NO24G02290.1, NO24G02290.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G02290.1
Unique Name	NO24G02290.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1517
Alignment location	chr24:610379..612716 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:610379..612716 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO24G02290.1 vs.
Match: AAW79363.1 (chloroplast light harvesting complex protein [Heterocapsa triquetra])

HSP 1 Score: 160.2 bits (404), Expect = 8.500e-36
Identity = 86/186 (46.24%), Postives = 116/186 (62.37%), Query Frame = 0

Query:   79 LENQVGFDIETGGKPWDPFGFAGVSERN----GLGILPHIKWLQESEIKHGRTAMLAFLGVIVPGSLGIYVPTYPQEPDFTKAFSAALQSN--PLGMAQIALAVAIIEGHYYAGDFWTGGGDRQVGAFGFDPLGFSKGKSEAAIKSMQLKEIKNGRLAMIAMAAFASEKFIPGSVPLLHSAFPTLP 259
            L   VG D+ET G+ WDP GF  + +RN     +   PH ++L+ESEIKHGR  MLAF+G++V     + +P YPQEPD+  A SA   S    LG+ Q+++   ++EG Y+  + W G  DR+ G  GFDPL  +K K    +K  QL+E+KNGRLAMIA+AAFA+   IPGSVPLL   +   P
Sbjct:  108 LGGMVGADVETNGEIWDPLGFGKLYDRNFDFNNVMTYPHAQYLRESEIKHGRVCMLAFVGIVVQSI--VQIPGYPQEPDWLNALSACYASKVPTLGLVQMSVFFMLVEGRYFPENAWIGQMDREPGDLGFDPLKLTK-KPGFDLKKAQLQELKNGRLAMIAVAAFAANHVIPGSVPLLTGFYAVRP 290

The following BLAST results are available for this feature:

BLAST of NO24G02290.1 vs.

BLAST of NO24G02290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
AAW79363.1	8.500e-36	46.24	chloroplast light harvesting complex protein [Hete...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G02290	NO24G02290	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G02290.1	NO24G02290.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G02290.1.cds1	NO24G02290.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02290.1.cds2	NO24G02290.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02290.1.cds3	NO24G02290.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02290.1.cds4	NO24G02290.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02290.1.cds5	NO24G02290.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02290.1.cds6	NO24G02290.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:610379..612716-
coding sequence from alignment at chr24:610379..612716-

mRNA sequence

>NO24G02290.1 ID=NO24G02290.1|Name=NO24G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp
CTGGGTTTGAGCAGGATTCACCTCAAGGAGCTGAAAGCAACTGCCTTCTC
CCACTCCCTTTCGGTTTGCATATCCCTGATGGACGGACTGGGTCATTTTC
TGTCTACACATAGGGCCCTGCACAAAAAGGGCGAGACCTGGCTAGCTCGT
TCGACCCTCGATCCAGTTCGGGCTGCGTGTCTCAACAAGCAGAAGCAATC
TTCTTTCTTGGCACGCTTGCCTCCCTCCACATGCCATGTCCCCAAGGCAA
CGCACCGCTGCACCGAATCACAACACACAAAACTTGCGCAACGAGCATGA
TGTCAATCTTTCTTACATTTAGATGCACCATGATGCCAGACCTACCGCCA
GGCGAACTGCAGTGGGCACACAAACATCCTCGGCCTCCTCTTGTCGCCAT
CCCTCTGCTCACAGTCCGCACCCCACGACCACATCACAACACAGATCTTC
CTTTCGAAATATGAAGTGCATCGTGTTTGCGGGTCTGCTGGCGTCCGCCA
CGGCGTTCATCGCCCCTGCTCCCCGTGCGTCGTCCCGTTCGGTGATGAAG
ATGGGCCTCGAGAACCAGGTTGGGTTCGACATTGAGACGGGAGGCAAGCC
TTGGGACCCGTTTGGCTTTGCGGGCGTCTCCGAACGCAACGGCCTCGGCA
TCTTACCCCACATCAAGTGGTTGCAAGAGTCGGAGATCAAGCACGGTCGA
ACTGCCATGCTTGCTTTCCTCGGTGTGATTGTTCCGGGCTCCCTGGGCAT
CTATGTGCCGACCTACCCCCAGGAGCCTGACTTCACCAAGGCTTTCTCTG
CGGCCCTGCAATCCAACCCCCTGGGCATGGCGCAAATCGCCCTGGCAGTT
GCGATCATTGAAGGCCACTACTACGCCGGCGACTTCTGGACTGGTGGAGG
AGACCGTCAGGTGGGCGCCTTCGGGTTTGACCCTCTAGGCTTCTCTAAGG
GCAAGAGCGAGGCAGCGATCAAGTCTATGCAGCTCAAGGAGATCAAGAAT
GGCCGCCTTGCGATGATTGCCATGGCTGCCTTCGCCTCGGAGAAGTTCAT
CCCGGGATCTGTGCCCCTCCTCCACAGCGCATTCCCCACTCTGCCTATCT
AATTCAAGCTGTTTAGCTCCGGGAGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGAGGGTGATGTAGCTATGTTGCTGGCGGGGAGAGTAG
GTGGGAGGGAAGGAGGGAAGGAGGGAGGGATGCCGACAGAGAATGGAGTC
ATAAAGAAAAAGAAAAAGAATCAGAAAATCCGGAATGAGAACCAGTCAGC
AGCAGCAGCAGCACGAACGGCAGCAGCACTAACGGCCGCAGAAGTTGAAG
TACATCTCTCTTCTCATCTCGTGTGACCTTTAATTTCTTCCTCACCTCAC
CTTATCGTTATGCACTTCCTCGGATCCATCTTTCTTGATTTTCGACCTCG
CATCCATTTACCTTCGTCCCGTCCACTCAGCGCCAGCAGCAACAGCAGCA
CCAGCAGCAATAGCAGC

protein sequence of NO24G02290.1

>NO24G02290.1-protein ID=NO24G02290.1-protein|Name=NO24G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MHHDARPTARRTAVGTQTSSASSCRHPSAHSPHPTTTSQHRSSFRNMKCI
VFAGLLASATAFIAPAPRASSRSVMKMGLENQVGFDIETGGKPWDPFGFA
GVSERNGLGILPHIKWLQESEIKHGRTAMLAFLGVIVPGSLGIYVPTYPQ
EPDFTKAFSAALQSNPLGMAQIALAVAIIEGHYYAGDFWTGGGDRQVGAF
GFDPLGFSKGKSEAAIKSMQLKEIKNGRLAMIAMAAFASEKFIPGSVPLL
HSAFPTLPI*

mRNA from alignment at chr24:610379..612716-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G02290.1 ID=NO24G02290.1|Name=NO24G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2338bp|location=Sequence derived from alignment at chr24:610379..612716- (Nannochloropsis oceanica)
CTGGGTTTGAGCAGGATTCACCTCAAGGAGCTGAAAGCAACTGCCTTCTC
CCACTCCCTTTCGGTTTGCATATCCCTGATGGACGGACTGGGTCATTTTC
TGTCTACACATAGGGCCCTGCACAAAAAGGGCGAGACCTGGCTAGCTCGT
TCGACCCTCGATCCAGTTCGGGCTGCGTGTCTCAACAAGCAGAAGCAATC
TTCTTTCTTGGCACGCTTGCCTCCCTCCACATGCCATGTCCCCAAGGCAA
CGCACCGCTGCACCGAATCACAACACACAAAACTTGCGCAACGAGCATGA
TGTCAATCTTTCTTACATTTAGATGCACCATGATGCCAGACCTACCGCCA
GGCGAACTGCAGTGGGCACACAAACATCCTCGGCCTCCTCTTGTCGCCAT
CCCTCTGCTCACAGTCCGCACCCCACGACCACATCACAACACAGATCTTC
CTTTCGAAATATGAAGTGCATCGTGTTTGCGGGTCTGCTGGCGTCCGCCA
CGGCGTTCATCGCCCCTGCTCCCCGTGCGTCGGTAAGTATGCCTTCAACT
AGATCGGTGTGAGGGTAGATGGGAGGGAAGCAGACCAACCAGGCGGAGAG
CTTCGATTAAATCGATACCATATTCGTTCACACGTTCACAGTCCCGTTCG
GTGATGAAGATGGGCCTCGAGAACCAGGTTGGGTTCGACATTGAGACGGG
AGGCAAGCCTTGGGACCCGTTTGGCTTTGCGGGCGTCTCCGAACGCAACG
GCCTCGGCATCTTACCCCACATCAAGTGGTTGCAAGAGTCGGAGGTGGGG
AAGGAGGATGGGAAGGAGGGAGGAAGGGAGGGGTGGGGAGGATAGGATGG
GTAGCATCTTAAGCTTAATTTGGTGGATGAAAAGCAGAAATAGAGGAAGG
AAAGACGGTACACACTCACCCGCGTCTACCCTGCCCTTTTCCCCTTTCCT
TCTTTTTTCCAACCACAGATCAAGCACGGTCGAACTGCCATGCTTGCTTT
CCTCGGTGTGATTGTTCCGGGCTCCCTGGGCATCTATGTGCCGACCTACC
CCCAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGAAGGCAG
GAATCGGAGGAGTACGAAGGGGAAAGTGACATGTGGCTGTGACCACTCAC
ACACTTCCTCCCTTTCCCGTCATTGATAGGAGCCTGACTTCACCAAGGCT
TTCTCTGCGGCCCTGCAATCCAACCCCCTGGGCATGGCGCAAATCGCCCT
GGCAGTTGCGATCATTGAAGGCCACTACTACGCCGGTACATCCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTC
CTTCCTCCTTTCCGTCTTCTCATCCCCACTCACGCACATCGTCTTCCTAT
CCCTCCTCCCGGCCTTCCTCTCCTGCAGGCGACTTCTGGACTGGTGGAGG
AGACCGTCAGGTGGGCGCCTTCGGGTTTGACCCTCTAGGCTTCTCTAAGG
TACACACATGTCATATCATGCCACTTCCCCCCTCCTTCCCCCCTCCCCTC
CCTCTCTCCTTTCTTTTCTCCAATTCACCTCCAAGATGCTTAAGTGTCAC
GTTTCTTCCTTCCTTTCTTCCCCCCTTCCCTCCCTCTCTCCTTCCCTTCC
TCCCTCCTACCCCCTTTTCCTTTTCTCATCCGCCACTGACCCTTTCGTCT
CTTCCTCCCTCTCCTTCTTTTCGTTGGTGTCCCTCCCTCCTTCCCTCCCT
GCCTCCCTCTCTTTCCACAGGGCAAGAGCGAGGCAGCGATCAAGTCTATG
CAGCTCAAGGAGATCAAGAATGGCCGCCTTGCGATGATTGCCATGGCTGC
CTTCGCCTCGGAGAAGTTCATCCCGGGATCTGTGCCCCTCCTCCACAGCG
CATTCCCCACTCTGCCTATCTAATTCAAGCTGTTTAGCTCCGGGAGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGGTGATGTAGCTA
TGTTGCTGGCGGGGAGAGTAGGTGGGAGGGAAGGAGGGAAGGAGGGAGGG
ATGCCGACAGAGAATGGAGTCATAAAGAAAAAGAAAAAGAATCAGAAAAT
CCGGAATGAGAACCAGTCAGCAGCAGCAGCAGCACGAACGGCAGCAGCAC
TAACGGCCGCAGAAGTTGAAGTACATCTCTCTTCTCATCTCGTGTGACCT
TTAATTTCTTCCTCACCTCACCTTATCGTTATGCACTTCCTCGGATCCAT
CTTTCTTGATTTTCGACCTCGCATCCATTTACCTTCGTCCCGTCCACTCA
GCGCCAGCAGCAACAGCAGCACCAGCAGCAATAGCAGC

Coding sequence (CDS) from alignment at chr24:610379..612716-

>NO24G02290.1 ID=NO24G02290.1|Name=NO24G02290.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr24:610379..612716- (Nannochloropsis oceanica)
ATGCACCATGATGCCAGACCTACCGCCAGGCGAACTGCAGTGGGCACACA
AACATCCTCGGCCTCCTCTTGTCGCCATCCCTCTGCTCACAGTCCGCACC
CCACGACCACATCACAACACAGATCTTCCTTTCGAAATATGAAGTGCATC
GTGTTTGCGGGTCTGCTGGCGTCCGCCACGGCGTTCATCGCCCCTGCTCC
CCGTGCGTCGTCCCGTTCGGTGATGAAGATGGGCCTCGAGAACCAGGTTG
GGTTCGACATTGAGACGGGAGGCAAGCCTTGGGACCCGTTTGGCTTTGCG
GGCGTCTCCGAACGCAACGGCCTCGGCATCTTACCCCACATCAAGTGGTT
GCAAGAGTCGGAGATCAAGCACGGTCGAACTGCCATGCTTGCTTTCCTCG
GTGTGATTGTTCCGGGCTCCCTGGGCATCTATGTGCCGACCTACCCCCAG
GAGCCTGACTTCACCAAGGCTTTCTCTGCGGCCCTGCAATCCAACCCCCT
GGGCATGGCGCAAATCGCCCTGGCAGTTGCGATCATTGAAGGCCACTACT
ACGCCGGCGACTTCTGGACTGGTGGAGGAGACCGTCAGGTGGGCGCCTTC
GGGTTTGACCCTCTAGGCTTCTCTAAGGGCAAGAGCGAGGCAGCGATCAA
GTCTATGCAGCTCAAGGAGATCAAGAATGGCCGCCTTGCGATGATTGCCA
TGGCTGCCTTCGCCTCGGAGAAGTTCATCCCGGGATCTGTGCCCCTCCTC
CACAGCGCATTCCCCACTCTGCCTATCTAA

Synonyms

Publications