NO24G02290.1, NO24G02290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02290.1
Unique NameNO24G02290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1517
Alignment locationchr24:610379..612716 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:610379..612716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02290.1 vs.
Match: AAW79363.1 (chloroplast light harvesting complex protein [Heterocapsa triquetra])

HSP 1 Score: 160.2 bits (404), Expect = 8.500e-36
Identity = 86/186 (46.24%), Postives = 116/186 (62.37%), Query Frame = 0 
Query:   79 LENQVGFDIETGGKPWDPFGFAGVSERN----GLGILPHIKWLQESEIKHGRTAMLAFLGVIVPGSLGIYVPTYPQEPDFTKAFSAALQSN--PLGMAQIALAVAIIEGHYYAGDFWTGGGDRQVGAFGFDPLGFSKGKSEAAIKSMQLKEIKNGRLAMIAMAAFASEKFIPGSVPLLHSAFPTLP 259
            L   VG D+ET G+ WDP GF  + +RN     +   PH ++L+ESEIKHGR  MLAF+G++V     + +P YPQEPD+  A SA   S    LG+ Q+++   ++EG Y+  + W G  DR+ G  GFDPL  +K K    +K  QL+E+KNGRLAMIA+AAFA+   IPGSVPLL   +   P
Sbjct:  108 LGGMVGADVETNGEIWDPLGFGKLYDRNFDFNNVMTYPHAQYLRESEIKHGRVCMLAFVGIVVQSI--VQIPGYPQEPDWLNALSACYASKVPTLGLVQMSVFFMLVEGRYFPENAWIGQMDREPGDLGFDPLKLTK-KPGFDLKKAQLQELKNGRLAMIAVAAFAANHVIPGSVPLLTGFYAVRP 290
The following BLAST results are available for this feature:
BLAST of NO24G02290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400SequenceAAW79363.1
Match NameE-valueIdentityDescription
AAW79363.18.500e-3646.24chloroplast light harvesting complex protein [Hete... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02290NO24G02290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02290.1NO24G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02290.1.cds1NO24G02290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02290.1.cds2NO24G02290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02290.1.cds3NO24G02290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02290.1.cds4NO24G02290.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02290.1.cds5NO24G02290.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02290.1.cds6NO24G02290.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02290.1 ID=NO24G02290.1|Name=NO24G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp
CTGGGTTTGAGCAGGATTCACCTCAAGGAGCTGAAAGCAACTGCCTTCTC
CCACTCCCTTTCGGTTTGCATATCCCTGATGGACGGACTGGGTCATTTTC
TGTCTACACATAGGGCCCTGCACAAAAAGGGCGAGACCTGGCTAGCTCGT
TCGACCCTCGATCCAGTTCGGGCTGCGTGTCTCAACAAGCAGAAGCAATC
TTCTTTCTTGGCACGCTTGCCTCCCTCCACATGCCATGTCCCCAAGGCAA
CGCACCGCTGCACCGAATCACAACACACAAAACTTGCGCAACGAGCATGA
TGTCAATCTTTCTTACATTTAGATGCACCATGATGCCAGACCTACCGCCA
GGCGAACTGCAGTGGGCACACAAACATCCTCGGCCTCCTCTTGTCGCCAT
CCCTCTGCTCACAGTCCGCACCCCACGACCACATCACAACACAGATCTTC
CTTTCGAAATATGAAGTGCATCGTGTTTGCGGGTCTGCTGGCGTCCGCCA
CGGCGTTCATCGCCCCTGCTCCCCGTGCGTCGTCCCGTTCGGTGATGAAG
ATGGGCCTCGAGAACCAGGTTGGGTTCGACATTGAGACGGGAGGCAAGCC
TTGGGACCCGTTTGGCTTTGCGGGCGTCTCCGAACGCAACGGCCTCGGCA
TCTTACCCCACATCAAGTGGTTGCAAGAGTCGGAGATCAAGCACGGTCGA
ACTGCCATGCTTGCTTTCCTCGGTGTGATTGTTCCGGGCTCCCTGGGCAT
CTATGTGCCGACCTACCCCCAGGAGCCTGACTTCACCAAGGCTTTCTCTG
CGGCCCTGCAATCCAACCCCCTGGGCATGGCGCAAATCGCCCTGGCAGTT
GCGATCATTGAAGGCCACTACTACGCCGGCGACTTCTGGACTGGTGGAGG
AGACCGTCAGGTGGGCGCCTTCGGGTTTGACCCTCTAGGCTTCTCTAAGG
GCAAGAGCGAGGCAGCGATCAAGTCTATGCAGCTCAAGGAGATCAAGAAT
GGCCGCCTTGCGATGATTGCCATGGCTGCCTTCGCCTCGGAGAAGTTCAT
CCCGGGATCTGTGCCCCTCCTCCACAGCGCATTCCCCACTCTGCCTATCT
AATTCAAGCTGTTTAGCTCCGGGAGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGAGGGTGATGTAGCTATGTTGCTGGCGGGGAGAGTAG
GTGGGAGGGAAGGAGGGAAGGAGGGAGGGATGCCGACAGAGAATGGAGTC
ATAAAGAAAAAGAAAAAGAATCAGAAAATCCGGAATGAGAACCAGTCAGC
AGCAGCAGCAGCACGAACGGCAGCAGCACTAACGGCCGCAGAAGTTGAAG
TACATCTCTCTTCTCATCTCGTGTGACCTTTAATTTCTTCCTCACCTCAC
CTTATCGTTATGCACTTCCTCGGATCCATCTTTCTTGATTTTCGACCTCG
CATCCATTTACCTTCGTCCCGTCCACTCAGCGCCAGCAGCAACAGCAGCA
CCAGCAGCAATAGCAGC
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protein sequence of NO24G02290.1

>NO24G02290.1-protein ID=NO24G02290.1-protein|Name=NO24G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MHHDARPTARRTAVGTQTSSASSCRHPSAHSPHPTTTSQHRSSFRNMKCI
VFAGLLASATAFIAPAPRASSRSVMKMGLENQVGFDIETGGKPWDPFGFA
GVSERNGLGILPHIKWLQESEIKHGRTAMLAFLGVIVPGSLGIYVPTYPQ
EPDFTKAFSAALQSNPLGMAQIALAVAIIEGHYYAGDFWTGGGDRQVGAF
GFDPLGFSKGKSEAAIKSMQLKEIKNGRLAMIAMAAFASEKFIPGSVPLL
HSAFPTLPI*
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mRNA from alignment at chr24:610379..612716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02290.1 ID=NO24G02290.1|Name=NO24G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2338bp|location=Sequence derived from alignment at chr24:610379..612716- (Nannochloropsis oceanica)
CTGGGTTTGAGCAGGATTCACCTCAAGGAGCTGAAAGCAACTGCCTTCTC
CCACTCCCTTTCGGTTTGCATATCCCTGATGGACGGACTGGGTCATTTTC
TGTCTACACATAGGGCCCTGCACAAAAAGGGCGAGACCTGGCTAGCTCGT
TCGACCCTCGATCCAGTTCGGGCTGCGTGTCTCAACAAGCAGAAGCAATC
TTCTTTCTTGGCACGCTTGCCTCCCTCCACATGCCATGTCCCCAAGGCAA
CGCACCGCTGCACCGAATCACAACACACAAAACTTGCGCAACGAGCATGA
TGTCAATCTTTCTTACATTTAGATGCACCATGATGCCAGACCTACCGCCA
GGCGAACTGCAGTGGGCACACAAACATCCTCGGCCTCCTCTTGTCGCCAT
CCCTCTGCTCACAGTCCGCACCCCACGACCACATCACAACACAGATCTTC
CTTTCGAAATATGAAGTGCATCGTGTTTGCGGGTCTGCTGGCGTCCGCCA
CGGCGTTCATCGCCCCTGCTCCCCGTGCGTCGGTAAGTATGCCTTCAACT
AGATCGGTGTGAGGGTAGATGGGAGGGAAGCAGACCAACCAGGCGGAGAG
CTTCGATTAAATCGATACCATATTCGTTCACACGTTCACAGTCCCGTTCG
GTGATGAAGATGGGCCTCGAGAACCAGGTTGGGTTCGACATTGAGACGGG
AGGCAAGCCTTGGGACCCGTTTGGCTTTGCGGGCGTCTCCGAACGCAACG
GCCTCGGCATCTTACCCCACATCAAGTGGTTGCAAGAGTCGGAGGTGGGG
AAGGAGGATGGGAAGGAGGGAGGAAGGGAGGGGTGGGGAGGATAGGATGG
GTAGCATCTTAAGCTTAATTTGGTGGATGAAAAGCAGAAATAGAGGAAGG
AAAGACGGTACACACTCACCCGCGTCTACCCTGCCCTTTTCCCCTTTCCT
TCTTTTTTCCAACCACAGATCAAGCACGGTCGAACTGCCATGCTTGCTTT
CCTCGGTGTGATTGTTCCGGGCTCCCTGGGCATCTATGTGCCGACCTACC
CCCAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGAAGGCAG
GAATCGGAGGAGTACGAAGGGGAAAGTGACATGTGGCTGTGACCACTCAC
ACACTTCCTCCCTTTCCCGTCATTGATAGGAGCCTGACTTCACCAAGGCT
TTCTCTGCGGCCCTGCAATCCAACCCCCTGGGCATGGCGCAAATCGCCCT
GGCAGTTGCGATCATTGAAGGCCACTACTACGCCGGTACATCCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTC
CTTCCTCCTTTCCGTCTTCTCATCCCCACTCACGCACATCGTCTTCCTAT
CCCTCCTCCCGGCCTTCCTCTCCTGCAGGCGACTTCTGGACTGGTGGAGG
AGACCGTCAGGTGGGCGCCTTCGGGTTTGACCCTCTAGGCTTCTCTAAGG
TACACACATGTCATATCATGCCACTTCCCCCCTCCTTCCCCCCTCCCCTC
CCTCTCTCCTTTCTTTTCTCCAATTCACCTCCAAGATGCTTAAGTGTCAC
GTTTCTTCCTTCCTTTCTTCCCCCCTTCCCTCCCTCTCTCCTTCCCTTCC
TCCCTCCTACCCCCTTTTCCTTTTCTCATCCGCCACTGACCCTTTCGTCT
CTTCCTCCCTCTCCTTCTTTTCGTTGGTGTCCCTCCCTCCTTCCCTCCCT
GCCTCCCTCTCTTTCCACAGGGCAAGAGCGAGGCAGCGATCAAGTCTATG
CAGCTCAAGGAGATCAAGAATGGCCGCCTTGCGATGATTGCCATGGCTGC
CTTCGCCTCGGAGAAGTTCATCCCGGGATCTGTGCCCCTCCTCCACAGCG
CATTCCCCACTCTGCCTATCTAATTCAAGCTGTTTAGCTCCGGGAGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGGTGATGTAGCTA
TGTTGCTGGCGGGGAGAGTAGGTGGGAGGGAAGGAGGGAAGGAGGGAGGG
ATGCCGACAGAGAATGGAGTCATAAAGAAAAAGAAAAAGAATCAGAAAAT
CCGGAATGAGAACCAGTCAGCAGCAGCAGCAGCACGAACGGCAGCAGCAC
TAACGGCCGCAGAAGTTGAAGTACATCTCTCTTCTCATCTCGTGTGACCT
TTAATTTCTTCCTCACCTCACCTTATCGTTATGCACTTCCTCGGATCCAT
CTTTCTTGATTTTCGACCTCGCATCCATTTACCTTCGTCCCGTCCACTCA
GCGCCAGCAGCAACAGCAGCACCAGCAGCAATAGCAGC
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Coding sequence (CDS) from alignment at chr24:610379..612716-

>NO24G02290.1 ID=NO24G02290.1|Name=NO24G02290.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr24:610379..612716- (Nannochloropsis oceanica)
ATGCACCATGATGCCAGACCTACCGCCAGGCGAACTGCAGTGGGCACACA
AACATCCTCGGCCTCCTCTTGTCGCCATCCCTCTGCTCACAGTCCGCACC
CCACGACCACATCACAACACAGATCTTCCTTTCGAAATATGAAGTGCATC
GTGTTTGCGGGTCTGCTGGCGTCCGCCACGGCGTTCATCGCCCCTGCTCC
CCGTGCGTCGTCCCGTTCGGTGATGAAGATGGGCCTCGAGAACCAGGTTG
GGTTCGACATTGAGACGGGAGGCAAGCCTTGGGACCCGTTTGGCTTTGCG
GGCGTCTCCGAACGCAACGGCCTCGGCATCTTACCCCACATCAAGTGGTT
GCAAGAGTCGGAGATCAAGCACGGTCGAACTGCCATGCTTGCTTTCCTCG
GTGTGATTGTTCCGGGCTCCCTGGGCATCTATGTGCCGACCTACCCCCAG
GAGCCTGACTTCACCAAGGCTTTCTCTGCGGCCCTGCAATCCAACCCCCT
GGGCATGGCGCAAATCGCCCTGGCAGTTGCGATCATTGAAGGCCACTACT
ACGCCGGCGACTTCTGGACTGGTGGAGGAGACCGTCAGGTGGGCGCCTTC
GGGTTTGACCCTCTAGGCTTCTCTAAGGGCAAGAGCGAGGCAGCGATCAA
GTCTATGCAGCTCAAGGAGATCAAGAATGGCCGCCTTGCGATGATTGCCA
TGGCTGCCTTCGCCTCGGAGAAGTTCATCCCGGGATCTGTGCCCCTCCTC
CACAGCGCATTCCCCACTCTGCCTATCTAA
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Synonyms
Publications