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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr23 | genome | chr23:667217..669637 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G01850.1 vs.
Match: EWM27838.1 (oxidoreductase nad-binding domain-containing protein 1 precursor [Nannochloropsis gaditana]) HSP 1 Score: 399.8 bits (1026), Expect = 8.500e-108 Identity = 218/378 (57.67%), Postives = 265/378 (70.11%), Query Frame = 0
Query: 5 MQRRAILSPLLSSATPIAASRHLRHCPCCHHMSSSSSPPASLPSP--------LPDDPSLTRAYITAIHTLSPSVRQLDLHILCGKSNSPRAPFSFLAGQWVDLYVPNLRHCGGFSMISSPESLPLLSLAIKGSPASRSIHARWAHTSEGAKEGDVVGLRVGGGFHFQMTEEHWMKGTRLVLLAGGVGINPLMSILAHVVGWVEERE-KQQEGGKEKEEEEEEGIEKDK----------------GRFQVSLIYSAAMRAELIFEEQIKEWTKMHASWLSVLFIVTREL--------GGEGAWDGRRE--RMDGILVWEAVEGEEGERGREKALVYICGPSNMTDEMERILIGG-EEEGMEGGR-RLRKAQVVTEKWW 346
MQRRA+L P+L+S+T SRHLRHC CCHH SS+ S +S P+P LPDDPS+T A +T IHTLSP+VRQLDL +LC K R PFSF+AGQWVD +VP+L HCGGFSM+S PE LP LSLAIKGS SRS+HARWAH++ EGDVVGLRVGGGFHFQMTE HW++GTRL L AGGVGINP+MSILAHVV W+E +E K +EG +E E EG D+ F+V+L+YSAA RAEL+FEEQI++W + H+ W +VLFIVTRE GGEG RE RMD ++W+AVEG EG RGR+KALVY+CGP+ M D++E +L+G + EG GR L +QVV EKWW
Sbjct: 35 MQRRAVLKPVLASST--YPSRHLRHCSCCHHTSSTPSLHSSSPAPAENRPSASLPDDPSITHACVTGIHTLSPTVRQLDLRLLCNKELPARDPFSFVAGQWVDFFVPSLPHCGGFSMVSPPEILPRLSLAIKGSSLSRSLHARWAHST--VAEGDVVGLRVGGGFHFQMTEAHWVEGTRLTLFAGGVGINPMMSILAHVVSWIERKEVKSKEGREEGERLTGEGALDDRIARGLGVEENCAVRVQAPFRVALVYSAATRAELLFEEQIQKWAEQHSEWFTVLFIVTREKGEGKEREGGGEGGQLRYREGSRMDEKVIWDAVEGGEGIRGRKKALVYVCGPAKMIDDVEDMLLGKLKAEGAREGRCCLEASQVVAEKWW 408
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G01850.1 ID=NO23G01850.1|Name=NO23G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp GCGGATGTGGAGTTAGGGGCCGGCGCGTTAGATGGATGTGATGACGATGA TGAATTTGCCGTCTACCTTGTGTACGGCCAGAGCGGGAACTACAGCGTCC TGGTAGGAGCCCTTTATTGCCTGCGTTTAAAATGGTACCAATTTGAGCGT GCGAGCAACGTGTATGGTAAGGTGAGAGTGGGATCCAGTGTAGTGTGAGG TTGGTGTGGCGCGCACACTACCTCGCCGACGACGATGGCTTGGTGAGTGG AGAGCTCTGAAAGCACACACGTGTCCTCCGCTACATGCTTCCACGCTAAC TCATCAAGACTCTATACGCAAGCACAGCATGCCCATGCACAAGTGCGTGC ATAAGACGCTCAAAATGGCCTGCTTTTCCCTCCTCTGTGGGTGACATTTT AGGTTCTATACTCGCCTCCTCGTCGACCTCCTGCCTCCACATCCCACAGC AAAACGCTCATTAAATGAGACAGGCACCCTTTTGGCGTCCCAGTGCTTAG CAAGTGTCTCCGTTGCTCCCTTGAGCCCTGGGCATCTCTGCCTATCCTTG CCGGCACTCTTTTCATAGAACCTTTTTCATTCATATCTACACACTCCCTT TCTCGTATGCCCAATACGACGACCATAATATGCAGGAACGCATGCAAAGA CGGGCCATTCTCTCCCCATTGCTGTCGTCCGCCACCCCCATAGCAGCCAG CCGCCACCTCCGCCACTGCCCGTGCTGCCATCACATGTCATCCTCTTCCA GCCCTCCGGCATCCCTCCCTTCTCCCCTCCCGGACGACCCTTCCCTCACC CGCGCCTACATCACGGCTATTCACACTCTCAGTCCGAGTGTGCGCCAACT TGATCTCCACATTCTGTGTGGCAAGAGCAATTCGCCTCGGGCACCCTTCT CCTTCCTCGCCGGACAATGGGTTGACTTATACGTTCCAAATCTCCGACAC TGTGGAGGATTCTCCATGATCTCCTCCCCCGAATCACTCCCTCTCCTCTC ACTTGCCATCAAAGGCTCCCCTGCTTCCCGCTCTATCCACGCACGCTGGG CGCACACATCAGAAGGCGCAAAGGAAGGCGATGTGGTCGGCCTAAGGGTA GGAGGAGGATTTCACTTTCAAATGACGGAAGAGCACTGGATGAAGGGGAC AAGGCTGGTGCTGCTTGCGGGAGGGGTGGGCATTAATCCACTCATGAGCA TTTTGGCGCACGTGGTTGGGTGGGTGGAAGAGAGGGAAAAGCAGCAGGAG GGTGGCAAGGAGAAAGAGGAAGAGGAGGAGGAAGGGATAGAGAAGGACAA GGGTAGGTTTCAGGTGTCTCTCATTTACAGTGCAGCTATGCGAGCAGAGC TAATTTTTGAGGAACAGATAAAGGAGTGGACAAAGATGCATGCCTCGTGG CTGTCCGTGTTGTTTATCGTGACGAGGGAACTTGGAGGGGAGGGGGCGTG GGACGGACGGAGGGAGAGAATGGATGGGATATTAGTGTGGGAGGCCGTTG AAGGAGAAGAAGGGGAGAGAGGGAGGGAGAAGGCATTGGTGTACATATGT GGGCCGTCGAACATGACAGATGAAATGGAGAGGATCCTGATTGGTGGGGA AGAGGAAGGAATGGAGGGAGGGAGGCGTTTGAGGAAGGCGCAGGTGGTAA CTGAGAAGTGGTGGTAAGGGTAGAAAAGAGAAGCGAGTGGTGTGAAGTAG TTCCCCTAAAATCACAATGAAGTCAACGAAAGGTCAGACAAGGAGTTACT TTCGGCTGCCTCACCACCACCGTTAATTCAATTTTGGTCCTATCGGAGAT TATCAGATCTGAACGCATCGGCAGGACAAGAGGTGGCTCTCGGGTGGGAT TGCAAAAAGATGCCGGCCTGGGTGGACGAGGACCGAGGCTCAAGGTCCAG ACAGGAGAAGGATGGACATCAGTCAGCGAAATGGTTAGATAGACCCAATA TAAGACGATTAAAGGATTCTTCGCCGCGCAGAGGCATCTCCTGCGCCAAG GGCCATCCGCATCTCGAATTCATCAGGGTTCTGCGAGCTTGTGGCGTGCG ACAAAGCAAGCGTCACATTTTACCTGGGTTGACCACGGCACACGGATGAA AGGCTTGGGTCACGGGAAAAAAGATCTGTAATCACCGGGTCTGTAAACGA AGGACTGATATCCAACTGATCCCCGCACAGCTGTAAGACCTACATATAAT CCAGGAGGCTGAAGGATCCTATACGAAATTTTTTTCGTCCAAATAATCAA AAGATTCAATACCTGCAAAACTGGTCCCGAGGCAAAAGAAAGGTCACCAC CACCACCACCAGCAGAGCATCACCACCACCACCACCACCACCGTTGCCAT CACTACAGTCTTCTTTGCGTCCCTTGGGCGTACCTTAGCTGGGTTTCAAC GAAAAGGAAACACAACTTCAG back to topprotein sequence of NO23G01850.1 >NO23G01850.1-protein ID=NO23G01850.1-protein|Name=NO23G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp MQERMQRRAILSPLLSSATPIAASRHLRHCPCCHHMSSSSSPPASLPSPL PDDPSLTRAYITAIHTLSPSVRQLDLHILCGKSNSPRAPFSFLAGQWVDL YVPNLRHCGGFSMISSPESLPLLSLAIKGSPASRSIHARWAHTSEGAKEG DVVGLRVGGGFHFQMTEEHWMKGTRLVLLAGGVGINPLMSILAHVVGWVE EREKQQEGGKEKEEEEEEGIEKDKGRFQVSLIYSAAMRAELIFEEQIKEW TKMHASWLSVLFIVTRELGGEGAWDGRRERMDGILVWEAVEGEEGERGRE KALVYICGPSNMTDEMERILIGGEEEGMEGGRRLRKAQVVTEKWW* back to topmRNA from alignment at chr23:667217..669637+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G01850.1 ID=NO23G01850.1|Name=NO23G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp|location=Sequence derived from alignment at chr23:667217..669637+ (Nannochloropsis oceanica) GCGGATGTGGAGTTAGGGGCCGGCGCGTTAGATGGATGTGATGACGATGA
TGAATTTGCCGTCTACCTTGTGTACGGCCAGAGCGGGAACTACAGCGTCC
TGGTAGGAGCCCTTTATTGCCTGCGTTTAAAATGGTACCAATTTGAGCGT
GCGAGCAACGTGTATGGTAAGGTGAGAGTGGGATCCAGTGTAGTGTGAGG
TTGGTGTGGCGCGCACACTACCTCGCCGACGACGATGGCTTGGTGAGTGG
AGAGCTCTGAAAGCACACACGTGTCCTCCGCTACATGCTTCCACGCTAAC
TCATCAAGACTCTATACGCAAGCACAGCATGCCCATGCACAAGTGCGTGC
ATAAGACGCTCAAAATGGCCTGCTTTTCCCTCCTCTGTGGGTGACATTTT
AGGTTCTATACTCGCCTCCTCGTCGACCTCCTGCCTCCACATCCCACAGC
AAAACGCTCATTAAATGAGACAGGCACCCTTTTGGCGTCCCAGTGCTTAG
CAAGTGTCTCCGTTGCTCCCTTGAGCCCTGGGCATCTCTGCCTATCCTTG
CCGGCACTCTTTTCATAGAACCTTTTTCATTCATATCTACACACTCCCTT
TCTCGTATGCCCAATACGACGACCATAATATGCAGGAACGCATGCAAAGA
CGGGCCATTCTCTCCCCATTGCTGTCGTCCGCCACCCCCATAGCAGCCAG
CCGCCACCTCCGCCACTGCCCGTGCTGCCATCACATGTCATCCTCTTCCA
GCCCTCCGGCATCCCTCCCTTCTCCCCTCCCGGACGACCCTTCCCTCACC
CGCGCCTACATCACGGCTATTCACACTCTCAGTCCGAGTGTGCGCCAACT
TGATCTCCACATTCTGTGTGGCAAGAGCAATTCGCCTCGGGCACCCTTCT
CCTTCCTCGCCGGACAATGGGTTGACTTATACGTTCCAAATCTCCGACAC
TGTGGAGGATTCTCCATGATCTCCTCCCCCGAATCACTCCCTCTCCTCTC
ACTTGCCATCAAAGGCTCCCCTGCTTCCCGCTCTATCCACGCACGCTGGG
CGCACACATCAGAAGGCGCAAAGGAAGGCGATGTGGTCGGCCTAAGGGTA
GGAGGAGGATTTCACTTTCAAATGACGGAAGAGCACTGGATGAAGGGGAC
AAGGCTGGTGCTGCTTGCGGGAGGGGTGGGCATTAATCCACTCATGAGCA
TTTTGGCGCACGTGGTTGGGTGGGTGGAAGAGAGGGAAAAGCAGCAGGAG
GGTGGCAAGGAGAAAGAGGAAGAGGAGGAGGAAGGGATAGAGAAGGACAA
GGGTAGGTTTCAGGTGTCTCTCATTTACAGTGCAGCTATGCGAGCAGAGC
TAATTTTTGAGGAACAGATAAAGGAGTGGACAAAGATGCATGCCTCGTGG
CTGTCCGTGTTGTTTATCGTGACGAGGGAACTTGGAGGGGAGGGGGCGTG
GGACGGACGGAGGGAGAGAATGGATGGGATATTAGTGTGGGAGGCCGTTG
AAGGAGAAGAAGGGGAGAGAGGGAGGGAGAAGGCATTGGTGTACATATGT
GGGCCGTCGAACATGACAGATGAAATGGAGAGGATCCTGATTGGTGGGGA
AGAGGAAGGAATGGAGGGAGGGAGGCGTTTGAGGAAGGCGCAGGTGGTAA
CTGAGAAGTGGTGGTAAGGGTAGAAAAGAGAAGCGAGTGGTGTGAAGTAG
TTCCCCTAAAATCACAATGAAGTCAACGAAAGGTCAGACAAGGAGTTACT
TTCGGCTGCCTCACCACCACCGTTAATTCAATTTTGGTCCTATCGGAGAT
TATCAGATCTGAACGCATCGGCAGGACAAGAGGTGGCTCTCGGGTGGGAT
TGCAAAAAGATGCCGGCCTGGGTGGACGAGGACCGAGGCTCAAGGTCCAG
ACAGGAGAAGGATGGACATCAGTCAGCGAAATGGTTAGATAGACCCAATA
TAAGACGATTAAAGGATTCTTCGCCGCGCAGAGGCATCTCCTGCGCCAAG
GGCCATCCGCATCTCGAATTCATCAGGGTTCTGCGAGCTTGTGGCGTGCG
ACAAAGCAAGCGTCACATTTTACCTGGGTTGACCACGGCACACGGATGAA
AGGCTTGGGTCACGGGAAAAAAGATCTGTAATCACCGGGTCTGTAAACGA
AGGACTGATATCCAACTGATCCCCGCACAGCTGTAAGACCTACATATAAT
CCAGGAGGCTGAAGGATCCTATACGAAATTTTTTTCGTCCAAATAATCAA
AAGATTCAATACCTGCAAAACTGGTCCCGAGGCAAAAGAAAGGTCACCAC
CACCACCACCAGCAGAGCATCACCACCACCACCACCACCACCGTTGCCAT
CACTACAGTCTTCTTTGCGTCCCTTGGGCGTACCTTAGCTGGGTTTCAAC
GAAAAGGAAACACAACTTCAG back to topCoding sequence (CDS) from alignment at chr23:667217..669637+ >NO23G01850.1 ID=NO23G01850.1|Name=NO23G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr23:667217..669637+ (Nannochloropsis oceanica) ATGCAGGAACGCATGCAAAGACGGGCCATTCTCTCCCCATTGCTGTCGTC CGCCACCCCCATAGCAGCCAGCCGCCACCTCCGCCACTGCCCGTGCTGCC ATCACATGTCATCCTCTTCCAGCCCTCCGGCATCCCTCCCTTCTCCCCTC CCGGACGACCCTTCCCTCACCCGCGCCTACATCACGGCTATTCACACTCT CAGTCCGAGTGTGCGCCAACTTGATCTCCACATTCTGTGTGGCAAGAGCA ATTCGCCTCGGGCACCCTTCTCCTTCCTCGCCGGACAATGGGTTGACTTA TACGTTCCAAATCTCCGACACTGTGGAGGATTCTCCATGATCTCCTCCCC CGAATCACTCCCTCTCCTCTCACTTGCCATCAAAGGCTCCCCTGCTTCCC GCTCTATCCACGCACGCTGGGCGCACACATCAGAAGGCGCAAAGGAAGGC GATGTGGTCGGCCTAAGGGTAGGAGGAGGATTTCACTTTCAAATGACGGA AGAGCACTGGATGAAGGGGACAAGGCTGGTGCTGCTTGCGGGAGGGGTGG GCATTAATCCACTCATGAGCATTTTGGCGCACGTGGTTGGGTGGGTGGAA GAGAGGGAAAAGCAGCAGGAGGGTGGCAAGGAGAAAGAGGAAGAGGAGGA GGAAGGGATAGAGAAGGACAAGGGTAGGTTTCAGGTGTCTCTCATTTACA GTGCAGCTATGCGAGCAGAGCTAATTTTTGAGGAACAGATAAAGGAGTGG ACAAAGATGCATGCCTCGTGGCTGTCCGTGTTGTTTATCGTGACGAGGGA ACTTGGAGGGGAGGGGGCGTGGGACGGACGGAGGGAGAGAATGGATGGGA TATTAGTGTGGGAGGCCGTTGAAGGAGAAGAAGGGGAGAGAGGGAGGGAG AAGGCATTGGTGTACATATGTGGGCCGTCGAACATGACAGATGAAATGGA GAGGATCCTGATTGGTGGGGAAGAGGAAGGAATGGAGGGAGGGAGGCGTT TGAGGAAGGCGCAGGTGGTAACTGAGAAGTGGTGGTAA back to top
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