NO24G02210.1, NO24G02210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02210.1
Unique NameNO24G02210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2461
Alignment locationchr24:589163..592292 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:589163..592292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02210.1 vs.
Match: EWM24431.1 (hypothetical protein Naga_101382g1 [Nannochloropsis gaditana])

HSP 1 Score: 277.3 bits (708), Expect = 9.200e-71
Identity = 218/434 (50.23%), Postives = 262/434 (60.37%), Query Frame = 0 
Query:   35 DGCGCNDDNLLRRRRRPREQPRPEVAQGSSSSSSSSSCSSSTDVPTRPRRRRAPIMYTSSG----LLLLVPLLFNST------RTQAFVVWPRLPAGR--FVVP---SLSSSGESLRSSS--SALFAAAPRKRSKIRIGDEEMSFFFDDEGEVGRGEEEAGWEGQTVLEDEEEDEDE---EQESRRQRSRRKRFATANAAEAQQAKNDDPYYAFRDRRMFKMGEDERAYYDR------LNAYKPPSSSSSSLSTS-IPPSLPSSSPSSTSSSSSI----VVGSGTELFPSRTAGLSPAALEAISAFLVEGGEEPLSLFSSPMTVGGR---------EGGKD--RFEKRVADLADEAAEGGKRGQAEGREEGEQLFSSEWYAAEMKRRNDEGKYSLALTYWERIHKEGMRPCPAAYTQVLRACRYTGEIMLALAL 427
            DGCG      L   R P   P      G S  S     +S +    R R R+  IMY        ++L  PLL  S       R  +FV+   +P  R  F +P     S+    + SSS  + L+AAAPRKRSKI+IG+ EMSFFFD+E E   GEEE GW      E  EED  E   E     +  R +R A + AAE  QAK DDPYY +RDRRMFKMGEDERAYYD       L AY   S  +S  S   +PP LP   PSSTS SSS+    +VGSGTEL+P R+AG+SPA LEAIS+FLVEGGEEPL L +    +GG          +GGK+  + ++RV  L+DEAAEG  RG  E REEGE+LFSSEWYA EM+RRND+GKYSLALTYWER+ +EG+RPCPAAYTQ LRACR+TGE+ LAL L
Sbjct:    6 DGCGHPP---LEGNRSP-PVPTGLGRSGDSRYSKKRLAASPSRSRLRRRWRQDRIMYFKRSPFHPVVLTAPLLLLSLLSSFCGRAYSFVLRESVPCNRPLFRLPHRGERSTLSPLIPSSSPPTLLYAAAPRKRSKIKIGEAEMSFFFDEEEEDEIGEEE-GWSQAAWQEGTEEDGAEGGREGGREGEGGRGRRLARSTAAEIMQAKIDDPYYQYRDRRMFKMGEDERAYYDSFVLTLSLFAYSSGSMRTSPRSPPPLPPPLPPP-PSSTSPSSSVPSNLIVGSGTELYPGRSAGMSPAVLEAISSFLVEGGEEPL-LLTEREEMGGSGGGGRFGVGQGGKEEAKEKERVRWLSDEAAEGNARGAVEEREEGERLFSSEWYAGEMRRRNDQGKYSLALTYWERLLREGIRPCPAAYTQALRACRFTGEMELALEL 432
The following BLAST results are available for this feature:
BLAST of NO24G02210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24431.19.200e-7150.23hypothetical protein Naga_101382g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02210NO24G02210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02210.1NO24G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02210.1.cds1NO24G02210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02210.1.cds2NO24G02210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02210.1.cds3NO24G02210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02210.1.cds4NO24G02210.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02210.1 ID=NO24G02210.1|Name=NO24G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp
TATAAGAAGGCTTGTTGCTTCTGTGGGGGAAAGGTGAGGACAGAGGGCAG
GATTGAGCACGTGAAGGCATGTGTTGCGGTTCCACCCCGCCCGCAGAGTG
CCCGTAGTAATCCTCTTTCCACCAGTGCCTCTGTAAGCATGTTTTAATCC
AATCGCATTAGACACGCCTTCCATCGATCATCCATCGTCACCCCGACTAG
TGTCGTTGGTGCTTTAATCCATCATCCTCCCCTACAAGGCGCCATTGCCC
GACGGGCCATCGTTTGCATGAACGAGTATCGTAATTGTCTCCCCCCGCCT
CGTCACAGCGCCTGGCTAGCCCTCCTAGTCTGGACCAAACCCCCCGCTGA
TAATCTTAAGTCTGGTTAACCCTCGACTCTCCCACAACAACGACAATTAT
CTGTCGCAAGGCCTTGCCTTTGTTCCTGCTTGCTCTCAAATCTTGCCTCT
CATCGCCTGCCTCTCCCTCACGACGAAGCAAAGCTAACGACTATGTCCAT
ACCACCATCTCACCGCCCCTACGACCCCACCACACATTTCCGATCCATAG
CGCCCAACGGCACTGCGACGACTAGCATGAAGGTCAGCAGCTGTGATGGC
TGCGGCTGCAACGACGACAATTTGTTGCGGCGACGGAGGAGACCGCGGGA
GCAGCCCAGACCAGAGGTTGCGCAGGGTAGCAGTAGCAGCAGCAGCAGCA
GCAGCTGCAGCAGCAGCACAGACGTACCCACAAGACCAAGGAGAAGGAGA
GCGCCTATTATGTACACAAGCAGCGGCCTCCTTCTTCTTGTTCCCCTCCT
TTTCAACAGCACCCGCACCCAAGCATTTGTTGTCTGGCCTCGCCTTCCTG
CCGGTCGTTTTGTCGTTCCCTCTTTGTCCTCCTCGGGAGAGTCTCTAAGG
TCATCATCGTCTGCCCTTTTTGCGGCTGCGCCACGAAAGCGGAGTAAAAT
TAGAATAGGCGACGAGGAGATGTCTTTTTTCTTCGACGACGAAGGAGAGG
TGGGGAGAGGAGAAGAGGAAGCAGGGTGGGAAGGACAGACGGTCCTGGAG
GACGAGGAGGAGGACGAGGACGAGGAGCAAGAAAGCCGTCGTCAGAGAAG
TCGGCGGAAGAGGTTTGCGACTGCCAACGCTGCGGAAGCCCAGCAGGCGA
AGAACGACGACCCGTACTACGCATTCAGGGACAGGAGGATGTTTAAGATG
GGGGAGGACGAGCGGGCGTACTACGACAGACTAAACGCCTACAAGCCCCC
TTCGTCATCCTCCTCTTCCCTCTCCACCTCCATCCCACCGTCCCTCCCTT
CCTCCTCCCCGTCCTCCACCTCTTCCTCCTCCTCCATCGTCGTGGGCTCG
GGCACCGAGCTATTTCCCAGCCGCACCGCCGGCCTCTCTCCCGCTGCCCT
TGAAGCCATTTCCGCCTTCCTTGTGGAAGGTGGGGAAGAGCCCCTCTCTC
TCTTCTCCTCTCCCATGACCGTGGGAGGAAGGGAAGGAGGGAAGGACCGA
TTCGAGAAGCGGGTGGCGGACCTGGCGGATGAGGCGGCCGAGGGCGGGAA
GAGGGGCCAAGCGGAGGGACGGGAGGAAGGGGAGCAGCTGTTCAGCAGTG
AGTGGTACGCCGCCGAGATGAAACGGAGAAACGACGAGGGGAAGTACTCC
CTGGCACTCACGTACTGGGAACGCATCCACAAAGAAGGAATGAGACCGTG
CCCTGCGGCTTACACCCAGGTCTTACGGGCGTGCCGTTACACGGGAGAGA
TAATGCTGGCGTTGGCGCTGCTCCAGGAGATGGAGGACGACGGGGGGCGG
ATTTGTACGCGGGTGGGCTCGATTGGGTTGTCCGCCTTCTCTCCCACTCC
CGGCGATATCTGCAGACCCTCGACCTTTTCGAGACGCTCAGCAACAAGGG
CGTGCGCCTCCGTCCCTCCTCCTTTAATGTCCTCATGGAGGAGTTGGCGG
CCATACCCAAGTGGAGGGAGGTTGTCAAGGTCCGTACTTTGATGAAGGCT
TACCGCGTCGCGCCTGACGTGGACAGCTACTGCTGGATCATTACCGCCAA
TCTCGCCCTCGGCCGCACTTACGATGCGACGCGCTTGCTTGCAGAGATGG
GAGACAGAGGGCTGGCCCCTTCGGAAAGCATGTTCGCCGCGTGGAGCTCC
ATGGCAGCAGTGACGGCGTCGGAGCGTAGGAGGGCAACAGCGGCAGCAGC
GTTAAATGTAGGCTCTCCCTCGGCAGTCGCGGCCGGTCTGGTGGGGCAGG
AGGAGGAAGAGCGGGAGGGAGAGGGGAGAGGGAGGGGGAGGTTGGGGGTA
CAGGACCTGCGATTTTGCTGGCTTGAGTTGACCTGTCGAGATGATGGGTG
AGAGAGGGTAAGGGAAGGAGGGAAGAAGAGAAGAAGGGAAGAAGGGAGGG
AGAAAGGAGGATGATTTTGATCCATAGTGTAGAAAAGAAAAGAGGAGAAG
AACGGGGGGGG
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protein sequence of NO24G02210.1

>NO24G02210.1-protein ID=NO24G02210.1-protein|Name=NO24G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MSIPPSHRPYDPTTHFRSIAPNGTATTSMKVSSCDGCGCNDDNLLRRRRR
PREQPRPEVAQGSSSSSSSSSCSSSTDVPTRPRRRRAPIMYTSSGLLLLV
PLLFNSTRTQAFVVWPRLPAGRFVVPSLSSSGESLRSSSSALFAAAPRKR
SKIRIGDEEMSFFFDDEGEVGRGEEEAGWEGQTVLEDEEEDEDEEQESRR
QRSRRKRFATANAAEAQQAKNDDPYYAFRDRRMFKMGEDERAYYDRLNAY
KPPSSSSSSLSTSIPPSLPSSSPSSTSSSSSIVVGSGTELFPSRTAGLSP
AALEAISAFLVEGGEEPLSLFSSPMTVGGREGGKDRFEKRVADLADEAAE
GGKRGQAEGREEGEQLFSSEWYAAEMKRRNDEGKYSLALTYWERIHKEGM
RPCPAAYTQVLRACRYTGEIMLALALLQEMEDDGGRICTRVGSIGLSAFS
PTPGDICRPSTFSRRSATRACASVPPPLMSSWRSWRPYPSGGRLSRSVL*
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mRNA from alignment at chr24:589163..592292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02210.1 ID=NO24G02210.1|Name=NO24G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=3130bp|location=Sequence derived from alignment at chr24:589163..592292+ (Nannochloropsis oceanica)
TATAAGAAGGCTTGTTGCTTCTGTGGGGGAAAGGTGAGGACAGAGGGCAG
GATTGAGCACGTGAAGGCATGTGTTGCGGTTCCACCCCGCCCGCAGAGTG
CCCGTAGTAATCCTCTTTCCACCAGTGCCTCTGTAAGCATGTTTTAATCC
AATCGCATTAGACACGCCTTCCATCGATCATCCATCGTCACCCCGACTAG
TGTCGTTGGTGCTTTAATCCATCATCCTCCCCTACAAGGCGCCATTGCCC
GACGGGCCATCGTTTGCATGAACGAGTATCGTAATTGTCTCCCCCCGCCT
CGTCACAGCGCCTGGCTAGCCCTCCTAGTCTGGACCAAACCCCCCGCTGA
TAATCTTAAGTCTGGTTAACCCTCGACTCTCCCACAACAACGACAATTAT
CTGTCGCAAGGCCTTGCCTTTGTTCCTGCTTGCTCTCAAATCTTGCCTCT
CATCGCCTGCCTCTCCCTCACGACGAAGCAAAGCTAACGACTATGTCCAT
ACCACCATCTCACCGCCCCTACGACCCCACCACACATTTCCGATCCATAG
CGCCCAACGGCACTGCGACGACTAGCATGAAGGTCAGCAGCTGTGATGGC
TGCGGCTGCAACGACGACAATTTGTTGCGGCGACGGAGGAGACCGCGGGA
GCAGCCCAGACCAGAGGTTGCGCAGGGTAGCAGTAGCAGCAGCAGCAGCA
GCAGCTGCAGCAGCAGCACAGACGTACCCACAAGACCAAGGAGAAGGAGA
GCGCCTATTATGTACACAAGCAGCGGCCTCCTTCTTCTTGTTCCCCTCCT
TTTCAACAGCACCCGCACCCAAGCATTTGTTGTCTGGCCTCGCCTTCCTG
CCGGTCGTTTTGTCGTTCCCTCTTTGTCCTCCTCGGGAGAGTCTCTAAGG
TCATCATCGTCTGCCCTTTTTGCGGCTGCGCCACGAAAGCGGAGTAAAAT
TAGAATAGGCGACGAGGAGATGTCTTTTTTCTTCGACGACGAAGGAGAGG
TGGGGAGAGGAGAAGAGGAAGCAGGGTGGGAAGGACAGACGGTCCTGGAG
GACGAGGAGGAGGACGAGGACGAGGAGCAAGAAAGCCGTCGTCAGAGAAG
TCGGCGGAAGAGGTTTGCGACTGCCAACGCTGCGGAAGCCCAGCAGGCGA
AGAACGACGACCCGTACTACGCATTCAGGGACAGGAGGATGTTTAAGATG
GGGGAGGACGAGCGGGCGTACTACGACAGGTGAGAAGGATGGAGGGAAGT
ATGAAGGGAGGGAAAGAAGGGAGAGGGGTTATGCGCGCCTTAATTTCTCT
TTCAAAAGATCGCCCCACCGTTAATCCCCTTCCTCCTTCCCTCCTTTCCC
CCTCCCTTAGACTAAACGCCTACAAGCCCCCTTCGTCATCCTCCTCTTCC
CTCTCCACCTCCATCCCACCGTCCCTCCCTTCCTCCTCCCCGTCCTCCAC
CTCTTCCTCCTCCTCCATCGTCGTGGGCTCGGGCACCGAGCTATTTCCCA
GCCGCACCGCCGGCCTCTCTCCCGCTGCCCTTGAAGCCATTTCCGCCTTC
CTTGTGGAAGGTGGGGAAGAGCCCCTCTCTCTCTTCTCCTCTCCCATGAC
CGTGGGAGGAAGGGAAGGAGGGAAGGACCGATTCGAGAAGCGGGTGGCGG
ACCTGGCGGATGAGGCGGCCGAGGGCGGGAAGAGGGGCCAAGCGGAGGGA
CGGGAGGAAGGGGAGCAGCTGTTCAGCAGTGAGTGGTACGCCGCCGAGAT
GAAACGGAGAAACGACGAGGGGAAGTACTCCCTGGCACTCACGTACTGGG
AACGCATCCACAAAGAAGGAATGAGACCGTGCCCTGCGGCTTACACCCAG
GTCTTACGGGCGTGCCGTTACACGGGAGAGATAATGCTGGCGTTGGCGCT
GCTCCAGGAGATGGAGGACGACGGGGGGCGGATTTGTACGCGGGTAGGGA
GGGAGGGAGGGAAATAGGAAGAAAGGGAGGGAGGGTGGGAGGGAGGGAGG
GAACTAGAAAGAGAGGGAGGAAGAGAAAGAAAACACACGCATGCACGTCT
GTATGAATTTGGTAAGACTTAATATTCTCCCTCCTTTCCCTCTCTCCCCC
TTTCCCTCCCTCCCTCCCTGCTCCAGGTGGGCTCGATTGGGTTGTCCGCC
TTCTCTCCCACTCCCGGCGATATCTGCAGACCCTCGACCTTTTCGAGACG
CTCAGCAACAAGGGCGTGCGCCTCCGTCCCTCCTCCTTTAATGTCCTCAT
GGAGGAGTTGGCGGCCATACCCAAGTGGAGGGAGGTTGTCAAGGTACGTG
AACAAGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTTTCAAGG
TCTGAGCCTTGAGAAAAGCTTGTCGTATCGCGCAGACACAGGTATACATA
TATATATGTATATACATCGTCGCGTCTTCCGCTTGCTTGTCCCTTCCTCT
TTCCCTCCCTCCCCACCACCCACCCACCCCTCCCTCCCTCCCTGCCTGCT
TCCCTCCCTCAGGTCCGTACTTTGATGAAGGCTTACCGCGTCGCGCCTGA
CGTGGACAGCTACTGCTGGATCATTACCGCCAATCTCGCCCTCGGCCGCA
CTTACGATGCGACGCGCTTGCTTGCAGAGATGGGAGACAGAGGGGTGAGT
CCTCCCTCCCTCCGTCCTTCCTTCCTTCCCTTCCGCCCTCCTTGCCTTCC
TTGCGTTGTTTTGGGGCACTTTTCACTTTCCAATTTATATTTTCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCTTCAGCTGGCCCCTTCGGAAAGCAT
GTTCGCCGCGTGGAGCTCCATGGCAGCAGTGACGGCGTCGGAGCGTAGGA
GGGCAACAGCGGCAGCAGCGTTAAATGTAGGCTCTCCCTCGGCAGTCGCG
GCCGGTCTGGTGGGGCAGGAGGAGGAAGAGCGGGAGGGAGAGGGGAGAGG
GAGGGGGAGGTTGGGGGTACAGGACCTGCGATTTTGCTGGCTTGAGTTGA
CCTGTCGAGATGATGGGTGAGAGAGGGTAAGGGAAGGAGGGAAGAAGAGA
AGAAGGGAAGAAGGGAGGGAGAAAGGAGGATGATTTTGATCCATAGTGTA
GAAAAGAAAAGAGGAGAAGAACGGGGGGGG
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Coding sequence (CDS) from alignment at chr24:589163..592292+

>NO24G02210.1 ID=NO24G02210.1|Name=NO24G02210.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr24:589163..592292+ (Nannochloropsis oceanica)
ATGTCCATACCACCATCTCACCGCCCCTACGACCCCACCACACATTTCCG
ATCCATAGCGCCCAACGGCACTGCGACGACTAGCATGAAGGTCAGCAGCT
GTGATGGCTGCGGCTGCAACGACGACAATTTGTTGCGGCGACGGAGGAGA
CCGCGGGAGCAGCCCAGACCAGAGGTTGCGCAGGGTAGCAGTAGCAGCAG
CAGCAGCAGCAGCTGCAGCAGCAGCACAGACGTACCCACAAGACCAAGGA
GAAGGAGAGCGCCTATTATGTACACAAGCAGCGGCCTCCTTCTTCTTGTT
CCCCTCCTTTTCAACAGCACCCGCACCCAAGCATTTGTTGTCTGGCCTCG
CCTTCCTGCCGGTCGTTTTGTCGTTCCCTCTTTGTCCTCCTCGGGAGAGT
CTCTAAGGTCATCATCGTCTGCCCTTTTTGCGGCTGCGCCACGAAAGCGG
AGTAAAATTAGAATAGGCGACGAGGAGATGTCTTTTTTCTTCGACGACGA
AGGAGAGGTGGGGAGAGGAGAAGAGGAAGCAGGGTGGGAAGGACAGACGG
TCCTGGAGGACGAGGAGGAGGACGAGGACGAGGAGCAAGAAAGCCGTCGT
CAGAGAAGTCGGCGGAAGAGGTTTGCGACTGCCAACGCTGCGGAAGCCCA
GCAGGCGAAGAACGACGACCCGTACTACGCATTCAGGGACAGGAGGATGT
TTAAGATGGGGGAGGACGAGCGGGCGTACTACGACAGACTAAACGCCTAC
AAGCCCCCTTCGTCATCCTCCTCTTCCCTCTCCACCTCCATCCCACCGTC
CCTCCCTTCCTCCTCCCCGTCCTCCACCTCTTCCTCCTCCTCCATCGTCG
TGGGCTCGGGCACCGAGCTATTTCCCAGCCGCACCGCCGGCCTCTCTCCC
GCTGCCCTTGAAGCCATTTCCGCCTTCCTTGTGGAAGGTGGGGAAGAGCC
CCTCTCTCTCTTCTCCTCTCCCATGACCGTGGGAGGAAGGGAAGGAGGGA
AGGACCGATTCGAGAAGCGGGTGGCGGACCTGGCGGATGAGGCGGCCGAG
GGCGGGAAGAGGGGCCAAGCGGAGGGACGGGAGGAAGGGGAGCAGCTGTT
CAGCAGTGAGTGGTACGCCGCCGAGATGAAACGGAGAAACGACGAGGGGA
AGTACTCCCTGGCACTCACGTACTGGGAACGCATCCACAAAGAAGGAATG
AGACCGTGCCCTGCGGCTTACACCCAGGTCTTACGGGCGTGCCGTTACAC
GGGAGAGATAATGCTGGCGTTGGCGCTGCTCCAGGAGATGGAGGACGACG
GGGGGCGGATTTGTACGCGGGTGGGCTCGATTGGGTTGTCCGCCTTCTCT
CCCACTCCCGGCGATATCTGCAGACCCTCGACCTTTTCGAGACGCTCAGC
AACAAGGGCGTGCGCCTCCGTCCCTCCTCCTTTAATGTCCTCATGGAGGA
GTTGGCGGCCATACCCAAGTGGAGGGAGGTTGTCAAGGTCCGTACTTTGA
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Synonyms
Publications