NO24G00470.1, NO24G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00470.1
Unique NameNO24G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2067
Alignment locationchr24:153241..155526 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:153241..155526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO24G00470.1 vs.
Match: EWM24317.1 (solute carrier family 35 member b1 [Nannochloropsis gaditana])

HSP 1 Score: 634.4 bits (1635), Expect = 2.900e-178
Identity = 365/473 (77.17%), Postives = 391/473 (82.66%), Query Frame = 0 
Query:    1 MDGNGSTSTSTSTTSSSALEEGALRSSMASGAKGMQPMEIDYSDSSTIPSLPVHSSATSATS-SSGSSSKSRKSLAVVRRSSSQMDINTTGGMIWLVVCFIGIMGSFIAYGIVMEFATSGGRKLHELSLIFVTSLLYSGTAYVGRYVRAEKPTTVAPSRLMVLAMTSMGSTYCSVRSLRYVIYPVQVLAKSCKPIPVMLMGAIMGKKYPLKKYVNVLIITAGVAMFMMGKQSNNSN------SSKTKENASTAGAILLFISLSFDGGTGAYEDKLMATHHVGPFDLMYNMHLGKAILAGIGLIVMGQINYFILMCHETGFLLLLLGVSGAFGQVFIFVTISKFGALTCSIMGLARKVVTLVASIYIYGHSLNGIQTLGLVVAFAAMISGFFERKGKGGHGGGHGGGGGGGKTGEVLDREGGSMSGDDGSGGGNGKNSMAALVERERREILKLEAKPLLAAADEDGEEDDEGEG 467
            M+GNG   +     S S +EEG LRSS+ASG KGMQPME++ S  +        +      S   GSS+ S K  A V+RSSSQMD+NT  GMIWL VCF+GIMGSFIAYGIVME+ATSGGRKLHELSLIFVTSLLYSGTAYVGRYVRAEKPTTVAP+RLMVLAMTSMGSTYCSVRSLRYVIYPVQVLAKSCKPIPVMLMGAIMGKKYPLKKYVNVLIITAGVAMFMMG+Q           +SK KENA+TAGAILLFISL FDGGTGAYEDKLMA HHVGPFDLMYNMHLGKAILAG+GLIV+GQINYFI MCHETGF LLLLGVSGAFGQVFIFVTISKFGALTCSIMGLARKVVTLVASIYIYGHSLNGIQTLGLVVAFAAMISGFFERKGKG HG GH GGGG     E LDREGGSM  D    GG  K+++ +LVE ERR  L+ EAKPLLAA D DG E++E EG
Sbjct:    1 MEGNGGIDSK----SGSLMEEGGLRSSLASGEKGMQPMEVEMSGPAASTLFGGDAQLLKPKSLRRGSSTSSTKPEAPVKRSSSQMDVNTASGMIWLAVCFVGIMGSFIAYGIVMEYATSGGRKLHELSLIFVTSLLYSGTAYVGRYVRAEKPTTVAPARLMVLAMTSMGSTYCSVRSLRYVIYPVQVLAKSCKPIPVMLMGAIMGKKYPLKKYVNVLIITAGVAMFMMGRQKEGGEGAEGRAASKAKENATTAGAILLFISLCFDGGTGAYEDKLMAKHHVGPFDLMYNMHLGKAILAGLGLIVLGQINYFIRMCHETGFFLLLLGVSGAFGQVFIFVTISKFGALTCSIMGLARKVVTLVASIYIYGHSLNGIQTLGLVVAFAAMISGFFERKGKGAHGHGHAGGGGNAGKTEPLDREGGSME-DGRLNGGVDKSAIRSLVEEERRAHLQSEAKPLLAATD-DGPEEEEREG 467
The following BLAST results are available for this feature:
BLAST of NO24G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24317.12.900e-17877.17solute carrier family 35 member b1 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00470NO24G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00470.1NO24G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00470.1.cds1NO24G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00470.1.cds2NO24G00470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00470.1.cds3NO24G00470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00470.1 ID=NO24G00470.1|Name=NO24G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp
CAGGTGACTCGCGCACCGGGGCCCGGGGTCTTACCCTTTTCCCTCCCCGC
AACCGGCACCACCACCATCATCATCATCATCATCACGGGCATCGACGTAG
AAGGTCCATTTTACAGGGAAAGCAAAAGGCACAAGGGGGAATGACGGTCG
ATTGGCAGGAGCAGCAGCGGCAGTAACAAAAGCAGTGAGAAGACAAGTCA
ATAAATTAGGAGGCATTTTTACGGAGGGTGTTGTAAGAGCGTGGAAAAAA
GGGATAAAGTCAAGAGATGGACGGCAACGGCAGCACCAGCACCAGCACCA
GCACCACAAGCAGCAGTGCTCTCGAGGAAGGAGCCTTGCGCAGCTCCATG
GCCAGCGGCGCCAAAGGCATGCAGCCCATGGAAATCGATTATTCAGACTC
CAGCACCATACCCAGCCTCCCCGTTCACAGCAGCGCCACCAGCGCCACCA
GCAGCAGTGGCAGCAGCAGCAAAAGTAGGAAGTCTTTGGCGGTGGTACGG
AGGAGTAGCAGTCAGATGGACATCAATACAACGGGGGGGATGATCTGGCT
GGTGGTTTGTTTTATCGGTATCATGGGCTCGTTTATTGCCTATGGAATCG
TGATGGAATTTGCGACGTCGGGAGGGAGGAAGCTGCATGAGTTGAGCTTG
ATCTTCGTGACCTCATTGCTGTACTCAGGGACGGCGTATGTAGGCCGGTA
CGTGCGTGCCGAGAAGCCGACGACGGTGGCGCCGAGTCGACTCATGGTGT
TGGCCATGACGAGTATGGGATCCACTTATTGCAGTGTGCGGAGTCTCAGA
TACGTGATCTACCCAGTTCAAGTCCTGGCCAAGAGCTGCAAGCCCATCCC
CGTAATGCTCATGGGCGCTATAATGGGCAAGAAATATCCGTTAAAAAAAT
ACGTTAATGTTTTGATTATAACGGCCGGTGTCGCCATGTTCATGATGGGA
AAGCAGTCCAACAACAGCAACAGCAGCAAAACCAAGGAGAATGCCTCGAC
AGCTGGCGCGATCTTGCTCTTTATTTCCCTGTCTTTTGACGGAGGGACCG
GGGCTTACGAGGACAAGCTGATGGCAACCCACCACGTAGGCCCCTTCGAC
CTCATGTACAACATGCACCTCGGCAAGGCGATCCTGGCCGGGATCGGGTT
GATTGTCATGGGCCAAATCAATTATTTTATCTTGATGTGCCATGAGACGG
GCTTCCTCCTTCTCCTTCTTGGGGTGAGTGGTGCCTTTGGCCAGGTGTTC
ATCTTTGTGACGATTTCGAAGTTTGGAGCCTTGACCTGCTCGATAATGGG
ATTGGCTAGGAAGGTCGTGACCCTTGTGGCATCTATATATATCTACGGTC
ATTCCTTAAACGGCATCCAGACGCTCGGGTTGGTGGTGGCCTTCGCAGCG
ATGATATCCGGTTTCTTCGAACGGAAGGGCAAGGGAGGGCATGGTGGTGG
TCATGGAGGAGGGGGAGGGGGAGGGAAGACGGGGGAGGTCTTGGATAGGG
AGGGAGGAAGTATGAGCGGTGATGATGGGAGTGGAGGAGGGAATGGGAAG
AACAGCATGGCAGCTTTGGTGGAAAGGGAGAGGAGAGAGATACTGAAGCT
GGAGGCGAAACCTTTGTTGGCGGCGGCGGATGAGGACGGGGAGGAGGATG
ACGAGGGGGAGGGAGGGCTCGTAGGAGATAGAAGATGCTCAAGACCGAAT
ACAGTGACAGTGTAAGTGGGTGAACGATTGATAATAGGTACGTGGGAGAG
ACGTAGGATAAAGCGAGGGAGTGAGAGTAAGCGTGTATGTAAACGCAGGG
AGGAGGAGAAAATGAAGGAAAAGAAGGGTAGAGAGAGGAAAAGAGAGTAA
AGAAGATGGATTGAGGGAACGAAAAACAGAAAGTTTGAAGGAAAAGCTTT
GCTCTTTCGCATATGTACTTATGGAAGTGAGCAGCAGTGAGGAAGAGCTC
AAGACTCCCCTCGCCTGTGCTACCAGGACCAGCAGCAACAGCAGGAGCCA
CGGAAAGCAACGGAGCAACGAAACCAACAACAAAAGTAAAACTACAAATT
ATTTTTCTGACTCATTG
back to top

protein sequence of NO24G00470.1

>NO24G00470.1-protein ID=NO24G00470.1-protein|Name=NO24G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MDGNGSTSTSTSTTSSSALEEGALRSSMASGAKGMQPMEIDYSDSSTIPS
LPVHSSATSATSSSGSSSKSRKSLAVVRRSSSQMDINTTGGMIWLVVCFI
GIMGSFIAYGIVMEFATSGGRKLHELSLIFVTSLLYSGTAYVGRYVRAEK
PTTVAPSRLMVLAMTSMGSTYCSVRSLRYVIYPVQVLAKSCKPIPVMLMG
AIMGKKYPLKKYVNVLIITAGVAMFMMGKQSNNSNSSKTKENASTAGAIL
LFISLSFDGGTGAYEDKLMATHHVGPFDLMYNMHLGKAILAGIGLIVMGQ
INYFILMCHETGFLLLLLGVSGAFGQVFIFVTISKFGALTCSIMGLARKV
VTLVASIYIYGHSLNGIQTLGLVVAFAAMISGFFERKGKGGHGGGHGGGG
GGGKTGEVLDREGGSMSGDDGSGGGNGKNSMAALVERERREILKLEAKPL
LAAADEDGEEDDEGEGGLVGDRRCSRPNTVTV*
back to top

mRNA from alignment at chr24:153241..155526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00470.1 ID=NO24G00470.1|Name=NO24G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp|location=Sequence derived from alignment at chr24:153241..155526- (Nannochloropsis oceanica)
CAGGTGACTCGCGCACCGGGGCCCGGGGTCTTACCCTTTTCCCTCCCCGC
AACCGGCACCACCACCATCATCATCATCATCATCACGGGCATCGACGTAG
AAGGTCCATTTTACAGGGAAAGCAAAAGGCACAAGGGGGAATGACGGTCG
ATTGGCAGGAGCAGCAGCGGCAGTAACAAAAGCAGTGAGAAGACAAGTCA
ATAAATTAGGAGGCATTTTTACGGAGGGTGTTGTAAGAGCGTGGAAAAAA
GGGATAAAGTCAAGAGATGGACGGCAACGGCAGCACCAGCACCAGCACCA
GCACCACAAGCAGCAGTGCTCTCGAGGAAGGAGCCTTGCGCAGGTAAGGA
GAAATATGTGGAAGGTAAAGGAGAGACGGACGATATCCGCATGTTCGACA
CACAGAAGCAGTAACTTACCCTCCCTCCTTCCCTTACTCCCCTCCCAATC
ACAGCTCCATGGCCAGCGGCGCCAAAGGCATGCAGCCCATGGAAATCGAT
TATTCAGACTCCAGCACCATACCCAGCCTCCCCGTTCACAGCAGCGCCAC
CAGCGCCACCAGCAGCAGTGGCAGCAGCAGCAAAAGTAGGAAGTCTTTGG
CGGTGGTACGGAGGAGTAGCAGTCAGATGGACATCAATACAACGGGGGGG
ATGATCTGGCTGGTGGTTTGTTTTATCGGTATCATGGGCTCGTTTATTGC
CTATGGAATCGTGATGGAATTTGCGACGTCGGGAGGGAGGAAGCTGCATG
AGTTGAGCTTGATCTTCGTGACCTCATTGCTGTACTCAGGGACGGCGTAT
GTAGGCCGGTACGTGCGTGCCGAGAAGCCGACGACGGTGGCGCCGAGTCG
ACTCATGGTGTTGGCCATGACGAGTATGGGATCCACTTATTGCAGTGTGC
GGAGTCTCAGGTAACGCTCAAATTATATCATTCACGTTATATTATGATTC
ATTCATCTCTTGTATATTCATTTACTGATTGAATTTTCTTCATTTCTTTC
CGCCCTCTTCATCTCCAGATACGTGATCTACCCAGTTCAAGTCCTGGCCA
AGAGCTGCAAGCCCATCCCCGTAATGCTCATGGGCGCTATAATGGGCAAG
AAATATCCGTTAAAAAAATACGTTAATGTTTTGATTATAACGGCCGGTGT
CGCCATGTTCATGATGGGAAAGCAGTCCAACAACAGCAACAGCAGCAAAA
CCAAGGAGAATGCCTCGACAGCTGGCGCGATCTTGCTCTTTATTTCCCTG
TCTTTTGACGGAGGGACCGGGGCTTACGAGGACAAGCTGATGGCAACCCA
CCACGTAGGCCCCTTCGACCTCATGTACAACATGCACCTCGGCAAGGCGA
TCCTGGCCGGGATCGGGTTGATTGTCATGGGCCAAATCAATTATTTTATC
TTGATGTGCCATGAGACGGGCTTCCTCCTTCTCCTTCTTGGGGTGAGTGG
TGCCTTTGGCCAGGTGTTCATCTTTGTGACGATTTCGAAGTTTGGAGCCT
TGACCTGCTCGATAATGGGATTGGCTAGGAAGGTCGTGACCCTTGTGGCA
TCTATATATATCTACGGTCATTCCTTAAACGGCATCCAGACGCTCGGGTT
GGTGGTGGCCTTCGCAGCGATGATATCCGGTTTCTTCGAACGGAAGGGCA
AGGGAGGGCATGGTGGTGGTCATGGAGGAGGGGGAGGGGGAGGGAAGACG
GGGGAGGTCTTGGATAGGGAGGGAGGAAGTATGAGCGGTGATGATGGGAG
TGGAGGAGGGAATGGGAAGAACAGCATGGCAGCTTTGGTGGAAAGGGAGA
GGAGAGAGATACTGAAGCTGGAGGCGAAACCTTTGTTGGCGGCGGCGGAT
GAGGACGGGGAGGAGGATGACGAGGGGGAGGGAGGGCTCGTAGGAGATAG
AAGATGCTCAAGACCGAATACAGTGACAGTGTAAGTGGGTGAACGATTGA
TAATAGGTACGTGGGAGAGACGTAGGATAAAGCGAGGGAGTGAGAGTAAG
CGTGTATGTAAACGCAGGGAGGAGGAGAAAATGAAGGAAAAGAAGGGTAG
AGAGAGGAAAAGAGAGTAAAGAAGATGGATTGAGGGAACGAAAAACAGAA
AGTTTGAAGGAAAAGCTTTGCTCTTTCGCATATGTACTTATGGAAGTGAG
CAGCAGTGAGGAAGAGCTCAAGACTCCCCTCGCCTGTGCTACCAGGACCA
GCAGCAACAGCAGGAGCCACGGAAAGCAACGGAGCAACGAAACCAACAAC
AAAAGTAAAACTACAAATTATTTTTCTGACTCATTG
back to top

Coding sequence (CDS) from alignment at chr24:153241..155526-

>NO24G00470.1 ID=NO24G00470.1|Name=NO24G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at chr24:153241..155526- (Nannochloropsis oceanica)
ATGGACGGCAACGGCAGCACCAGCACCAGCACCAGCACCACAAGCAGCAG
TGCTCTCGAGGAAGGAGCCTTGCGCAGCTCCATGGCCAGCGGCGCCAAAG
GCATGCAGCCCATGGAAATCGATTATTCAGACTCCAGCACCATACCCAGC
CTCCCCGTTCACAGCAGCGCCACCAGCGCCACCAGCAGCAGTGGCAGCAG
CAGCAAAAGTAGGAAGTCTTTGGCGGTGGTACGGAGGAGTAGCAGTCAGA
TGGACATCAATACAACGGGGGGGATGATCTGGCTGGTGGTTTGTTTTATC
GGTATCATGGGCTCGTTTATTGCCTATGGAATCGTGATGGAATTTGCGAC
GTCGGGAGGGAGGAAGCTGCATGAGTTGAGCTTGATCTTCGTGACCTCAT
TGCTGTACTCAGGGACGGCGTATGTAGGCCGGTACGTGCGTGCCGAGAAG
CCGACGACGGTGGCGCCGAGTCGACTCATGGTGTTGGCCATGACGAGTAT
GGGATCCACTTATTGCAGTGTGCGGAGTCTCAGATACGTGATCTACCCAG
TTCAAGTCCTGGCCAAGAGCTGCAAGCCCATCCCCGTAATGCTCATGGGC
GCTATAATGGGCAAGAAATATCCGTTAAAAAAATACGTTAATGTTTTGAT
TATAACGGCCGGTGTCGCCATGTTCATGATGGGAAAGCAGTCCAACAACA
GCAACAGCAGCAAAACCAAGGAGAATGCCTCGACAGCTGGCGCGATCTTG
CTCTTTATTTCCCTGTCTTTTGACGGAGGGACCGGGGCTTACGAGGACAA
GCTGATGGCAACCCACCACGTAGGCCCCTTCGACCTCATGTACAACATGC
ACCTCGGCAAGGCGATCCTGGCCGGGATCGGGTTGATTGTCATGGGCCAA
ATCAATTATTTTATCTTGATGTGCCATGAGACGGGCTTCCTCCTTCTCCT
TCTTGGGGTGAGTGGTGCCTTTGGCCAGGTGTTCATCTTTGTGACGATTT
CGAAGTTTGGAGCCTTGACCTGCTCGATAATGGGATTGGCTAGGAAGGTC
GTGACCCTTGTGGCATCTATATATATCTACGGTCATTCCTTAAACGGCAT
CCAGACGCTCGGGTTGGTGGTGGCCTTCGCAGCGATGATATCCGGTTTCT
TCGAACGGAAGGGCAAGGGAGGGCATGGTGGTGGTCATGGAGGAGGGGGA
GGGGGAGGGAAGACGGGGGAGGTCTTGGATAGGGAGGGAGGAAGTATGAG
CGGTGATGATGGGAGTGGAGGAGGGAATGGGAAGAACAGCATGGCAGCTT
TGGTGGAAAGGGAGAGGAGAGAGATACTGAAGCTGGAGGCGAAACCTTTG
TTGGCGGCGGCGGATGAGGACGGGGAGGAGGATGACGAGGGGGAGGGAGG
GCTCGTAGGAGATAGAAGATGCTCAAGACCGAATACAGTGACAGTGTAA
back to top
Synonyms
Publications