NO24G02010.1, NO24G02010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02010.1
Unique NameNO24G02010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1764
Alignment locationchr24:529492..533596 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:529492..533596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO24G02010.1 vs.
Match: EWM24413.1 (hypothetical protein Naga_101484g2 [Nannochloropsis gaditana])

HSP 1 Score: 195.7 bits (496), Expect = 4.100e-46
Identity = 118/172 (68.60%), Postives = 136/172 (79.07%), Query Frame = 0
Query:    1 MDKAGG-DSKLVLGLAIGSAYTRSATATAACFPKEGGREGEKDSGFILNRPEIVVNADGDRGTATLVALRKEEQDGGGKQKEGEWLVGAAAKTAMGGRYASQVQSWGGMTILQALLGEKKEDE-EDEEEEEEEVVDEEEE-GREEKVGMEEVCSQLLQHVIEQAENSSGECP 170
            MDK+GG ++KLV+GLAIGSA+TR+ATA  +C    G   G+K S  +L RPEIVVNADGDR   TLVALRKEE+ G    KEGEWLVG+AAKTAMGGRY +QVQSW G+ ILQ+ +GEK+E+E EDEEEEEEE  +EEEE  RE KVGMEEVC QLLQHVIEQAEN SG  P
Sbjct:    1 MDKSGGGEAKLVMGLAIGSAFTRAATALISCPTASGAGMGDKGSNLVLMRPEIVVNADGDRAIPTLVALRKEEEGG----KEGEWLVGSAAKTAMGGRYNAQVQSWQGVKILQSFMGEKEEEEVEDEEEEEEEEEEEEEERERERKVGMEEVCGQLLQHVIEQAENFSGVRP 168          
The following BLAST results are available for this feature:
BLAST of NO24G02010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24413.14.100e-4668.60hypothetical protein Naga_101484g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02010NO24G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02010.1NO24G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02010.1.cds1NO24G02010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds2NO24G02010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds3NO24G02010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds4NO24G02010.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds5NO24G02010.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds6NO24G02010.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds7NO24G02010.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds8NO24G02010.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds9NO24G02010.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds10NO24G02010.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds11NO24G02010.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds12NO24G02010.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds13NO24G02010.1.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02010.1.cds14NO24G02010.1.cds14Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02010.1 ID=NO24G02010.1|Name=NO24G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp
ATGGATAAAGCCGGAGGAGACAGCAAGCTGGTCTTGGGACTGGCCATTGG
CAGTGCGTACACCCGATCTGCTACCGCGACAGCCGCGTGCTTTCCCAAGG
AAGGCGGGCGGGAAGGGGAAAAGGATAGCGGATTTATCTTGAACCGTCCA
GAGATCGTGGTGAATGCGGACGGGGACCGCGGGACGGCCACGCTGGTGGC
GCTGCGGAAGGAGGAGCAGGATGGTGGGGGGAAGCAGAAGGAGGGAGAGT
GGTTGGTGGGGGCAGCGGCCAAGACGGCCATGGGCGGGCGCTACGCATCA
CAAGTGCAATCTTGGGGAGGTATGACAATCCTACAAGCTTTGCTTGGGGA
GAAGAAGGAGGACGAGGAGGATGAGGAAGAGGAGGAGGAAGAGGTGGTGG
ACGAGGAGGAGGAAGGGAGGGAGGAGAAGGTGGGCATGGAGGAGGTGTGC
AGCCAGTTACTGCAGCATGTAATTGAGCAGGCGGAGAACTCCAGTGGAGA
GTGCCCTTCAGAATGTGTCTTGGCTATACCCTCTTGGTGCACGGAAGAGC
ACCGTGGCGCCGCCATCCACGCCCTGAACATGGCCGGGCTGTCTGTCTTG
GGCGTCATCCGCGAGCCCCTGGCCACCCTCCTCGCCTTCCGGCAGAACGA
GGGGGAGAGAGGATGCGCAGGGCTTTTACCAATTACTCCATTCCTCCTCC
TCCCCCCTTCCTCCCTCCCTCCTTCCACCCCTGCCCGGGGCGAGGCCTTT
GTGGACCGACTCGTCTCCTTGTGCTGCGCGGATTTTCGGAAAAAGGCGGG
CTGTGATGCCACAGAGAGCAAGAGAGCGATTGCCAAGCTGAAGAAAGAGT
GTGAAAACGCCCTAAAAACTCTATCTACTTCGACCACGGTGGACATTGAA
ATCGACTCCCTCTACGAGGGCTTCGACCTTCGCACCCGCATTACCCGTGC
GCGTTTCGAGAGTGAAATTTTTGACATTCTCAAGGCCTGCATCTCCGCTG
TAGAAGCCGCCCTTGCTGCAGCGGGCGTGGCAAAAGAAGACGTAGGTTTG
CTTCTGCTCGCTGGCGGCGCTTCCCGCGTTCCCAAACTCCAGCAATGGCT
TCAAGCCTCCTTCCTCTCTCCCGCGGGCAGCACGCGCATCAAATCTGTGG
ACACGAACCCAGAGGAGGGGGTGGCCCTGGGAGCCGCACTCCAGGCCCAG
CTTCTCTCCCAAGCCGCCGCCACCGCCTCCTCCTCCTCCTCTTCCGCAGG
AGGCAGCGGCGACGCTCACCCCTTCACTCACAGCCTCACTACCTCCCCTC
TCTCCTTCGGCCTACTGGTCACCGACCTCCCCACAGAGGAGGGAGGGAAG
GAGGGAGGGATGACGACGGCGTTTTTCAAGTCCTTCTTGAAGCACGCGTC
GATTGCCTCCTCGGCGAAATCAAAAATAGGGGACAGGCAACCGTTCTTCC
TGATCCATCAAGGGGAGTTCCTCCCCGCCTCCCAGCGTGTTCGTGTCAAA
AAAAGCGCCAACGACCAGGCCGACATTTCTCTGCACGTCGTGGCTGCCGG
GTCGGAGGGACCGGTTGAGGAAGGGGGGGAGGAAAGTGTCTTGACGCTGG
CGGAGATTACGTACAGAGCTCCAGAGGGAGATCAAACAGAGGAGTGGGAT
CTCACCATGACCCTGGCCGCCGACGGCGTGCTGCGTGTCCGACTACAAGA
GAAGGACGGTGGGCAGGTCCTAAGGGACGTAGTAATTCGCGCCAAAAAAG
AAACTCAAAATTAA
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protein sequence of NO24G02010.1

>NO24G02010.1-protein ID=NO24G02010.1-protein|Name=NO24G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MDKAGGDSKLVLGLAIGSAYTRSATATAACFPKEGGREGEKDSGFILNRP
EIVVNADGDRGTATLVALRKEEQDGGGKQKEGEWLVGAAAKTAMGGRYAS
QVQSWGGMTILQALLGEKKEDEEDEEEEEEEVVDEEEEGREEKVGMEEVC
SQLLQHVIEQAENSSGECPSECVLAIPSWCTEEHRGAAIHALNMAGLSVL
GVIREPLATLLAFRQNEGERGCAGLLPITPFLLLPPSSLPPSTPARGEAF
VDRLVSLCCADFRKKAGCDATESKRAIAKLKKECENALKTLSTSTTVDIE
IDSLYEGFDLRTRITRARFESEIFDILKACISAVEAALAAAGVAKEDVGL
LLLAGGASRVPKLQQWLQASFLSPAGSTRIKSVDTNPEEGVALGAALQAQ
LLSQAAATASSSSSSAGGSGDAHPFTHSLTTSPLSFGLLVTDLPTEEGGK
EGGMTTAFFKSFLKHASIASSAKSKIGDRQPFFLIHQGEFLPASQRVRVK
KSANDQADISLHVVAAGSEGPVEEGGEESVLTLAEITYRAPEGDQTEEWD
LTMTLAADGVLRVRLQEKDGGQVLRDVVIRAKKETQN*
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mRNA from alignment at chr24:529492..533596+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02010.1 ID=NO24G02010.1|Name=NO24G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=4105bp|location=Sequence derived from alignment at chr24:529492..533596+ (Nannochloropsis oceanica)
ATGGATAAAGCCGGAGGAGACAGCAAGCTGGTCTTGGGACTGGCCATTGG CAGTGCGTACACCCGATCTGCTACCGCGACAGCCGCGTGCTTTCCCAAGG AAGGCGGGCGGGAAGGGGAAAAGGATAGCGGATTTATCTTGAACCGTCCA GAGATCGTGGTGAATGCGGACGGGGACCGCGGGACGGCCACGCTGGTGGC GCTGCGGAAGGAGGAGCAGGATGGTGGGGGGAAGCAGAAGGAGGGAGAGT GGTTGGTGGGGGTAAGTGTTTGGGTATTGGGTTCAAAAAAAGGAGGGAAA GAAAGACGGGCGGATTGATGTAAGTAGCGTGCCTGCGGCATGAAAAATAA CGCGCGCGTGACAATAGATTCAGTCAACCTCCCACCCTTTCTTTCCACTA ACATCCTTCTTTCCCTCCCTCCCTCCCTTCCTCCCTCATCACAGGCAGCG GCCAAGACGGCCATGGGCGGGCGCTACGCATCACAAGTGCAATCTTGGGG AGGTATGACAATCCTACAAGCTTTGCTTGGGGAGAAGAAGGAGGACGAGG AGGATGAGGAAGAGGAGGAGGAAGAGGTGGTGGACGAGGAGGAGGAAGGG AGGGAGGAGAAGGTGGGCATGGAGGAGGTGTGCAGCCAGTTACTGCAGCA TGTAATTGAGCAGGCGGAGAACTCCAGTGGAGTACGTAAAAAGAACGGGA AGGGAGGGGGGGAGGGAGGGAGGGAGAGAAAGAAGGAAGTAATCCTGACA GTCCTTGCTGTCCGCTCACTTCCCTCGCTTCCTCCCCCTCCGTCCCTCCC TTCCTCCTCCTTTCTTCAGGAGTGCCCTTCAGAATGTGTCTTGGCTATAC CCTCTTGGTGCACGGAAGAGCACCGTGGCGCCGCCATCCACGCCCTGAAC ATGGCCGGGCTGTCTGTCTTGTGAGGAGGGAGGGAGGGAGGGAGGGAGAG AGGGAGGAAAGGAAGGACAAGATACCTCCAGGGAGGCGGAGAAGGAAGGA AAGTTAGATGGAAAATCATTGCTGTGTCCGCTTCTGACTCTTCCTTCTCT TCATTTCGTGTTTCTCCTCCCCTTCCTCCCCCTCTCCCTCTTCCCCTCCT TACCTCCCAGGGGCGTCATCCGCGAGCCCCTGGCCACCCTCCTCGCCTTC CGGCAGAACGAGGGGGAGGTCGGGGGGGAAGGAGGGAAAGAGGAAGGGCG GTACATTGTCATTTATGACCTAGGACACTCTCATTGTGACGTCTCGGTTG TCAGAGAGGATGCGCAGGTACAAGCCAGCCCTCCCTCCCTCCCTCCCTCC TCCCTCTCTCATTCCCTCCCTCCTGCGAATCAACTTTCATCAAAATCACG CCAAGATAGCGTTTCCCTTTTCGTTGCTGACCTTCCTGTCCTCCTTTCCT CCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCCGT CCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCCTTCACCCACCACCC ATCCATACAGGGCTTTTACCAATTACTCCATTCCTCCTCCTCCCCCCTTC CTCCCTCCCTCCTTCCACCCCTGCCCGGGGCGAGGCCTTTGTGGACCGAC TCGTCTCCTTGTGCTGCGCGGATTTTCGGAAAAAGGCGGGCTGTGATGCC ACAGAGAGCAAGAGAGCGATTGCCAAGGTAACCCCCTCCCTCCTCCCTCC CTCCCTCCTCGTCCTCATCACCGTGTCCACCGTGTCCAACTCCCTCCTCT TATCTTCCCTCCCTCCCTCCCTCCCTCCCCCCAGCTGAAGAAAGAGTGTG AAAACGCCCTAAAAACTCTATCTACTTCGACCACGGTGGACATTGAAATC GACTCCCTCTACGAGGGCTTCGACCTTCGGTCCGTCCCTCCCACCATCCT TCCTTCCCTCCCTTCTTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCCTC CCTCCTTTCCTCCTTCTCTCCTTCCTTCTCTCGTGTCCCCTCCTCCCTTA TTCACATTGCCCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCTTC CTTCCCTCCCTGCAGCACCCGCATTACCCGTGCGCGTTTCGAGAGTGAAA TTTTTGACATTCTCAAGGCCTGCATCTCCGCTGTAGAAGCCGCCCTTGCT GCAGCGGTGCGTCCCTTCCCTCCCTCCTTCCCTTCCTCCCTCCCTCCCTT CAACCGACCATTAACTCAGACCTACCCTTCCCTCTCCTCCCTCCCTCCCT CCCAGGGCGTGGCAAAAGAAGACGTAGGTTTGCTTCTGCTCGCTGGCGGC GCTTCCCGCGTTCCCAAACTCCAGCAATGGCTTCAAGGTATCTCCCTCCC TCCCTCCTCCTCCCTCCCTCCCTCCCTCCCTTCCTCTTTTATTCTTTATG GTGGTGTAAGGTATCTCTTCGCCTTCCCTCCCTTGACCGCATTAGCAGTC GTCCTCCCTCTCTTCCTCCCTCCCTTCCTACCTCCGACTCATCCATTCCC TTTGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGCCTCCTT CCTCTCTCCCGCGGGCAGCACGCGCATCAAATCTGTGGACACGAACCCAG AGGAGGGGGTGGCCCTGGGAGCCGCACTCCAGGTAAAAAGGGAGGAAGGG AGAGAGGAAGGGAGGGAGGAAGGGAGGGAGAGAAACAAGAACAACAGGAG CAGGAGGCAGCAACAACGACACCCCAACCTGTAATCAGCACCCTCACCCT CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCCCAG CTTCTCTCCCAAGCCGCCGCCACCGCCTCCTCCTCCTCCTCTTCCGCAGG AGGCAGCGGCGACGCTCACCCCTTCACTCACAGCCTCACTACCTCCCCTC TCTCCTTCGGCCTACTGGTCACCGACCTCCCCACAGAGGAGGGAGGGAAG GAGGGAGGGATGACGACGGCGTTTTTCAAGTCCTTCTTGAAGCACGCGTC GATTGCCTCCTCGGCGAAATCAAAAATAGGGGACAGGCAACCGTTCTTCC TGATCCATCAAGGGGAGGTACGTCTTGAGGCCCCGCCTGCCCTCCCTCCC TTCCTCCTTCCCCTCCTCCTTTGTCAAGGTTCTCTCTCTTTCTTTTTTTC CCCGTCTTATTGAAAAAACAATAATCCAAAAAACGTAAATCCTCCCCCTA CATTTTTTACATTCAATCCTCCCTCCCTCCCCTCTCTCCCTCCCTCCCTC CCTCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGTT CCTCCCCGCCTCCCAGCGTGTTCGTGTCAAAAAAAGCGCCAACGACCAGG CCGACATTTCTCTGCACGTCGTGGCTGCCGGGTCGGAGGGACCGGTTGAG GAAGGGGGGGAGGAAAGTGTCTTGACGCTGGCGGAGATTACGTACAGAGC TCCAGAGGGAGATCAAACAGAGGAGGTATGTACAGCAGAAAAAGAATCAA TCCTCTCTCCTTCCCTCCCTCTCTCTTTCCCTCCCTCTCACCTTCCCTCC CTCCCTCCGGATTTTCCTTCCTTCAGTTGGACTTGATATCCTCCATATCT CACCCTTCCCTCCTCCCTCCCTCCCTCCCTCCTCTCCTCCCTCCCTCCCC TCCCTCCCTCCCTCCCCCCTCCCTCCAGTGGGATCTCACCATGACCCTGG CCGCCGACGGCGTGCTGCGTGTCCGACTACAAGAGGTACGCCCTTCCTTT ATCCCTCCTTCCCTCCCTTCCTCCCTTCCTCCTTCTACACTTCTTGTCGC CTTCCCCCAAGCACATTTTCCCTCCTTCAATTGTTACCACATTTCCTTCC CTTTCCTTCTATGTTCCCTCTCATGCCCCCTATGCCCTCCCTCCTTTCTT CCCACACCTCCCTCCCTACTTCCCCCCTTCCTCCTCTGGCACCCACCCAC CCACCCCTCCCCTCTTCACCCCATCCCTCCATCTATCTCATGCATACTCC CCTTTCTCCCTTCCCTCTTCCTCCCTCCCTCCCTCTCCATAGAAGGACGG TGGGCAGGTCCTAAGGGACGTAGTAATTCGCGCCAAAAAAGAAACTCAAA ATTAA
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Coding sequence (CDS) from alignment at chr24:529492..533596+

>NO24G02010.1 ID=NO24G02010.1|Name=NO24G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr24:529492..533596+ (Nannochloropsis oceanica)
ATGGATAAAGCCGGAGGAGACAGCAAGCTGGTCTTGGGACTGGCCATTGG
CAGTGCGTACACCCGATCTGCTACCGCGACAGCCGCGTGCTTTCCCAAGG
AAGGCGGGCGGGAAGGGGAAAAGGATAGCGGATTTATCTTGAACCGTCCA
GAGATCGTGGTGAATGCGGACGGGGACCGCGGGACGGCCACGCTGGTGGC
GCTGCGGAAGGAGGAGCAGGATGGTGGGGGGAAGCAGAAGGAGGGAGAGT
GGTTGGTGGGGGCAGCGGCCAAGACGGCCATGGGCGGGCGCTACGCATCA
CAAGTGCAATCTTGGGGAGGTATGACAATCCTACAAGCTTTGCTTGGGGA
GAAGAAGGAGGACGAGGAGGATGAGGAAGAGGAGGAGGAAGAGGTGGTGG
ACGAGGAGGAGGAAGGGAGGGAGGAGAAGGTGGGCATGGAGGAGGTGTGC
AGCCAGTTACTGCAGCATGTAATTGAGCAGGCGGAGAACTCCAGTGGAGA
GTGCCCTTCAGAATGTGTCTTGGCTATACCCTCTTGGTGCACGGAAGAGC
ACCGTGGCGCCGCCATCCACGCCCTGAACATGGCCGGGCTGTCTGTCTTG
GGCGTCATCCGCGAGCCCCTGGCCACCCTCCTCGCCTTCCGGCAGAACGA
GGGGGAGAGAGGATGCGCAGGGCTTTTACCAATTACTCCATTCCTCCTCC
TCCCCCCTTCCTCCCTCCCTCCTTCCACCCCTGCCCGGGGCGAGGCCTTT
GTGGACCGACTCGTCTCCTTGTGCTGCGCGGATTTTCGGAAAAAGGCGGG
CTGTGATGCCACAGAGAGCAAGAGAGCGATTGCCAAGCTGAAGAAAGAGT
GTGAAAACGCCCTAAAAACTCTATCTACTTCGACCACGGTGGACATTGAA
ATCGACTCCCTCTACGAGGGCTTCGACCTTCGCACCCGCATTACCCGTGC
GCGTTTCGAGAGTGAAATTTTTGACATTCTCAAGGCCTGCATCTCCGCTG
TAGAAGCCGCCCTTGCTGCAGCGGGCGTGGCAAAAGAAGACGTAGGTTTG
CTTCTGCTCGCTGGCGGCGCTTCCCGCGTTCCCAAACTCCAGCAATGGCT
TCAAGCCTCCTTCCTCTCTCCCGCGGGCAGCACGCGCATCAAATCTGTGG
ACACGAACCCAGAGGAGGGGGTGGCCCTGGGAGCCGCACTCCAGGCCCAG
CTTCTCTCCCAAGCCGCCGCCACCGCCTCCTCCTCCTCCTCTTCCGCAGG
AGGCAGCGGCGACGCTCACCCCTTCACTCACAGCCTCACTACCTCCCCTC
TCTCCTTCGGCCTACTGGTCACCGACCTCCCCACAGAGGAGGGAGGGAAG
GAGGGAGGGATGACGACGGCGTTTTTCAAGTCCTTCTTGAAGCACGCGTC
GATTGCCTCCTCGGCGAAATCAAAAATAGGGGACAGGCAACCGTTCTTCC
TGATCCATCAAGGGGAGTTCCTCCCCGCCTCCCAGCGTGTTCGTGTCAAA
AAAAGCGCCAACGACCAGGCCGACATTTCTCTGCACGTCGTGGCTGCCGG
GTCGGAGGGACCGGTTGAGGAAGGGGGGGAGGAAAGTGTCTTGACGCTGG
CGGAGATTACGTACAGAGCTCCAGAGGGAGATCAAACAGAGGAGTGGGAT
CTCACCATGACCCTGGCCGCCGACGGCGTGCTGCGTGTCCGACTACAAGA
GAAGGACGGTGGGCAGGTCCTAAGGGACGTAGTAATTCGCGCCAAAAAAG
AAACTCAAAATTAA
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Synonyms
Publications