NO25G00530.1, NO25G00530.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO25G00530.1
Unique Name	NO25G00530.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1900
Alignment location	chr25:154223..156790 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr25	genome	chr25:154223..156790 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO25G00530.1 vs.
Match: EWM21629.1 (Acyl transferase/acyl hydrolase/lysophospholipase [Nannochloropsis gaditana])

HSP 1 Score: 397.9 bits (1021), Expect = 3.300e-107
Identity = 188/267 (70.41%), Postives = 223/267 (83.52%), Query Frame = 0

Query:   21 RWLSSGPVRGEAKQEGLTRTKQPAFSFSGAGFLSPFHIGVVQALQEKGIITSQTKLAGASGGALVAGSTVCGLTPAEQMAAYKEMAGACRAAGFLGKVRRVLRGSLEARLPEDAHEVANRRLTIAVMRVWPAFQFQPELLEHFHSRQDLLDSLMTSSHVPLYLDAEQPFWTKFRTGLYVDGGLINLVPPVPGSIKVCVFPGHFLLRDDLHVTPHLLGKSYPFSFQQIIKWAFVAPPDDVADELQRMGHQAAVEWAKTGGIEEGREID 288
            +WLS+      AK   +   K+ +FSFSGAGFLSPFHIGVVQALQE+G++T ++KLAGASGGALVA STVCG++P+EQM AYKE+  +CR AGFLG+VR  L  SLEA LP +AH++AN  LT+AVMR+WP FQ QPELL HFHSRQDLLDSL+ SSH+PLYLD+ QPFWT+FR GLYVDGGLI+LVPPVP +IKVCV PGHFL RDDLHVTPHLLG +YPFS QQ ++WAFVAPPDDVADEL RMGHQAA++W ++G I+E R ID
Sbjct:   59 KWLST-----RAKNCRIVNRKEYSFSFSGAGFLSPFHIGVVQALQEEGLLTKKSKLAGASGGALVAASTVCGISPSEQMLAYKEITRSCRTAGFLGRVRGTLLESLEAGLPPNAHDLANESLTVAVMRIWPTFQLQPELLHHFHSRQDLLDSLLASSHLPLYLDSAQPFWTRFRAGLYVDGGLIDLVPPVPDAIKVCVLPGHFLFRDDLHVTPHLLGSTYPFSLQQTMQWAFVAPPDDVADELLRMGHQAAIKWVQSGCIQESRGID 320

The following BLAST results are available for this feature:

BLAST of NO25G00530.1 vs.

BLAST of NO25G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21629.1	3.300e-107	70.41	Acyl transferase/acyl hydrolase/lysophospholipase ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO25G00530	NO25G00530	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO25G00530.1	NO25G00530.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO25G00530.1.cds1	NO25G00530.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00530.1.cds2	NO25G00530.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00530.1.cds3	NO25G00530.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00530.1.cds4	NO25G00530.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00530.1.cds5	NO25G00530.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr25:154223..156790-
coding sequence from alignment at chr25:154223..156790-

mRNA sequence

>NO25G00530.1 ID=NO25G00530.1|Name=NO25G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1900bp
CCCAACAGATTACTTTTGATTTGCTTTTGTCCTCCCTTCTCACATCTCAC
AACCCTGCTCCTCCCCGTCTCCGGTGGCTCCCTCCGCCGACGCGGTCTCG
GGGTATGAGACGCAGCTCCGTACCATGCTTCATCAACACGTTGCCCGCAG
ACTGGGCAGGATTGATTCCCACGCCGTCATCGGTAACAACCGCACTCGTC
TGAGAAGGTACACGGAACTCCTCTGCTACGTATTTCAAGACCGCAGTGAA
CGGCGCATCTTCCGGTACGGACACCATCTTAAAGGGGAGCTTCGGATCCG
AAGTTAGCGTGATCTTAAACGTCACTTTGGGCCCCCCGATCATGGGCTTG
CTACTGGTACTGCTGGCCATGACGGTTTGATTGATAGTGCTGGGAGCGTA
GGAGACCAGTCGATGCGGCTAAAGATGGGACACGCGCTAGCACGTCGACC
TGTCGCACAAGAAGACAAAGGGAAAAGTAAAAGCAAGGACGGAATAAATG
ATACGTCACTGCGGTGATGTTGCTCGTTGATGTGATCAAGATGCACGAGC
ATGCACCCAAGAAGCCTCGCGAGTACGCTCCAGCGATTTTGCATCACATC
TTCCACCATACCCCATCCACAGGCAAGCAGCCACAAGACGCCTTTTTGAT
ACTGCGAGCTGTAATACCGCATATTAATGCTGCCACGCCTATTGGTCCGG
GCGAGGGGCACCCTCCACCTTTGCAGCCCACGGTCACGGTGGTTGTCTTC
GGGGCCGGTCAGGGGCGAAGCCAAGCAGGAAGGTCTGACGCGGACTAAAC
AACCCGCTTTCTCCTTTTCAGGCGCGGGCTTCCTCTCACCATTCCATATA
GGAGTTGTGCAAGCTTTGCAAGAAAAAGGCATCATCACTTCTCAGACCAA
GCTGGCAGGCGCCTCGGGTGGTGCTCTCGTGGCAGGGTCCACAGTGTGTG
GCCTCACTCCAGCAGAGCAGATGGCGGCTTATAAAGAAATGGCTGGCGCG
TGTCGAGCCGCGGGTTTTTTGGGGAAGGTCCGACGAGTGCTGCGCGGGAG
TCTAGAGGCCCGCTTGCCTGAGGATGCGCACGAAGTGGCCAATCGACGGC
TCACTATCGCCGTTATGCGCGTCTGGCCCGCATTCCAATTCCAACCGGAG
CTCCTCGAACACTTTCACTCCCGCCAAGACTTGCTCGACTCTCTTATGAC
CTCGTCACACGTCCCACTCTACCTCGACGCCGAACAGCCATTTTGGACTA
AATTTCGCACGGGGTTGTATGTGGATGGAGGGCTGATCAACCTCGTGCCG
CCGGTGCCGGGTTCGATCAAGGTGTGCGTCTTCCCCGGCCACTTTCTCCT
CCGGGATGACCTGCACGTCACCCCCCACCTCCTCGGCAAGAGCTACCCCT
TCTCATTTCAACAAATCATTAAATGGGCATTCGTGGCACCACCTGACGAC
GTTGCAGACGAATTGCAGCGCATGGGGCACCAAGCAGCGGTAGAGTGGGC
CAAGACGGGCGGGATCGAGGAAGGGAGGGAGATAGATTTGGCCGAAGCGG
TGGAGCCGGATAAGTCGGTGGGTACGTCTTTCGTACGATCCGGGCATGTG
GTGGGTTTGAGTACCAGTAATGGTGGTAGCAACACGAATAACAACGATAT
GTGTGAGGAGAAAGAACAGCACGCCCACGGGGACACGAAAAAGAAAGGAA
ACTGCGAAGCATTGAACAAAGTAACCGACAACAAGAACAACTGACTCTCA
TGCACAAATTAAATGCAGAGATGTATAGAAGAGGCCAATGATGCAAAAAG
GAAAAAAGACGCCAAACAATGTAAAGCTCTACAGAATGAGGGGTAACCTT
GGCTTGTTTGGTGACTTGGTGGCTGACGCCATGCTTCAAGTCGGAAAAAG

protein sequence of NO25G00530.1

>NO25G00530.1-protein ID=NO25G00530.1-protein|Name=NO25G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MLPRLLVRARGTLHLCSPRSRWLSSGPVRGEAKQEGLTRTKQPAFSFSGA
GFLSPFHIGVVQALQEKGIITSQTKLAGASGGALVAGSTVCGLTPAEQMA
AYKEMAGACRAAGFLGKVRRVLRGSLEARLPEDAHEVANRRLTIAVMRVW
PAFQFQPELLEHFHSRQDLLDSLMTSSHVPLYLDAEQPFWTKFRTGLYVD
GGLINLVPPVPGSIKVCVFPGHFLLRDDLHVTPHLLGKSYPFSFQQIIKW
AFVAPPDDVADELQRMGHQAAVEWAKTGGIEEGREIDLAEAVEPDKSVGT
SFVRSGHVVGLSTSNGGSNTNNNDMCEEKEQHAHGDTKKKGNCEALNKVT
DNKNN*

mRNA from alignment at chr25:154223..156790-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO25G00530.1 ID=NO25G00530.1|Name=NO25G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp|location=Sequence derived from alignment at chr25:154223..156790- (Nannochloropsis oceanica)
CCCAACAGATTACTTTTGATTTGCTTTTGTCCTCCCTTCTCACATCTCAC
AACCCTGCTCCTCCCCGTCTCCGGTGGCTCCCTCCGCCGACGCGGTCTCG
GGGTATGAGACGCAGCTCCGTACCATGCTTCATCAACACGTTGCCCGCAG
ACTGGGCAGGATTGATTCCCACGCCGTCATCGGTAACAACCGCACTCGTC
TGAGAAGGTACACGGAACTCCTCTGCTACGTATTTCAAGACCGCAGTGAA
CGGCGCATCTTCCGGTACGGACACCATCTTAAAGGGGAGCTTCGGATCCG
AAGTTAGCGTGATCTTAAACGTCACTTTGGGCCCCCCGATCATGGGCTTG
CTACTGGTACTGCTGGCCATGACGGTTTGATTGATAGTGCTGGGAGCGTA
GGAGACCAGTCGATGCGGCTAAAGATGGGACACGCGCTAGCACGTCGACC
TGTCGCACAAGAAGACAAAGGGAAAAGTAAAAGCAAGGACGGAATAAATG
ATACGTCACTGCGGTGATGTTGCTCGTTGATGTGATCAAGATGCACGAGC
ATGCACCCAAGAAGCCTCGCGAGTACGCTCCAGCGATTTTGCATCACATC
TTCCACCATACCCCATCCACAGGCAAGCAGCCACAAGACGCCTTTTTGAT
ACTGCGAGCTGTAATACCGCATATTAATGCTGCCACGCCTATTGGTCCGG
GCGAGGGGCACCCTCCACCTTTGCAGCCCACGGTCACGGTGGTTGTCTTC
GGGGCCGGTCAGGGGCGAAGCCAAGCAGGAAGGTCTGACGCGGACTAAAC
AACCCGCTTTCTCCTTTTCAGGTGTGTTGGACGGGCAAAATGAGCGCAGG
AGGGAGGAAAATGAGGGTGGGAGGGAGGAGCGCATCGGCCGGTGAATGGA
CGGAAGGAGCAGGTAGTTTTTGGTAATTTATTGGAGGGTAAAAACGGGAG
GTGAGGGACACTTGTCTCGTGTATTGACTCACCGAAATCCTCTCCCCCGC
AACACTCGCAGGCGCGGGCTTCCTCTCACCATTCCATATAGGAGTTGTGC
AAGCTTTGCAAGAAAAAGGCATCATCACTTCTCAGACCAAGGTATGAGAA
TCACACTCAGTAGTCTCCACTTCTATCCCCCCTTTCTAACCTACCCCATC
ATCCACCACACACACGCAGCTGGCAGGCGCCTCGGGTGGTGCTCTCGTGG
CAGGGTCCACAGTGTGTGGCCTCACTCCAGCAGAGCAGATGGCGGCTTAT
AAAGAAATGGCTGGCGCGTGTCGAGCCGCGGGTTTTTTGGGGAAGGTCCG
ACGAGTGCTGCGCGGGAGTCTAGAGGCCCGCTTGCCTGAGGATGCGCACG
AAGTGGCCAATCGACGGTATAAAGGGAGGATAAAGCGTGATGAAATGAAT
TGGTGACGCATCTTAGATTTTGCAGGCTACTAATCTCATTTCTCACACAA
ACCATCTATCTTATTCTTCTATCTACGATCCAGGCTCACTATCGCCGTTA
TGCGCGTCTGGCCCGCATTCCAATTCCAACCGGAGCTCCTCGAACACTTT
CACTCCCGCCAAGACTTGCTCGACTCTCTTATGACCTCGTCACACGTCCC
ACTCTACCTCGACGCCGAACAGCCATTTTGGACTAAATTTCGCACGGGGT
TGTATGTGGATGGAGGGCTGATCAACCTCGTGCCGCCGGTGCCGGGTTCG
ATCAAGGTCCATTAGAGGAGAGGGCAGGGAGGGAGGGAGGGAGAAAGGGA
GGGAGGGAGAAAGGGAGGTGGAGAGACATTTTTCCTTTTACCAGTGTGCT
ACACGGCCACGTATCTTGCAACACATTTGGTGCGGCCTTTTTTGGTATGG
ATGGAGGGTTGCTTGGGTTGGTACCCTGCTGCCGGGGTCGTTCAGGCAGC
TGGAGCAGATAAGATACTTATCTACTGCCGGCGATGACGGTGCATGAACA
CTGACCCTCCTTTTTCTTTCTTAACATTTTCATACACAGGTGTGCGTCTT
CCCCGGCCACTTTCTCCTCCGGGATGACCTGCACGTCACCCCCCACCTCC
TCGGCAAGAGCTACCCCTTCTCATTTCAACAAATCATTAAATGGGCATTC
GTGGCACCACCTGACGACGTTGCAGACGAATTGCAGCGCATGGGGCACCA
AGCAGCGGTAGAGTGGGCCAAGACGGGCGGGATCGAGGAAGGGAGGGAGA
TAGATTTGGCCGAAGCGGTGGAGCCGGATAAGTCGGTGGGTACGTCTTTC
GTACGATCCGGGCATGTGGTGGGTTTGAGTACCAGTAATGGTGGTAGCAA
CACGAATAACAACGATATGTGTGAGGAGAAAGAACAGCACGCCCACGGGG
ACACGAAAAAGAAAGGAAACTGCGAAGCATTGAACAAAGTAACCGACAAC
AAGAACAACTGACTCTCATGCACAAATTAAATGCAGAGATGTATAGAAGA
GGCCAATGATGCAAAAAGGAAAAAAGACGCCAAACAATGTAAAGCTCTAC
AGAATGAGGGGTAACCTTGGCTTGTTTGGTGACTTGGTGGCTGACGCCAT
GCTTCAAGTCGGAAAAAG

Coding sequence (CDS) from alignment at chr25:154223..156790-

>NO25G00530.1 ID=NO25G00530.1|Name=NO25G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr25:154223..156790- (Nannochloropsis oceanica)
ATGCTGCCACGCCTATTGGTCCGGGCGAGGGGCACCCTCCACCTTTGCAG
CCCACGGTCACGGTGGTTGTCTTCGGGGCCGGTCAGGGGCGAAGCCAAGC
AGGAAGGTCTGACGCGGACTAAACAACCCGCTTTCTCCTTTTCAGGCGCG
GGCTTCCTCTCACCATTCCATATAGGAGTTGTGCAAGCTTTGCAAGAAAA
AGGCATCATCACTTCTCAGACCAAGCTGGCAGGCGCCTCGGGTGGTGCTC
TCGTGGCAGGGTCCACAGTGTGTGGCCTCACTCCAGCAGAGCAGATGGCG
GCTTATAAAGAAATGGCTGGCGCGTGTCGAGCCGCGGGTTTTTTGGGGAA
GGTCCGACGAGTGCTGCGCGGGAGTCTAGAGGCCCGCTTGCCTGAGGATG
CGCACGAAGTGGCCAATCGACGGCTCACTATCGCCGTTATGCGCGTCTGG
CCCGCATTCCAATTCCAACCGGAGCTCCTCGAACACTTTCACTCCCGCCA
AGACTTGCTCGACTCTCTTATGACCTCGTCACACGTCCCACTCTACCTCG
ACGCCGAACAGCCATTTTGGACTAAATTTCGCACGGGGTTGTATGTGGAT
GGAGGGCTGATCAACCTCGTGCCGCCGGTGCCGGGTTCGATCAAGGTGTG
CGTCTTCCCCGGCCACTTTCTCCTCCGGGATGACCTGCACGTCACCCCCC
ACCTCCTCGGCAAGAGCTACCCCTTCTCATTTCAACAAATCATTAAATGG
GCATTCGTGGCACCACCTGACGACGTTGCAGACGAATTGCAGCGCATGGG
GCACCAAGCAGCGGTAGAGTGGGCCAAGACGGGCGGGATCGAGGAAGGGA
GGGAGATAGATTTGGCCGAAGCGGTGGAGCCGGATAAGTCGGTGGGTACG
TCTTTCGTACGATCCGGGCATGTGGTGGGTTTGAGTACCAGTAATGGTGG
TAGCAACACGAATAACAACGATATGTGTGAGGAGAAAGAACAGCACGCCC
ACGGGGACACGAAAAAGAAAGGAAACTGCGAAGCATTGAACAAAGTAACC
GACAACAAGAACAACTGA

Synonyms

Publications