NO25G00010.1, NO25G00010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00010.1
Unique NameNO25G00010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1391
Alignment locationchr25:89..2275 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:89..2275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00010NO25G00010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00010.1NO25G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00010.1.cds1NO25G00010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00010.1.cds2NO25G00010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00010.1.cds3NO25G00010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00010.1.cds4NO25G00010.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00010.1.cds5NO25G00010.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00010.1 ID=NO25G00010.1|Name=NO25G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1391bp
NNNNNNNNNNNNGAGGTGGAGGAGGAGGAGCGAGTGACAGAGGCCGGCCC
ACCCGCAAGCGCGCCCGGCCAAATTATGCCTTGGGAATTCGGAGGATCCA
CGAGCAGGCGGAGGAGGCACCGCGCATCCTAACCCCCCAGCAGCGGGCAG
ACTTGCAGCTGGATCAGGTGGTGGCCTTTATGGTAGAGCAGGACATGCCC
ATGGCCAGCTTTCAGGCGATGGTGGACTTCCTCCTTCGGATGCAGGCCCA
GGCCGTGCCTGCCGAAACCAGAGAGATCAAGCGCTACATAATCCACAATC
TCGAAACTGCCGCCGCCGCCGCCATCGCTGCGGCTACCCGCCCTCCCTCC
CTCCCTCCCTCCCTGGCTTCCTCGACTCGCTCCTCCTCATCCCTCTCCGC
ATCTGTTCATGATGCCCGTCGCCCTTTCACCGAGGAGGAGGAGGAAGAGG
AGGAGGAGGATGTTGAGGAGGAGGAGGAGGAAGAAAAAGAGAAGGGCACA
CCGTCAAATGATGCCAGCCGGAGCTCGGGCCGCCGGCCACGACGGCAGAG
ACCAGCCCCCCCCCCTCCCTCCCTTCCTCCTCCTCGTGACGAGCAGGATG
GAGGTGATTATCGTGCCCCTCCTCCCCCGGCACCTGAGGCGTATGTAGGG
GGTGGCATTATGATGGCGGGGCAGCTGGCGCCAGTGCAACTGGAACTGCA
GCTCTGAGGGAGGGTGGGAGGGAGGGAAGGAAGGAGGGGGGTTTCGGGTG
GACATGGTAAGATGTGATGATAGGAAAGGGGAAGGAAGAGGAGGAGGAAG
AGAAGGAAGAAGGGAGGGAGAAGGGGGAGGGTAGTAGTCAGGGTGTTGGC
TACGTAACTCGTCTCATCCGTTACACAAGATGAAGATGATGACAAAGGAA
GTGAGAATGACCAAGAAGAAGGAGAAAAGGAAGAAGAAGATGAAATTAAA
GAAGAACAGAACGATCAAGACGAAGATGGTAACGATGCAGACGAGTAGAA
AAGCAGCCATCGTCCCCGCAGATATTGGGCAATATATCTACATTCCTGCC
CTTCTCCTCCCTTTCAAAATATACAAAGCCCATCAGATCGGATTGACGTC
TCTATTGGGTCATATCGACGCCTTAATCAAATAGGACTATCGTCCTAATC
AAATCATGTTTGACTTCTTTAGCAAATCATTTAAACGTCTCAATCATATC
ATATTGACGTCTTTACGCCCTTGCACCACCCTCCTCGCGTCCTTGTGCAC
CTTGTCCCTCCCCATAGTCTTCCTTCTCTTCCTCCTTCCCTGCCTCCTCT
CCTTCTGCTCATTCCTTCCCAAGCTCAAACACGCCCACAGCCCGGTCCTG
AATCCTCCTTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
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protein sequence of NO25G00010.1

>NO25G00010.1-protein ID=NO25G00010.1-protein|Name=NO25G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
XXXXGGGGGASDRGRPTRKRARPNYALGIRRIHEQAEEAPRILTPQQRAD
LQLDQVVAFMVEQDMPMASFQAMVDFLLRMQAQAVPAETREIKRYIIHNL
ETAAAAAIAAATRPPSLPPSLASSTRSSSSLSASVHDARRPFTEEEEEEE
EEDVEEEEEEEKEKGTPSNDASRSSGRRPRRQRPAPPPPSLPPPRDEQDG
GDYRAPPPPAPEAYVGGGIMMAGQLAPVQLELQL*
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mRNA from alignment at chr25:89..2275+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00010.1 ID=NO25G00010.1|Name=NO25G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2187bp|location=Sequence derived from alignment at chr25:89..2275+ (Nannochloropsis oceanica)
NNNNNNNNNNNNGAGGTGGAGGAGGAGGAGCGAGTGACAGAGGCCGGTAC
GCACAAATATGGTGGCGTGTATCTCCCTCCCTCCCTCCCTCCCTTCTTCC
GCCCCTCCTTCCCTCTCTTCTTCCCTCCCTCCTTCCTTGCTTCCTTAACA
GTGGGTCCTCCACTGATGACCTCTCCCTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCTCTCCAGGCCCACCCTTGTGCGCTGTCG
TTCAAGGACCCCTTGAAGGACTCACACCCTCCCTCCCTCCCTCCCTCCCT
CCAGGCCCACCCGCAAGCGCGCCCGGCCAAATTATGCCTTGGGAATTCGG
AGGATCCACGAGCAGGCGGAGGAGGTGAGGGAAAGAGGGTTGGAGGGAGG
GAAGGGGGAAAGAGAAGAAAGTCCAGGCATGTATGTGTCGTCTCTGATCC
CGAAACGTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAG
GCACCGCGCATCCTAACCCCCCAGCAGCGGGCAGACTTGCAGCTGGATCA
GGTGGTGGCCTTTATGGTAGAGCAGGACATGCCCATGGCCAGGTGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGCAAGGGATGCTTCGTATTTGT
TTTTATTAGTTTATTGGGCTCTACCCACCTCGCAGAGAGCCCTCCCTTCC
TCCTTTCCTCGCCCTCCATTCCTCCCTCCTCATCCCTCTCTCATCCTCCC
TTTCCCTCCGTCCCTCCCTCCCTCCCTCTCTACCTGCAGCTTTCAGGCGA
TGGTGGACTTCCTCCTTCGGATGCAGGCCCAGGCCGTGCCTGCCGAAACC
AGAGAGATCAAGGTGAGGGAGGGAGGGAGGGAGGGGAACGGAGGAGAGGG
GTGTGAGAGACAAGAGAGAGAAAGAGAGAGAAAGAGAGAAAGAGAGAAAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAACTGGAGAGAAAATGGGGGCAAG
ATACATCAGCCTGTTTCCTTACGTCTTCTTTCGCCCTCCCTCCATCCCTC
CCTCCCTCCATTCCTCCCTCCCTCCAGCGCTACATAATCCACAATCTCGA
AACTGCCGCCGCCGCCGCCATCGCTGCGGCTACCCGCCCTCCCTCCCTCC
CTCCCTCCCTGGCTTCCTCGACTCGCTCCTCCTCATCCCTCTCCGCATCT
GTTCATGATGCCCGTCGCCCTTTCACCGAGGAGGAGGAGGAAGAGGAGGA
GGAGGATGTTGAGGAGGAGGAGGAGGAAGAAAAAGAGAAGGGCACACCGT
CAAATGATGCCAGCCGGAGCTCGGGCCGCCGGCCACGACGGCAGAGACCA
GCCCCCCCCCCTCCCTCCCTTCCTCCTCCTCGTGACGAGCAGGATGGAGG
TGATTATCGTGCCCCTCCTCCCCCGGCACCTGAGGCGTATGTAGGGGGTG
GCATTATGATGGCGGGGCAGCTGGCGCCAGTGCAACTGGAACTGCAGCTC
TGAGGGAGGGTGGGAGGGAGGGAAGGAAGGAGGGGGGTTTCGGGTGGACA
TGGTAAGATGTGATGATAGGAAAGGGGAAGGAAGAGGAGGAGGAAGAGAA
GGAAGAAGGGAGGGAGAAGGGGGAGGGTAGTAGTCAGGGTGTTGGCTACG
TAACTCGTCTCATCCGTTACACAAGATGAAGATGATGACAAAGGAAGTGA
GAATGACCAAGAAGAAGGAGAAAAGGAAGAAGAAGATGAAATTAAAGAAG
AACAGAACGATCAAGACGAAGATGGTAACGATGCAGACGAGTAGAAAAGC
AGCCATCGTCCCCGCAGATATTGGGCAATATATCTACATTCCTGCCCTTC
TCCTCCCTTTCAAAATATACAAAGCCCATCAGATCGGATTGACGTCTCTA
TTGGGTCATATCGACGCCTTAATCAAATAGGACTATCGTCCTAATCAAAT
CATGTTTGACTTCTTTAGCAAATCATTTAAACGTCTCAATCATATCATAT
TGACGTCTTTACGCCCTTGCACCACCCTCCTCGCGTCCTTGTGCACCTTG
TCCCTCCCCATAGTCTTCCTTCTCTTCCTCCTTCCCTGCCTCCTCTCCTT
CTGCTCATTCCTTCCCAAGCTCAAACACGCCCACAGCCCGGTCCTGAATC
CTCCTTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
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Coding sequence (CDS) from alignment at chr25:89..2275+

>NO25G00010.1 ID=NO25G00010.1|Name=NO25G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at chr25:89..2275+ (Nannochloropsis oceanica)
NNNNNNNNNNGAGGTGGAGGAGGAGGAGCGAGTGACAGAGGCCGGCCCAC
CCGCAAGCGCGCCCGGCCAAATTATGCCTTGGGAATTCGGAGGATCCACG
AGCAGGCGGAGGAGGCACCGCGCATCCTAACCCCCCAGCAGCGGGCAGAC
TTGCAGCTGGATCAGGTGGTGGCCTTTATGGTAGAGCAGGACATGCCCAT
GGCCAGCTTTCAGGCGATGGTGGACTTCCTCCTTCGGATGCAGGCCCAGG
CCGTGCCTGCCGAAACCAGAGAGATCAAGCGCTACATAATCCACAATCTC
GAAACTGCCGCCGCCGCCGCCATCGCTGCGGCTACCCGCCCTCCCTCCCT
CCCTCCCTCCCTGGCTTCCTCGACTCGCTCCTCCTCATCCCTCTCCGCAT
CTGTTCATGATGCCCGTCGCCCTTTCACCGAGGAGGAGGAGGAAGAGGAG
GAGGAGGATGTTGAGGAGGAGGAGGAGGAAGAAAAAGAGAAGGGCACACC
GTCAAATGATGCCAGCCGGAGCTCGGGCCGCCGGCCACGACGGCAGAGAC
CAGCCCCCCCCCCTCCCTCCCTTCCTCCTCCTCGTGACGAGCAGGATGGA
GGTGATTATCGTGCCCCTCCTCCCCCGGCACCTGAGGCGTATGTAGGGGG
TGGCATTATGATGGCGGGGCAGCTGGCGCCAGTGCAACTGGAACTGCAGC
TCTGA
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Synonyms
Publications