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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr25 | genome | chr25:171671..173582 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00610.1 vs.
Match: EWM21611.1 (BRO1 domain protein [Nannochloropsis gaditana]) HSP 1 Score: 582.4 bits (1500), Expect = 1.100e-162 Identity = 292/408 (71.57%), Postives = 349/408 (85.54%), Query Frame = 0
Query: 2 ASFIPDGAEDALLTLATLVYPFPLPKSKKTGAAFATAFSATGTPAATTTTMESIDKLREEFVDEVCKPKPSMAAVSSAADRYAPQLNRIIQSIDASHDPVRLTKRMQFQWTSVLNARNSPQEYKTQEVFIFEMAMLLSSKALALSNQASLLLSSSDPSCSDNHYADAAILLKLAGGVYIALAHDFLPRWKETPENASGRHPETSEGVAMALVDLVSAQAQTMYLAKGLNVGNVPEGTLAKLAVTVVERFEKCVSNFRARAGTHFGRLDPEFLGYLTFMPALFRALAYRFLAVAYWKKSDHGTAIGLILQAQALLKPRADGVSSGLPSMDDSRYLSKFKPQVEILRKEVNGMLTSWNQDNNMIYFAAVVDAMSLPPLPAGANMVQLTKYDYMSSSPPILFSEPAEAKTS 410
++ +PDG D+LLTL TLVYP PLP+ KK+GAAFA AFS+ GTP ATT+ ME IDK+R+EFVD+V K K S AAVS+AADRYAPQLNRIIQSIDAS DPVRLT+RMQFQWTS LNA+ SP EYKTQEVFIFEMAM+L+SKALA NQA+ +S DPS + YA+AA LLK AGGV++ALAHDFLPRWKETP+NA+GRHPETSEGVAMALVDLVSAQAQ MY+AKG+ VP GTLAKL+VTV++RFEKC+SNF+ARA H R+DP+FL YL FMPAL+RALAYRFLA+A+W+K DHGTAIGL+LQA+ +LK R DGVSSGL +++SR+LS FKPQ+EILR+EV+ MLTSW +DN+ IYFA +VD+ SLPPLP GANMV +TKY+Y+S+ PPILF+E AEAK+S
Sbjct: 3 STILPDGLRDSLLTLCTLVYPLPLPRGKKSGAAFAKAFSSVGTPEATTSIMEGIDKVRQEFVDDVSKLKVSPAAVSTAADRYAPQLNRIIQSIDASQDPVRLTQRMQFQWTSALNAQASPSEYKTQEVFIFEMAMVLASKALAQINQAA---NSIDPSA--DRYAEAATLLKSAGGVFLALAHDFLPRWKETPDNAAGRHPETSEGVAMALVDLVSAQAQAMYVAKGVFAQTVPPGTLAKLSVTVMDRFEKCISNFKARASAHLARVDPDFLSYLIFMPALYRALAYRFLAIAHWEKEDHGTAIGLLLQAEIILKARRDGVSSGLSGIEESRFLSAFKPQLEILRREVSSMLTSWKRDNSTIYFAGIVDSASLPPLPTGANMVSITKYEYVSNLPPILFAEAAEAKSS 405
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00610.1 ID=NO25G00610.1|Name=NO25G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1549bp
GAGGCGTTTGGAGACGCCAGTCAACGTTTGGAACTTCCACGCAAATGTCC
TCGCGGTCCTTGCGTTTATTATGAACGTGGTGTTTCTTTATGCGACCGCA
CCATGTCCATGTTTTGCGTGCGGCCTTGGCGCGGCAATGACACTCCGTCT
CACGACTATCTACTTTCCTTGGTTCACCCGCAATGTGCATAGCCAGACTC
ATACCTTCCGCTCCTTACAGGGCACGCCACTAATAAATGGCCTCTTTCAT
CCCGGACGGGGCCGAAGACGCCCTCCTAACCCTCGCCACCCTCGTATACC
CTTTCCCCTTGCCTAAGAGCAAGAAAACCGGCGCCGCATTCGCCACGGCC
TTCTCGGCCACGGGCACTCCGGCCGCCACCACGACAACCATGGAAAGCAT
CGACAAATTGCGCGAGGAGTTTGTGGACGAGGTTTGCAAGCCCAAACCTA
GCATGGCGGCCGTGAGTAGTGCGGCAGATCGATATGCCCCACAGTTGAAT
AGGATAATTCAGTCGATTGACGCAAGTCACGACCCCGTCCGCCTCACAAA
ACGCATGCAGTTCCAATGGACGTCCGTCCTTAACGCCCGCAACTCCCCCC
AAGAGTACAAAACCCAAGAAGTCTTCATTTTCGAGATGGCCATGCTCCTC
TCCTCCAAGGCTCTCGCCCTGTCCAACCAAGCCTCTCTCCTCCTCTCCTC
CTCGGATCCATCTTGCTCCGACAACCACTACGCGGACGCCGCCATTTTGC
TCAAATTAGCCGGGGGGGTCTACATCGCCCTGGCCCACGATTTTCTCCCC
CGCTGGAAAGAAACGCCCGAGAACGCCTCAGGCCGCCATCCAGAGACTTC
GGAAGGGGTGGCCATGGCCCTCGTAGACCTTGTCTCCGCCCAGGCCCAAA
CCATGTACCTAGCCAAGGGTCTTAATGTTGGGAACGTACCTGAAGGGACG
CTCGCGAAGCTCGCCGTGACGGTGGTGGAGAGGTTCGAAAAGTGTGTGAG
CAATTTTAGGGCACGTGCCGGAACTCATTTTGGCAGGCTGGATCCGGAAT
TTCTCGGGTATTTGACTTTCATGCCCGCTCTCTTTCGCGCCCTCGCCTAC
CGTTTCCTAGCCGTGGCTTACTGGAAGAAGAGCGATCACGGTACGGCGAT
CGGCCTCATTCTCCAAGCACAGGCTTTGCTGAAGCCCCGCGCAGATGGAG
TATCTTCAGGTTTACCTTCTATGGACGACTCTCGCTATTTGTCTAAATTT
AAGCCTCAGGTGGAGATATTGAGGAAGGAGGTGAACGGTATGCTCACCTC
TTGGAATCAAGACAATAACATGATTTATTTTGCGGCGGTTGTGGATGCCA
TGAGCCTTCCACCTTTGCCGGCAGGAGCGAATATGGTCCAACTAACGAAG
TATGATTATATGTCGAGCTCGCCGCCCATTTTGTTCTCGGAACCCGCTGA
AGCCAAGACGTCATAATAGGGATGAAGGGGAGGGAGAGATGATGTAGATT
AGGGTGTATAATTGCTTGATAAGTAAAGTAAGAAATGTATGCGTTCATC back to topprotein sequence of NO25G00610.1 >NO25G00610.1-protein ID=NO25G00610.1-protein|Name=NO25G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MASFIPDGAEDALLTLATLVYPFPLPKSKKTGAAFATAFSATGTPAATTT
TMESIDKLREEFVDEVCKPKPSMAAVSSAADRYAPQLNRIIQSIDASHDP
VRLTKRMQFQWTSVLNARNSPQEYKTQEVFIFEMAMLLSSKALALSNQAS
LLLSSSDPSCSDNHYADAAILLKLAGGVYIALAHDFLPRWKETPENASGR
HPETSEGVAMALVDLVSAQAQTMYLAKGLNVGNVPEGTLAKLAVTVVERF
EKCVSNFRARAGTHFGRLDPEFLGYLTFMPALFRALAYRFLAVAYWKKSD
HGTAIGLILQAQALLKPRADGVSSGLPSMDDSRYLSKFKPQVEILRKEVN
GMLTSWNQDNNMIYFAAVVDAMSLPPLPAGANMVQLTKYDYMSSSPPILF
SEPAEAKTS* back to topmRNA from alignment at chr25:171671..173582- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00610.1 ID=NO25G00610.1|Name=NO25G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at chr25:171671..173582- (Nannochloropsis oceanica)
GAGGCGTTTGGAGACGCCAGTCAACGTTTGGAACTTCCACGCAAATGTCC
TCGCGGTCCTTGCGTTTATTATGAACGTGGTGTTTCTTTATGCGACCGCA
CCATGTCCATGTTTTGCGTGCGGCCTTGGCGCGGCAATGACACTCCGTCT
CACGACTATCTACTTTCCTTGGTTCACCCGCAATGTGCATAGCCAGACTC
ATACCTTCCGCTCCTTACAGGGCACGCCACTAATAAATGGCCTCTTTCAT
CCCGGACGGGGCCGAAGACGCCCTCCTAACCCTCGCCACCCTCGTATACC
CTTTCCCCTTGCCTAAGAGCAAGAAAACCGGCGCCGCATTCGCCACGGCC
TTCTCGGCCACGGGCACTCCGGCCGCCACCACGACAACCATGGAAAGCAT
CGACAAATTGCGCGAGGAGTTTGTGGACGAGGTTTGCAAGCCCAAACCTA
GCATGGCGGCCGTGAGTAGTGCGGCAGATCGATATGCCCCACAGTTGAAT
AGGATAATTCAGTCGATTGACGCAAGTGTGAGTAAATGTTATAACTGGTG
GTGTCTGGGGGCTCGACCGCAGGGAAAGGAGGGAGGAGGGATGTGGGAGG
GATTGGGCGGAGGAACAGAGGAAAACTCATACCTTTTTGCTGAACCTCCT
CTTTTTCACCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCTC
TCCCTCCTTTCCCTTCTTGTACTTCACCAGCACGACCCCGTCCGCCTCAC
AAAACGCATGCAGTTCCAATGGACGTCCGTCCTTAACGCCCGCAACTCCC
CCCAAGAGTACAAAACCCAAGAAGTCTTCATTTTCGAGATGGCCATGCTC
CTCTCCTCCAAGGCTCTCGCCCTGTCCAACCAAGCCTCTCTCCTCCTCTC
CTCCTCGGATCCATCTTGCTCCGACAACCACTACGCGGACGCCGCCATTT
TGCTCAAATTAGCCGGGGGGGTCTACATCGCCCTGGCCCACGATTTTCTC
CCCCGCTGGAAAGAAACGCCCGAGAACGCCTCAGGCCGCCATCCAGAGAC
TTCGGAAGGGGTGGCCATGGCCCTCGTAGACCTTGTCTCCGCCCAGGCCC
AAACCATGTACCTAGCCAAGGGTCTTAATGTTGGGAACGTACCTGAAGGG
ACGCTCGCGAAGCTCGCCGTGACGGTGGTGGAGAGGTTCGAAAAGTGTGT
GAGCAATTTTAGGGCACGTGCCGGAACTCATTTTGGCAGGCTGGATCCGG
AATTTCTCGGGTATTTGACTTTCATGCCGTGAGTAGGAGAGAGTGAGGGA
TGGAGGAGAGGGTTTGTATTTTGTTCATCTGAAACCTGCAGCCGTGTTGT
TCGATTTTCCCTTACCTCCCTCAGAAGTCCACCACTCACCACCTTCTCAA
CTTTTCATGCCTCCCTTCCTGCTTCCCTCCCTACACAGCGCTCTCTTTCG
CGCCCTCGCCTACCGTTTCCTAGCCGTGGCTTACTGGAAGAAGAGCGATC
ACGGTACGGCGATCGGCCTCATTCTCCAAGCACAGGCTTTGCTGAAGCCC
CGCGCAGATGGAGTATCTTCAGGTTTACCTTCTATGGACGACTCTCGCTA
TTTGTCTAAATTTAAGCCTCAGGTGGAGATATTGAGGAAGGAGGTGAACG
GTATGCTCACCTCTTGGAATCAAGACAATAACATGATTTATTTTGCGGCG
GTTGTGGATGCCATGAGCCTTCCACCTTTGCCGGCAGGAGCGAATATGGT
CCAACTAACGAAGTATGATTATATGTCGAGCTCGCCGCCCATTTTGTTCT
CGGAACCCGCTGAAGCCAAGACGTCATAATAGGGATGAAGGGGAGGGAGA
GATGATGTAGATTAGGGTGTATAATTGCTTGATAAGTAAAGTAAGAAATG
TATGCGTTCATC back to topCoding sequence (CDS) from alignment at chr25:171671..173582- >NO25G00610.1 ID=NO25G00610.1|Name=NO25G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at chr25:171671..173582- (Nannochloropsis oceanica)
ATGGCCTCTTTCATCCCGGACGGGGCCGAAGACGCCCTCCTAACCCTCGC
CACCCTCGTATACCCTTTCCCCTTGCCTAAGAGCAAGAAAACCGGCGCCG
CATTCGCCACGGCCTTCTCGGCCACGGGCACTCCGGCCGCCACCACGACA
ACCATGGAAAGCATCGACAAATTGCGCGAGGAGTTTGTGGACGAGGTTTG
CAAGCCCAAACCTAGCATGGCGGCCGTGAGTAGTGCGGCAGATCGATATG
CCCCACAGTTGAATAGGATAATTCAGTCGATTGACGCAAGTCACGACCCC
GTCCGCCTCACAAAACGCATGCAGTTCCAATGGACGTCCGTCCTTAACGC
CCGCAACTCCCCCCAAGAGTACAAAACCCAAGAAGTCTTCATTTTCGAGA
TGGCCATGCTCCTCTCCTCCAAGGCTCTCGCCCTGTCCAACCAAGCCTCT
CTCCTCCTCTCCTCCTCGGATCCATCTTGCTCCGACAACCACTACGCGGA
CGCCGCCATTTTGCTCAAATTAGCCGGGGGGGTCTACATCGCCCTGGCCC
ACGATTTTCTCCCCCGCTGGAAAGAAACGCCCGAGAACGCCTCAGGCCGC
CATCCAGAGACTTCGGAAGGGGTGGCCATGGCCCTCGTAGACCTTGTCTC
CGCCCAGGCCCAAACCATGTACCTAGCCAAGGGTCTTAATGTTGGGAACG
TACCTGAAGGGACGCTCGCGAAGCTCGCCGTGACGGTGGTGGAGAGGTTC
GAAAAGTGTGTGAGCAATTTTAGGGCACGTGCCGGAACTCATTTTGGCAG
GCTGGATCCGGAATTTCTCGGGTATTTGACTTTCATGCCCGCTCTCTTTC
GCGCCCTCGCCTACCGTTTCCTAGCCGTGGCTTACTGGAAGAAGAGCGAT
CACGGTACGGCGATCGGCCTCATTCTCCAAGCACAGGCTTTGCTGAAGCC
CCGCGCAGATGGAGTATCTTCAGGTTTACCTTCTATGGACGACTCTCGCT
ATTTGTCTAAATTTAAGCCTCAGGTGGAGATATTGAGGAAGGAGGTGAAC
GGTATGCTCACCTCTTGGAATCAAGACAATAACATGATTTATTTTGCGGC
GGTTGTGGATGCCATGAGCCTTCCACCTTTGCCGGCAGGAGCGAATATGG
TCCAACTAACGAAGTATGATTATATGTCGAGCTCGCCGCCCATTTTGTTC
TCGGAACCCGCTGAAGCCAAGACGTCATAA back to top
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