTTGTTAGAA
CTCGATGTGCTTTTTTCCCCTTGAACTTGTTTCCTCTCCTCTTTCGCTTG
ATGCTCCTTCGCTGGTATGTATTATTATTGTTGGTGATGGATATGTGTGT
TTTCTAAATCCACCTTCTGCCTGCTACCTGAAAAGACTTTATTACTATTT
GTATGCCCATTCTTTTACTTCTGCTGCTGCTGCTGCTACCTACAACTGTG
AATGCTGCGCTTCTCCAACCTGGAATCTACGCGTATATGCTTCATAACGT
AGACCCACATAGACATAGAATAACAAGCATTGTTCTTTCCCTCCCTTCCT
CCCTTCTCCATCCTCTACCTCCTCTCGTGATTAACCCATACAAGACTCAC
GTACGTCAAGCCCCTGAACACCACCATGTTCAACAACAAAATCGGCACCG
TGAACCATTTCGAGAACCCTTCAAAACCCAGGCTTTCCACCATAGTCTGA
TACGGATCGGGACTGTAATACACGGCCGGTAGATCCCGATAACTCACCCT
CGCGTTTCCCTCGAACTCATTAATCACCAGTCCCTGAAAAGCCCACCTCG
CGAAGCTCACATCCGGGCACCACGTCCCAAGCCAGGAAGGAAGGGAGGGC
AAGCGCACGATAAACCCGGCGAAGGAGGAAAATATGAAGAGGGTGGCGGG
AAAGACGGCCACGGCCGTTTGGGGACTATGCAGGGTAATGGAGAGGAGTT
GGCAGAAGAAGAGGGCGCAGAGGGAGCAGAGCATGATGATCAGATAGAAG
TACCCAAAACAGGCAAAGCTGTTGTGGAGCCCGGACATGGTGTAGACGAT
GGCACTGTACAGCAGCGTGTTGAGGATGTTTTGGGGGACGTAGGAAGCGG
CACACGTCATCCAGTAGGAGAAAGGACCGTAGACATGCGCCCCCTTTTCG
CGGTAGTAAAGCAATCGATCCTCGTGCACTCCGGGAATCGTCTGCTGGTT
CCCAACCATCACAAACATGATGGCAAAGAACAGCAGGCTCAACCTGCTTT
GAATCGCCGTCGATGCTACTTGCCAATATAAACTCCCATAAAACAATGCC
ACCAGGATATGCCGCAACACGCCCACAACCACCGGCCGTCGATTCCGCCT
CATTTTCAAAAACTGTCTTTTCACCAGAATGTGATTGATCTGGAGCATGT
CCCTTGGGAACAGCCGTCCCTCCAACCCCGCCCCCGCCTC back to topCoding sequence (CDS) from alignment at chr25:197067..200106- >NO25G00710.2 ID=NO25G00710.2|Name=NO25G00710.2|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr25:197067..200106- (Nannochloropsis oceanica)
ATGGCGCCTGCCTTACGCAGTAGCAAAGCGAAGAATGGGAACAACATGCC
TTCCTCTTCTAGCCCTTCGGCCTCCACCACCCCATTCATCCTCCCCTCTG
CAGCATCATCCTACCAGCTGTGGGACGCTTTCTACGTGCTCTTGCTCTTG
GTTCTGCCCCTCAAGCTCTTGCTTGATCTACCCGCAGATGCATTTGGACG
AGAACCAGCCAATGCTCGCAAATATATCTTGGAGCAATTGGGCATTGCGG
CCGCGGGATTCTTTGGGGTGGTGCACATGGTGAATGTGATGGGGGATTAC
TGCCGACGGAAGCAGCAAACCGGCATGGATCTTTGCAAGAAAGGCACTCC
TTTAGGTGAAGTATCTATTCCAGAATCGCAGGGCTTGGCACCGGGTATAA
TTTATTTGGTGATCATCATTGCGTGTCAGATGCTTTACACCCAGAGTCCC
GAGAGTCTGGCTAATTACAACTCGTCCCTGCTGTCGATTTGCTTCATGCT
CTTCTTAGGGTTTGTCGATGATGTGCTGGACCTCCCGTGGCGGTACAAGC
TAATTCTCCCGCCCATCGCCACTCTACCCCTCCTCTGCTCGTACAGCGGC
TCCACCTCCGTCATCATCCCCAAGCCCCTGCGCTCCCTCCTCTGGAGCAA
CAGCAGCAGCAGCAGCAGCAGCGGTGGGCTGACGGGACTAGGGCACTTGT
TGAGTGTATTTGTGACGGTGGACGCCCAGGCTAGAGGGAAGATAGTGGAC
TTGGGCTTGTTTTTCATGATATACATGGCATTGCTCGCTGTCTTTTGTAC
GAATGCGATTAACATATACGCGGGGATCAATGGCTTGGAGGCGGGACAGA
GTCTTGTGATTGGGGTGGGGATTCTGGTTTTCAAATTGTGGGAAATTCTG
TATGAAAATGATGGGAAAGGTAAGTCAAATACAGGAATGAGAGAGACAGA
GAAGTAA back to top
|