NO23G01830.1, NO23G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01830.1
Unique NameNO23G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1464
Alignment locationchr23:660248..661884 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:660248..661884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01830.1 vs.
Match: EWM27776.1 (folic acid synthesis protein [Nannochloropsis gaditana])

HSP 1 Score: 573.2 bits (1476), Expect = 7.900e-160
Identity = 298/447 (66.67%), Postives = 353/447 (78.97%), Query Frame = 0 
Query:   65 PTLGHVQATSGLFESKAQYVTEQPDFLNAVCRIQTLLPPLALLSRLQEIEKMLGRVKGTQRFGPRTLDLDILYYHEDDDPSKPITFEKHGEKKGSEEGSLFVPHVRLHEREFVLRPLAELAPSLRHPSQEQITVKEMLRACARSRSEDTPPL-------------------------TSTVVMGILNATPDSFSDGGIDAESVEAAVERAVRMREEGAGIIDIGGESTRPGADEVGEEEELRRVVPIIQGIRAHDKDTLLSIDTRRAGVARAAVEAGVDIVNDVSGGGFDSKMLATVAALDVPYIIMHMRGTPQTMMQRQHSTYNEDAVEEVCGELWGAVGRAEEEGVRRWSMLVDPGIGFAKGLEVNMALLRGLDCVCERMVGLPVLVGVSRKKFLGTLCDEPRAEERDVMTSVVNAVAISRGAAMVRVHNVPMAVQTVRLADSLR 487
            PT+GHVQ+ SGL++SKAQYVTEQPDFLNAVC+IQT L P  LL RL+EIE+ LGRVK  QRFGPR +DLDILYYHED+DPS+ IT  + GE+ GS+EGSLFVPH RLHEREFVLRPLAELAP L HP +  +TV++ML AC  SRSE + PL                         T ++VMGILNATPDSFSDGG D   V +AVERA+ MR++GA IIDIGGESTRPGA EV E++EL RV+PII+GIRA DK+ LLSIDTRRA +A+AAVEAG D++NDVSGG FDS+ML  VAAL+VPY+IMH RGTPQTM +  H+TY++D V +V  EL  AV RAE +GVRRWSM+VDPGIGFAK LE N+ALLRGLD + E + GLP+LVG SRK+F+GTLC E +A++RDV TSVVNAVAI RGAA++RVHNV MA QTVRLAD+LR
Sbjct:   17 PTIGHVQSISGLYQSKAQYVTEQPDFLNAVCQIQTTLSPFGLLDRLKEIERRLGRVKAAQRFGPRAVDLDILYYHEDEDPSRIITVARQGERNGSDEGSLFVPHTRLHEREFVLRPLAELAPWLSHPLRGNLTVRQMLGACEESRSETSSPLVRVLPLRWQEGDNMLLLPLDNKHRGTPSLVMGILNATPDSFSDGGKDGGCVNSAVERALGMRDQGATIIDIGGESTRPGASEVEEKKELGRVLPIIEGIRAQDKNVLLSIDTRRAVIAQAAVEAGADVINDVSGGAFDSEMLPAVAALNVPYVIMHTRGTPQTMTEAVHTTYSKDPVGDVVRELRRAVRRAERKGVRRWSMIVDPGIGFAKDLETNIALLRGLDRLNEEIAGLPLLVGASRKRFIGTLCGETQADKRDVGTSVVNAVAILRGAALLRVHNVAMARQTVRLADTLR 463
The following BLAST results are available for this feature:
BLAST of NO23G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27776.17.900e-16066.67folic acid synthesis protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01830NO23G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01830.1NO23G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01830.1.cds1NO23G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01830.1.cds2NO23G01830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01830.1.cds3NO23G01830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01830.1 ID=NO23G01830.1|Name=NO23G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp
ATGTCCACACATTTTTTGGGTCGCTTATCGTCGTCCTTGATGGGTCTTCG
GACAGGTCGTGCGGATACTTTGGCGTGGGCTACCCGACATCGCCTACCCC
ACCGCCGGCCCTACCACGTCTATGTCGCCCTTGGCAGCAATCTGGGGGAT
CGGGCGCTTAATCTACAGCGAGCCGTGGAGGCACTCAATGAGCCCACCCT
GGGCCACGTCCAAGCCACCTCGGGCCTCTTTGAGTCCAAAGCCCAGTATG
TGACGGAGCAACCCGACTTTCTCAATGCTGTCTGTAGGATTCAGACGCTT
CTCCCTCCCCTGGCCCTCCTCTCTCGCCTCCAAGAGATTGAGAAGATGCT
TGGCCGGGTAAAAGGCACTCAGCGCTTCGGTCCCAGAACCTTGGACTTGG
ACATTCTCTACTACCATGAAGATGACGATCCGTCTAAGCCTATCACCTTC
GAGAAGCACGGCGAGAAAAAGGGCTCCGAGGAAGGGTCGCTTTTCGTGCC
GCACGTCCGATTGCATGAGCGAGAGTTTGTGTTGCGTCCATTGGCGGAGC
TGGCGCCCTCCCTCCGTCATCCCTCACAAGAGCAGATCACTGTAAAAGAA
ATGCTACGGGCTTGTGCTCGGAGCCGCTCAGAGGATACACCACCCTTGAC
CTCCACAGTAGTGATGGGCATTCTGAATGCTACCCCTGACAGCTTTAGTG
ACGGAGGGATCGATGCAGAGAGCGTGGAGGCAGCTGTGGAGAGGGCCGTG
CGGATGCGGGAGGAGGGGGCCGGGATCATTGACATAGGGGGTGAGTCGAC
GAGGCCTGGGGCCGATGAAGTGGGAGAGGAGGAGGAGCTCCGGCGAGTGG
TGCCTATCATTCAGGGAATTCGCGCGCATGACAAAGACACGCTGCTTTCG
ATTGATACAAGGAGAGCAGGGGTGGCCCGAGCAGCGGTGGAGGCGGGGGT
GGACATCGTTAATGATGTGTCCGGGGGAGGGTTTGATTCAAAAATGTTGG
CAACAGTCGCGGCATTGGATGTGCCCTACATAATTATGCACATGCGGGGT
ACTCCCCAGACGATGATGCAGAGACAGCACAGTACATACAATGAGGATGC
TGTGGAAGAGGTATGTGGGGAGCTGTGGGGGGCGGTGGGGAGGGCGGAGG
AGGAGGGAGTGAGGAGATGGTCGATGCTGGTGGACCCGGGCATTGGGTTT
GCCAAAGGCCTGGAGGTGAACATGGCCTTGCTGCGAGGATTGGACTGTGT
GTGTGAAAGGATGGTAGGGCTTCCGGTGCTAGTGGGGGTCAGTCGAAAGA
AATTTTTGGGCACACTGTGCGACGAGCCGAGGGCAGAGGAGAGGGACGTG
ATGACGAGCGTGGTGAATGCGGTGGCTATTTCGCGAGGGGCGGCGATGGT
GCGTGTGCACAACGTGCCCATGGCCGTTCAGACCGTACGGTTGGCGGATT
CGTTGCGTAAATGA
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protein sequence of NO23G01830.1

>NO23G01830.1-protein ID=NO23G01830.1-protein|Name=NO23G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MSTHFLGRLSSSLMGLRTGRADTLAWATRHRLPHRRPYHVYVALGSNLGD
RALNLQRAVEALNEPTLGHVQATSGLFESKAQYVTEQPDFLNAVCRIQTL
LPPLALLSRLQEIEKMLGRVKGTQRFGPRTLDLDILYYHEDDDPSKPITF
EKHGEKKGSEEGSLFVPHVRLHEREFVLRPLAELAPSLRHPSQEQITVKE
MLRACARSRSEDTPPLTSTVVMGILNATPDSFSDGGIDAESVEAAVERAV
RMREEGAGIIDIGGESTRPGADEVGEEEELRRVVPIIQGIRAHDKDTLLS
IDTRRAGVARAAVEAGVDIVNDVSGGGFDSKMLATVAALDVPYIIMHMRG
TPQTMMQRQHSTYNEDAVEEVCGELWGAVGRAEEEGVRRWSMLVDPGIGF
AKGLEVNMALLRGLDCVCERMVGLPVLVGVSRKKFLGTLCDEPRAEERDV
MTSVVNAVAISRGAAMVRVHNVPMAVQTVRLADSLRK*
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mRNA from alignment at chr23:660248..661884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01830.1 ID=NO23G01830.1|Name=NO23G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp|location=Sequence derived from alignment at chr23:660248..661884+ (Nannochloropsis oceanica)
ATGTCCACACATTTTTTGGGTCGCTTATCGTCGTCCTTGATGGGTCTTCG
GACAGGTCGTGCGGATACTTTGGCGTGGGCTACCCGACATCGCCTACCCC
ACCGCCGGCCCTACCACGTCTATGTCGCCCTTGGCAGCAATCTGGGGGAT
CGGGCGCTTAATCTACAGCGAGCCGTGGAGGCACTCAATGAGGTAAGGAT
TTGTTCGGTGTTGGTTTGACCCTTGACCCTTCCTTCCCTTTCTTAGAAAC
CTCAAAAACCTCCCCACTTCCAAACATAGCCCACCCTGGGCCACGTCCAA
GCCACCTCGGGCCTCTTTGAGTCCAAAGCCCAGTATGTGACGGAGCAACC
CGACTTTCTCAATGCTGTCTGTAGGATTCAGACGCTTCTCCCTCCCCTGG
CCCTCCTCTCTCGCCTCCAAGAGATTGAGAAGATGCTTGGCCGGGTAAAA
GGCACTCAGCGCTTCGGTCCCAGAACCTTGGACTTGGACATTCTCTACTA
CCATGAAGATGACGATCCGTCTAAGCCTATCACCTTCGAGAAGCACGGCG
AGAAAAAGGGCTCCGAGGAAGGGTCGCTTTTCGTGCCGCACGTCCGATTG
CATGAGCGAGAGTTTGTGTTGCGTCCATTGGCGGAGCTGGCGCCCTCCCT
CCGTCATCCCTCACAAGAGCAGATCACTGTAAAAGAAATGCTACGGGCTT
GTGCTCGGAGCCGCTCAGAGGATACACCACCCTTGGTAAGGGTGTTGCCA
TTGAAAAGGCGGAGGGGGGGGGGAGGGAGAAGGGAAGCCTGCTGCTGCCC
CTCGACCCGGCGCATAATAAGACCTCCACAGTAGTGATGGGCATTCTGAA
TGCTACCCCTGACAGCTTTAGTGACGGAGGGATCGATGCAGAGAGCGTGG
AGGCAGCTGTGGAGAGGGCCGTGCGGATGCGGGAGGAGGGGGCCGGGATC
ATTGACATAGGGGGTGAGTCGACGAGGCCTGGGGCCGATGAAGTGGGAGA
GGAGGAGGAGCTCCGGCGAGTGGTGCCTATCATTCAGGGAATTCGCGCGC
ATGACAAAGACACGCTGCTTTCGATTGATACAAGGAGAGCAGGGGTGGCC
CGAGCAGCGGTGGAGGCGGGGGTGGACATCGTTAATGATGTGTCCGGGGG
AGGGTTTGATTCAAAAATGTTGGCAACAGTCGCGGCATTGGATGTGCCCT
ACATAATTATGCACATGCGGGGTACTCCCCAGACGATGATGCAGAGACAG
CACAGTACATACAATGAGGATGCTGTGGAAGAGGTATGTGGGGAGCTGTG
GGGGGCGGTGGGGAGGGCGGAGGAGGAGGGAGTGAGGAGATGGTCGATGC
TGGTGGACCCGGGCATTGGGTTTGCCAAAGGCCTGGAGGTGAACATGGCC
TTGCTGCGAGGATTGGACTGTGTGTGTGAAAGGATGGTAGGGCTTCCGGT
GCTAGTGGGGGTCAGTCGAAAGAAATTTTTGGGCACACTGTGCGACGAGC
CGAGGGCAGAGGAGAGGGACGTGATGACGAGCGTGGTGAATGCGGTGGCT
ATTTCGCGAGGGGCGGCGATGGTGCGTGTGCACAACGTGCCCATGGCCGT
TCAGACCGTACGGTTGGCGGATTCGTTGCGTAAATGA
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Coding sequence (CDS) from alignment at chr23:660248..661884+

>NO23G01830.1 ID=NO23G01830.1|Name=NO23G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at chr23:660248..661884+ (Nannochloropsis oceanica)
ATGTCCACACATTTTTTGGGTCGCTTATCGTCGTCCTTGATGGGTCTTCG
GACAGGTCGTGCGGATACTTTGGCGTGGGCTACCCGACATCGCCTACCCC
ACCGCCGGCCCTACCACGTCTATGTCGCCCTTGGCAGCAATCTGGGGGAT
CGGGCGCTTAATCTACAGCGAGCCGTGGAGGCACTCAATGAGCCCACCCT
GGGCCACGTCCAAGCCACCTCGGGCCTCTTTGAGTCCAAAGCCCAGTATG
TGACGGAGCAACCCGACTTTCTCAATGCTGTCTGTAGGATTCAGACGCTT
CTCCCTCCCCTGGCCCTCCTCTCTCGCCTCCAAGAGATTGAGAAGATGCT
TGGCCGGGTAAAAGGCACTCAGCGCTTCGGTCCCAGAACCTTGGACTTGG
ACATTCTCTACTACCATGAAGATGACGATCCGTCTAAGCCTATCACCTTC
GAGAAGCACGGCGAGAAAAAGGGCTCCGAGGAAGGGTCGCTTTTCGTGCC
GCACGTCCGATTGCATGAGCGAGAGTTTGTGTTGCGTCCATTGGCGGAGC
TGGCGCCCTCCCTCCGTCATCCCTCACAAGAGCAGATCACTGTAAAAGAA
ATGCTACGGGCTTGTGCTCGGAGCCGCTCAGAGGATACACCACCCTTGAC
CTCCACAGTAGTGATGGGCATTCTGAATGCTACCCCTGACAGCTTTAGTG
ACGGAGGGATCGATGCAGAGAGCGTGGAGGCAGCTGTGGAGAGGGCCGTG
CGGATGCGGGAGGAGGGGGCCGGGATCATTGACATAGGGGGTGAGTCGAC
GAGGCCTGGGGCCGATGAAGTGGGAGAGGAGGAGGAGCTCCGGCGAGTGG
TGCCTATCATTCAGGGAATTCGCGCGCATGACAAAGACACGCTGCTTTCG
ATTGATACAAGGAGAGCAGGGGTGGCCCGAGCAGCGGTGGAGGCGGGGGT
GGACATCGTTAATGATGTGTCCGGGGGAGGGTTTGATTCAAAAATGTTGG
CAACAGTCGCGGCATTGGATGTGCCCTACATAATTATGCACATGCGGGGT
ACTCCCCAGACGATGATGCAGAGACAGCACAGTACATACAATGAGGATGC
TGTGGAAGAGGTATGTGGGGAGCTGTGGGGGGCGGTGGGGAGGGCGGAGG
AGGAGGGAGTGAGGAGATGGTCGATGCTGGTGGACCCGGGCATTGGGTTT
GCCAAAGGCCTGGAGGTGAACATGGCCTTGCTGCGAGGATTGGACTGTGT
GTGTGAAAGGATGGTAGGGCTTCCGGTGCTAGTGGGGGTCAGTCGAAAGA
AATTTTTGGGCACACTGTGCGACGAGCCGAGGGCAGAGGAGAGGGACGTG
ATGACGAGCGTGGTGAATGCGGTGGCTATTTCGCGAGGGGCGGCGATGGT
GCGTGTGCACAACGTGCCCATGGCCGTTCAGACCGTACGGTTGGCGGATT
CGTTGCGTAAATGA
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Synonyms
Publications