NO24G00770.1, NO24G00770.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G00770.1
Unique Name	NO24G00770.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	794
Alignment location	chr24:224816..226051 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:224816..226051 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO24G00770.1 vs.

BLAST of NO24G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G00770	NO24G00770	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G00770.1	NO24G00770.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G00770.1.cds1	NO24G00770.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00770.1.cds2	NO24G00770.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00770.1.cds3	NO24G00770.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00770.1.cds4	NO24G00770.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:224816..226051-
coding sequence from alignment at chr24:224816..226051-

mRNA sequence

>NO24G00770.1 ID=NO24G00770.1|Name=NO24G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=794bp
ATGAAAAAGTCCCCATCCCCGACTTCGAGCAGCAGAAGTAGCATCAGCGC
TAACGCTTTAGTGCGGAGCACTATGGCCCGAGTCTCCTCCTTGGCCCGGC
CTTCAGACGATTGTGTGGCTCGACTCATTGCACTCGAGGCCGCGACCGCT
GCCCGTAGCAGAAGGCGTGATGCAGTGACCGCTCCCGCCATGCAGAAGAA
GGCCGTTATAAACAAGAACTTTCTGGCCAACACCATCCGAAGTGTCTCCG
ACCACAACCGCCGAGAGGAGGAATCGGACTGCTGGCGGGCTCATGGGCAA
CAGAAGGTGGCGGAGGACTATGGAGGAAGGGGAAGGGGGGAGAGGCATGA
TGACGGCGATCGAAGGAGGGGAGGGTGTGGAGGGGAAAGTAGGGCGGTAG
ATCCCACCACATCTCACTCTTCCTTGTCTTTCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTT
CTGCGAAGATCCTAACAAGGAGGACAAAAAAGTGAAAGAGAAGAAGAAAG
GAGAGAAGAAGCGGCGACGTAGCCGTCGCAGTTCCACCCAGGAAAGTTAC
GGCAACAAAGAAAGGGACAAAGAGAGCGACCCCTGGCCGACGCGCAAGCG
GAAGGAAACAGACAAAAAGGCCAAGAAGAGCAAGAAGAACAAAAACGGCA
AGAAGAGGAAGAGGAACATTATTTCTTAAAAGTAGGATAAATGCATGTGA
CAAGCAACAGAAAAGCAGTATTTCAGAATATGAAAGTGGCGGAA

protein sequence of NO24G00770.1

>NO24G00770.1-protein ID=NO24G00770.1-protein|Name=NO24G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MKKSPSPTSSSRSSISANALVRSTMARVSSLARPSDDCVARLIALEAATA
ARSRRRDAVTAPAMQKKAVINKNFLANTIRSVSDHNRREEESDCWRAHGQ
QKVAEDYGGRGRGERHDDGDRRRGGCGGESRAVDPTTSHSSLSFSSSSSS
SSSSSSSSFSSSSSSSFCEDPNKEDKKVKEKKKGEKKRRRSRRSSTQESY
GNKERDKESDPWPTRKRKETDKKAKKSKKNKNGKKRKRNIIS*

mRNA from alignment at chr24:224816..226051-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G00770.1 ID=NO24G00770.1|Name=NO24G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp|location=Sequence derived from alignment at chr24:224816..226051- (Nannochloropsis oceanica)
ATGAAAAAGTCCCCATCCCCGACTTCGAGCAGCAGAAGTAGCATCAGCGC
TAACGCTTTAGTGCGGAGCACTATGGCCCGAGTCTCCTCCTTGGCCCGGC
CTTCAGACGATTGTGTGGCTCGACTCATTGCACTCGAGGTAAGTAGAGAT
ATGGACAGGCAGAGGTGAGGATGGGAAAAGATCGAGGAAATGTAGTTTTG
TTACTCCCCAATATGGACCACCTAATGACAGGCCGCGACCGCTGCCCGTA
GCAGAAGGCGTGATGCAGTGACCGCTCCCGCCATGCAGAAGAAGGCCGTT
ATAAACAAGAACTTTCTGGCCAACACCATCCGAAGGTAAGTAGAGAGAAG
TGAGGATGAGAGAAGCACGCCCGTCTTGTCTGCATGCATGCATACGGCCG
TTGCCTTATCCAGTCATATCCTTCTTCCTTCTCTCCACCACAGTGTCTCC
GACCACAACCGCCGAGAGGAGGAATCGGACTGCTGGCGGGCTCATGGGCA
ACAGAAGGTGGCGGAGGACTATGGAGGAAGGGGAAGGGGGGAGAGGCATG
ATGACGGCGATCGAAGGAGGGGAGGGTGTGGAGGGGAAAGTAGGGTAGGA
GAGGAGAGGGAGCGAAAGAGGTTACGTTCAGGCTCAAGAGGTTCGCGGAT
CGGGGACCGGAGGGAGGAGGAGGAGATTTCAGGAAGACAGAGGGGGAAGG
ATGAGGAGGATGGGAGGGGGAGGAGGAGGAGGAGGGAATTGAAGAAGGGG
GATTGTTCGAGGCAGGCGGGTGGTTGGAGGTGATGATAATGTTGTGGTGG
ATGTGTCGAAGGCAACGGTGACTGCGATAATTCAGGCGGTAGATCCCACC
ACATCTCACTCTTCCTTGTCTTTCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTTCTGCGAAG
ATCCTAACAAGGAGGACAAAAAAGTGAAAGAGAAGAAGAAAGGAGAGAAG
AAGCGGCGACGTAGCCGTCGCAGTTCCACCCAGGAAAGTTACGGCAACAA
AGAAAGGGACAAAGAGAGCGACCCCTGGCCGACGCGCAAGCGGAAGGAAA
CAGACAAAAAGGCCAAGAAGAGCAAGAAGAACAAAAACGGCAAGAAGAGG
AAGAGGAACATTATTTCTTAAAAGTAGGATAAATGCATGTGACAAGCAAC
AGAAAAGCAGTATTTCAGAATATGAAAGTGGCGGAA

Coding sequence (CDS) from alignment at chr24:224816..226051-

>NO24G00770.1 ID=NO24G00770.1|Name=NO24G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=729bp|location=Sequence derived from alignment at chr24:224816..226051- (Nannochloropsis oceanica)
ATGAAAAAGTCCCCATCCCCGACTTCGAGCAGCAGAAGTAGCATCAGCGC
TAACGCTTTAGTGCGGAGCACTATGGCCCGAGTCTCCTCCTTGGCCCGGC
CTTCAGACGATTGTGTGGCTCGACTCATTGCACTCGAGGCCGCGACCGCT
GCCCGTAGCAGAAGGCGTGATGCAGTGACCGCTCCCGCCATGCAGAAGAA
GGCCGTTATAAACAAGAACTTTCTGGCCAACACCATCCGAAGTGTCTCCG
ACCACAACCGCCGAGAGGAGGAATCGGACTGCTGGCGGGCTCATGGGCAA
CAGAAGGTGGCGGAGGACTATGGAGGAAGGGGAAGGGGGGAGAGGCATGA
TGACGGCGATCGAAGGAGGGGAGGGTGTGGAGGGGAAAGTAGGGCGGTAG
ATCCCACCACATCTCACTCTTCCTTGTCTTTCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTT
CTGCGAAGATCCTAACAAGGAGGACAAAAAAGTGAAAGAGAAGAAGAAAG
GAGAGAAGAAGCGGCGACGTAGCCGTCGCAGTTCCACCCAGGAAAGTTAC
GGCAACAAAGAAAGGGACAAAGAGAGCGACCCCTGGCCGACGCGCAAGCG
GAAGGAAACAGACAAAAAGGCCAAGAAGAGCAAGAAGAACAAAAACGGCA
AGAAGAGGAAGAGGAACATTATTTCTTAA

Synonyms

Publications