NO25G00610.2, NO25G00610.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00610.2
Unique NameNO25G00610.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1752
Alignment locationchr25:171671..173582 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:171671..173582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00610.2 vs.
Match: EWM21611.1 (BRO1 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 438.7 bits (1127), Expect = 1.400e-119
Identity = 216/303 (71.29%), Postives = 260/303 (85.81%), Query Frame = 0 
Query:    1 MQFQWTSVLNARNSPQEYKTQEVFIFEMAMLLSSKALALSNQASLLLSSSDPSCSDNHYADAAILLKLAGGVYIALAHDFLPRWKETPENASGRHPETSEGVAMALVDLVSAQAQTMYLAKGLNVGNVPEGTLAKLAVTVVERFEKCVSNFRARAGTHFGRLDPEFLGYLTFMPALFRALAYRFLAVAYWKKSDHGTAIGLILQAQALLKPRADGVSSGLPSMDDSRYLSKFKPQVEILRKEVNGMLTSWNQDNNMIYFAAVVDAMSLPPLPAGANMVQLTKYDYMSSSPPILFSEPAEAKTS 304
            MQFQWTS LNA+ SP EYKTQEVFIFEMAM+L+SKALA  NQA+   +S DPS   + YA+AA LLK AGGV++ALAHDFLPRWKETP+NA+GRHPETSEGVAMALVDLVSAQAQ MY+AKG+    VP GTLAKL+VTV++RFEKC+SNF+ARA  H  R+DP+FL YL FMPAL+RALAYRFLA+A+W+K DHGTAIGL+LQA+ +LK R DGVSSGL  +++SR+LS FKPQ+EILR+EV+ MLTSW +DN+ IYFA +VD+ SLPPLP GANMV +TKY+Y+S+ PPILF+E AEAK+S
Sbjct:  108 MQFQWTSALNAQASPSEYKTQEVFIFEMAMVLASKALAQINQAA---NSIDPSA--DRYAEAATLLKSAGGVFLALAHDFLPRWKETPDNAAGRHPETSEGVAMALVDLVSAQAQAMYVAKGVFAQTVPPGTLAKLSVTVMDRFEKCISNFKARASAHLARVDPDFLSYLIFMPALYRALAYRFLAIAHWEKEDHGTAIGLLLQAEIILKARRDGVSSGLSGIEESRFLSAFKPQLEILRREVSSMLTSWKRDNSTIYFAGIVDSASLPPLPTGANMVSITKYEYVSNLPPILFAEAAEAKSS 405
The following BLAST results are available for this feature:
BLAST of NO25G00610.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21611.11.400e-11971.29BRO1 domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00610NO25G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00610.2NO25G00610.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00610.2.cds1NO25G00610.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00610.2.cds2NO25G00610.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00610.2 ID=NO25G00610.2|Name=NO25G00610.2|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp
GAGGCGTTTGGAGACGCCAGTCAACGTTTGGAACTTCCACGCAAATGTCC
TCGCGGTCCTTGCGTTTATTATGAACGTGGTGTTTCTTTATGCGACCGCA
CCATGTCCATGTTTTGCGTGCGGCCTTGGCGCGGCAATGACACTCCGTCT
CACGACTATCTACTTTCCTTGGTTCACCCGCAATGTGCATAGCCAGACTC
ATACCTTCCGCTCCTTACAGGGCACGCCACTAATAAATGGCCTCTTTCAT
CCCGGACGGGGCCGAAGACGCCCTCCTAACCCTCGCCACCCTCGTATACC
CTTTCCCCTTGCCTAAGAGCAAGAAAACCGGCGCCGCATTCGCCACGGCC
TTCTCGGCCACGGGCACTCCGGCCGCCACCACGACAACCATGGAAAGCAT
CGACAAATTGCGCGAGGAGTTTGTGGACGAGGTTTGCAAGCCCAAACCTA
GCATGGCGGCCGTGAGTAGTGCGGCAGATCGATATGCCCCACAGTTGAAT
AGGATAATTCAGTCGATTGACGCAAGTGTGAGTAAATGTTATAACTGGTG
GTGTCTGGGGGCTCGACCGCAGGGAAAGGAGGGAGGAGGGATGTGGGAGG
GATTGGGCGGAGGAACAGAGGAAAACTCATACCTTTTTGCTGAACCTCCT
CTTTTTCACCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCTC
TCCCTCCTTTCCCTTCTTGTACTTCACCAGCACGACCCCGTCCGCCTCAC
AAAACGCATGCAGTTCCAATGGACGTCCGTCCTTAACGCCCGCAACTCCC
CCCAAGAGTACAAAACCCAAGAAGTCTTCATTTTCGAGATGGCCATGCTC
CTCTCCTCCAAGGCTCTCGCCCTGTCCAACCAAGCCTCTCTCCTCCTCTC
CTCCTCGGATCCATCTTGCTCCGACAACCACTACGCGGACGCCGCCATTT
TGCTCAAATTAGCCGGGGGGGTCTACATCGCCCTGGCCCACGATTTTCTC
CCCCGCTGGAAAGAAACGCCCGAGAACGCCTCAGGCCGCCATCCAGAGAC
TTCGGAAGGGGTGGCCATGGCCCTCGTAGACCTTGTCTCCGCCCAGGCCC
AAACCATGTACCTAGCCAAGGGTCTTAATGTTGGGAACGTACCTGAAGGG
ACGCTCGCGAAGCTCGCCGTGACGGTGGTGGAGAGGTTCGAAAAGTGTGT
GAGCAATTTTAGGGCACGTGCCGGAACTCATTTTGGCAGGCTGGATCCGG
AATTTCTCGGGTATTTGACTTTCATGCCCGCTCTCTTTCGCGCCCTCGCC
TACCGTTTCCTAGCCGTGGCTTACTGGAAGAAGAGCGATCACGGTACGGC
GATCGGCCTCATTCTCCAAGCACAGGCTTTGCTGAAGCCCCGCGCAGATG
GAGTATCTTCAGGTTTACCTTCTATGGACGACTCTCGCTATTTGTCTAAA
TTTAAGCCTCAGGTGGAGATATTGAGGAAGGAGGTGAACGGTATGCTCAC
CTCTTGGAATCAAGACAATAACATGATTTATTTTGCGGCGGTTGTGGATG
CCATGAGCCTTCCACCTTTGCCGGCAGGAGCGAATATGGTCCAACTAACG
AAGTATGATTATATGTCGAGCTCGCCGCCCATTTTGTTCTCGGAACCCGC
TGAAGCCAAGACGTCATAATAGGGATGAAGGGGAGGGAGAGATGATGTAG
ATTAGGGTGTATAATTGCTTGATAAGTAAAGTAAGAAATGTATGCGTTCA
TC
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protein sequence of NO25G00610.2

>NO25G00610.2-protein ID=NO25G00610.2-protein|Name=NO25G00610.2|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MQFQWTSVLNARNSPQEYKTQEVFIFEMAMLLSSKALALSNQASLLLSSS
DPSCSDNHYADAAILLKLAGGVYIALAHDFLPRWKETPENASGRHPETSE
GVAMALVDLVSAQAQTMYLAKGLNVGNVPEGTLAKLAVTVVERFEKCVSN
FRARAGTHFGRLDPEFLGYLTFMPALFRALAYRFLAVAYWKKSDHGTAIG
LILQAQALLKPRADGVSSGLPSMDDSRYLSKFKPQVEILRKEVNGMLTSW
NQDNNMIYFAAVVDAMSLPPLPAGANMVQLTKYDYMSSSPPILFSEPAEA
KTS*
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mRNA from alignment at chr25:171671..173582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00610.2 ID=NO25G00610.2|Name=NO25G00610.2|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at chr25:171671..173582- (Nannochloropsis oceanica)
GAGGCGTTTGGAGACGCCAGTCAACGTTTGGAACTTCCACGCAAATGTCC
TCGCGGTCCTTGCGTTTATTATGAACGTGGTGTTTCTTTATGCGACCGCA
CCATGTCCATGTTTTGCGTGCGGCCTTGGCGCGGCAATGACACTCCGTCT
CACGACTATCTACTTTCCTTGGTTCACCCGCAATGTGCATAGCCAGACTC
ATACCTTCCGCTCCTTACAGGGCACGCCACTAATAAATGGCCTCTTTCAT
CCCGGACGGGGCCGAAGACGCCCTCCTAACCCTCGCCACCCTCGTATACC
CTTTCCCCTTGCCTAAGAGCAAGAAAACCGGCGCCGCATTCGCCACGGCC
TTCTCGGCCACGGGCACTCCGGCCGCCACCACGACAACCATGGAAAGCAT
CGACAAATTGCGCGAGGAGTTTGTGGACGAGGTTTGCAAGCCCAAACCTA
GCATGGCGGCCGTGAGTAGTGCGGCAGATCGATATGCCCCACAGTTGAAT
AGGATAATTCAGTCGATTGACGCAAGTGTGAGTAAATGTTATAACTGGTG
GTGTCTGGGGGCTCGACCGCAGGGAAAGGAGGGAGGAGGGATGTGGGAGG
GATTGGGCGGAGGAACAGAGGAAAACTCATACCTTTTTGCTGAACCTCCT
CTTTTTCACCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCTC
TCCCTCCTTTCCCTTCTTGTACTTCACCAGCACGACCCCGTCCGCCTCAC
AAAACGCATGCAGTTCCAATGGACGTCCGTCCTTAACGCCCGCAACTCCC
CCCAAGAGTACAAAACCCAAGAAGTCTTCATTTTCGAGATGGCCATGCTC
CTCTCCTCCAAGGCTCTCGCCCTGTCCAACCAAGCCTCTCTCCTCCTCTC
CTCCTCGGATCCATCTTGCTCCGACAACCACTACGCGGACGCCGCCATTT
TGCTCAAATTAGCCGGGGGGGTCTACATCGCCCTGGCCCACGATTTTCTC
CCCCGCTGGAAAGAAACGCCCGAGAACGCCTCAGGCCGCCATCCAGAGAC
TTCGGAAGGGGTGGCCATGGCCCTCGTAGACCTTGTCTCCGCCCAGGCCC
AAACCATGTACCTAGCCAAGGGTCTTAATGTTGGGAACGTACCTGAAGGG
ACGCTCGCGAAGCTCGCCGTGACGGTGGTGGAGAGGTTCGAAAAGTGTGT
GAGCAATTTTAGGGCACGTGCCGGAACTCATTTTGGCAGGCTGGATCCGG
AATTTCTCGGGTATTTGACTTTCATGCCGTGAGTAGGAGAGAGTGAGGGA
TGGAGGAGAGGGTTTGTATTTTGTTCATCTGAAACCTGCAGCCGTGTTGT
TCGATTTTCCCTTACCTCCCTCAGAAGTCCACCACTCACCACCTTCTCAA
CTTTTCATGCCTCCCTTCCTGCTTCCCTCCCTACACAGCGCTCTCTTTCG
CGCCCTCGCCTACCGTTTCCTAGCCGTGGCTTACTGGAAGAAGAGCGATC
ACGGTACGGCGATCGGCCTCATTCTCCAAGCACAGGCTTTGCTGAAGCCC
CGCGCAGATGGAGTATCTTCAGGTTTACCTTCTATGGACGACTCTCGCTA
TTTGTCTAAATTTAAGCCTCAGGTGGAGATATTGAGGAAGGAGGTGAACG
GTATGCTCACCTCTTGGAATCAAGACAATAACATGATTTATTTTGCGGCG
GTTGTGGATGCCATGAGCCTTCCACCTTTGCCGGCAGGAGCGAATATGGT
CCAACTAACGAAGTATGATTATATGTCGAGCTCGCCGCCCATTTTGTTCT
CGGAACCCGCTGAAGCCAAGACGTCATAATAGGGATGAAGGGGAGGGAGA
GATGATGTAGATTAGGGTGTATAATTGCTTGATAAGTAAAGTAAGAAATG
TATGCGTTCATC
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Coding sequence (CDS) from alignment at chr25:171671..173582-

>NO25G00610.2 ID=NO25G00610.2|Name=NO25G00610.2|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr25:171671..173582- (Nannochloropsis oceanica)
ATGCAGTTCCAATGGACGTCCGTCCTTAACGCCCGCAACTCCCCCCAAGA
GTACAAAACCCAAGAAGTCTTCATTTTCGAGATGGCCATGCTCCTCTCCT
CCAAGGCTCTCGCCCTGTCCAACCAAGCCTCTCTCCTCCTCTCCTCCTCG
GATCCATCTTGCTCCGACAACCACTACGCGGACGCCGCCATTTTGCTCAA
ATTAGCCGGGGGGGTCTACATCGCCCTGGCCCACGATTTTCTCCCCCGCT
GGAAAGAAACGCCCGAGAACGCCTCAGGCCGCCATCCAGAGACTTCGGAA
GGGGTGGCCATGGCCCTCGTAGACCTTGTCTCCGCCCAGGCCCAAACCAT
GTACCTAGCCAAGGGTCTTAATGTTGGGAACGTACCTGAAGGGACGCTCG
CGAAGCTCGCCGTGACGGTGGTGGAGAGGTTCGAAAAGTGTGTGAGCAAT
TTTAGGGCACGTGCCGGAACTCATTTTGGCAGGCTGGATCCGGAATTTCT
CGGGTATTTGACTTTCATGCCCGCTCTCTTTCGCGCCCTCGCCTACCGTT
TCCTAGCCGTGGCTTACTGGAAGAAGAGCGATCACGGTACGGCGATCGGC
CTCATTCTCCAAGCACAGGCTTTGCTGAAGCCCCGCGCAGATGGAGTATC
TTCAGGTTTACCTTCTATGGACGACTCTCGCTATTTGTCTAAATTTAAGC
CTCAGGTGGAGATATTGAGGAAGGAGGTGAACGGTATGCTCACCTCTTGG
AATCAAGACAATAACATGATTTATTTTGCGGCGGTTGTGGATGCCATGAG
CCTTCCACCTTTGCCGGCAGGAGCGAATATGGTCCAACTAACGAAGTATG
ATTATATGTCGAGCTCGCCGCCCATTTTGTTCTCGGAACCCGCTGAAGCC
AAGACGTCATAA
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Synonyms
Publications