NO24G00090.1, NO24G00090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00090.1
Unique NameNO24G00090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length960
Alignment locationchr24:31211..32320 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:31211..32320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G00090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00090NO24G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00090.1NO24G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00090.1.cds1NO24G00090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00090.1.cds2NO24G00090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00090.1.cds3NO24G00090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00090.1 ID=NO24G00090.1|Name=NO24G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=960bp
ATGGAGATGAGCCACTCCCATTACCAAGCGACCAGGATGGAGGGCGAGTC
GCAGCAGCACGGGGAGGATGAGCGCGAGGGTATCGACCAGCCGGAGCACC
CGGGGCAGCAACAGCAGCGTCATCATGGTTTGGCGAAGCGTGTGACGCGT
GGAGGGGGCAAGACGGCAGGTGGGGCTGCGAAAAAAGGAAGAAGCAGCTG
TGGGGCTTTTGGAAGGGAGATCTCGCAAAATGTGCTCAAGGCACGTGAGG
AGGAAAAGCAGATGGAGGGAAGCAAGGCTGGTGGCAAGAAAAAGGAGAAG
GATGGCAAGACACCACGCTCCGGCCGTGGACGCCAGATGGCTCCTGCTCC
TTCTATTGCAAGAACAGCTGCTCTGCAATCTTTCTACCTCAGCGATCCCC
TCATTTACCATGACGAGGAGGGGGAAGACGAAGGTGGGACGGAGGAAGAT
CACAAGAAGCTGAAGAAGGGGCAGCAGCAGCAGACGCAGCAGGAGAAGGA
GGAGGAGGAGGGCTTTGGGGCGAGGACGAGGACTAGGAGAAGGAGGAATG
GCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAATGATGGAGGG
GCGGTGGTGCTTGTGAAGGCATCTACTCCAATGCGTCAGGGAGATTTCAA
GGGGAAGGAGGGAGGGGGAAGGGGGGCGGTCATGCACGTTCAAGAGCATG
ATGACGAAAGAGGGGAAGGAATGGAGGAGGAAGAGAAGGAGCAGCAGCAG
CAACAGCAGCAACAGCAGCAGCCGGCAGAGGAGTCAATGGTGGAGGGAGG
GAAGGAGGAAGGGCCGAGTGTGAAGGTGGAAGAGTCAGCTGCTACCCGCT
TCTTCTTGATTCATACTCAAGCCACAGAGGCCCTGGAGAAGCTGGACGAT
CTCCTCCTCGCTCCTCCCTTCCTCCTCCCTCCCTCTCCTCTTCGGCGGTG
GAGCTCGTAG
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protein sequence of NO24G00090.1

>NO24G00090.1-protein ID=NO24G00090.1-protein|Name=NO24G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MEMSHSHYQATRMEGESQQHGEDEREGIDQPEHPGQQQQRHHGLAKRVTR
GGGKTAGGAAKKGRSSCGAFGREISQNVLKAREEEKQMEGSKAGGKKKEK
DGKTPRSGRGRQMAPAPSIARTAALQSFYLSDPLIYHDEEGEDEGGTEED
HKKLKKGQQQQTQQEKEEEEGFGARTRTRRRRNGSRSSSSSSSSSSNDGG
AVVLVKASTPMRQGDFKGKEGGGRGAVMHVQEHDDERGEGMEEEEKEQQQ
QQQQQQQPAEESMVEGGKEEGPSVKVEESAATRFFLIHTQATEALEKLDD
LLLAPPFLLPPSPLRRWSS*
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mRNA from alignment at chr24:31211..32320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00090.1 ID=NO24G00090.1|Name=NO24G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp|location=Sequence derived from alignment at chr24:31211..32320- (Nannochloropsis oceanica)
ATGGAGATGAGCCACTCCCATTACCAAGCGACCAGGATGGAGGGCGAGTC
GCAGCAGCACGGGGAGGATGAGCGCGAGGGTATCGACCAGCCGGAGCACC
CGGGGCAGCAACAGCAGCGTCATCATGGTTTGGCGAAGCGTGTGACGCGT
GGAGGGGGCAAGACGGCAGGTGGGGCTGCGAAAAAAGGAAGAAGCAGCTG
TGGGGCTTTTGGAAGGGAGATCTCGCAAAATGTGCTCAAGGCACGTGAGG
AGGAAAAGCAGATGGAGGGAAGCAAGGCTGGTGGCAAGAAAAAGGAGAAG
GATGGTGAGTGTAGTAGAATCAAAGTACTTTCATTCCCGCATATCTCAGC
CTTGATTCCAGCGTGCGCCACTCACCTTTACTCCATTACTCCTCTCTCCC
TCCCGTCCTCCCTCTTTCCCTCCAGGCAAGACACCACGCTCCGGCCGTGG
ACGCCAGATGGCTCCTGCTCCTTCTATTGCAAGAACAGCTGCTCTGCAAT
CTTTCTACCTCAGCGATCCCCTCATTTACCATGACGAGGAGGGGGAAGAC
GAAGGTGGGACGGAGGAAGAGTTGGATGCTCCTCCCCCTCAACCAGCAGT
CACAAGAAGCTGAAGAAGGGGCAGCAGCAGCAGACGCAGCAGGAGAAGGA
GGAGGAGGAGGGCTTTGGGGCGAGGACGAGGACTAGGAGAAGGAGGAATG
GCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAATGATGGAGGG
GCGGTGGTGCTTGTGAAGGCATCTACTCCAATGCGTCAGGGAGATTTCAA
GGGGAAGGAGGGAGGGGGAAGGGGGGCGGTCATGCACGTTCAAGAGCATG
ATGACGAAAGAGGGGAAGGAATGGAGGAGGAAGAGAAGGAGCAGCAGCAG
CAACAGCAGCAACAGCAGCAGCCGGCAGAGGAGTCAATGGTGGAGGGAGG
GAAGGAGGAAGGGCCGAGTGTGAAGGTGGAAGAGTCAGCTGCTACCCGCT
TCTTCTTGATTCATACTCAAGCCACAGAGGCCCTGGAGAAGCTGGACGAT
CTCCTCCTCGCTCCTCCCTTCCTCCTCCCTCCCTCTCCTCTTCGGCGGTG
GAGCTCGTAG
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Coding sequence (CDS) from alignment at chr24:31211..32320-

>NO24G00090.1 ID=NO24G00090.1|Name=NO24G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at chr24:31211..32320- (Nannochloropsis oceanica)
ATGGAGATGAGCCACTCCCATTACCAAGCGACCAGGATGGAGGGCGAGTC
GCAGCAGCACGGGGAGGATGAGCGCGAGGGTATCGACCAGCCGGAGCACC
CGGGGCAGCAACAGCAGCGTCATCATGGTTTGGCGAAGCGTGTGACGCGT
GGAGGGGGCAAGACGGCAGGTGGGGCTGCGAAAAAAGGAAGAAGCAGCTG
TGGGGCTTTTGGAAGGGAGATCTCGCAAAATGTGCTCAAGGCACGTGAGG
AGGAAAAGCAGATGGAGGGAAGCAAGGCTGGTGGCAAGAAAAAGGAGAAG
GATGGCAAGACACCACGCTCCGGCCGTGGACGCCAGATGGCTCCTGCTCC
TTCTATTGCAAGAACAGCTGCTCTGCAATCTTTCTACCTCAGCGATCCCC
TCATTTACCATGACGAGGAGGGGGAAGACGAAGGTGGGACGGAGGAAGAT
CACAAGAAGCTGAAGAAGGGGCAGCAGCAGCAGACGCAGCAGGAGAAGGA
GGAGGAGGAGGGCTTTGGGGCGAGGACGAGGACTAGGAGAAGGAGGAATG
GCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAATGATGGAGGG
GCGGTGGTGCTTGTGAAGGCATCTACTCCAATGCGTCAGGGAGATTTCAA
GGGGAAGGAGGGAGGGGGAAGGGGGGCGGTCATGCACGTTCAAGAGCATG
ATGACGAAAGAGGGGAAGGAATGGAGGAGGAAGAGAAGGAGCAGCAGCAG
CAACAGCAGCAACAGCAGCAGCCGGCAGAGGAGTCAATGGTGGAGGGAGG
GAAGGAGGAAGGGCCGAGTGTGAAGGTGGAAGAGTCAGCTGCTACCCGCT
TCTTCTTGATTCATACTCAAGCCACAGAGGCCCTGGAGAAGCTGGACGAT
CTCCTCCTCGCTCCTCCCTTCCTCCTCCCTCCCTCTCCTCTTCGGCGGTG
GAGCTCGTAG
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Synonyms
Publications