NO23G01580.3, NO23G01580.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G01580.3
Unique Name	NO23G01580.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1413
Alignment location	chr23:581927..584658 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:581927..584658 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO23G01580.3 vs.
Match: EWM27829.1 (amidohydrolase 2 [Nannochloropsis gaditana])

HSP 1 Score: 442.6 bits (1137), Expect = 9.600e-121
Identity = 207/266 (77.82%), Postives = 227/266 (85.34%), Query Frame = 0

Query:    1 MAAVADAHPTRILGVALLPTGHLK----EKEEGGTEGESEKGRDILMEAYTHAVDVCGLDGVALFVGPLSAPLDHPGFEPLWKQCQEQGLPVWVHPNRPQFYPDYEAYRGKGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYPDLKVVTHHHGGMIPFFTDRFTTQSQNFDDTESLTLLQDMRKFYCDTATFGVAPLNIRQALEFFEPGRVLFGTDTPMDMAAPGSFIKASKTGVLKSEVSPEIIKKVWSENFWTMMQKRVESK 263
            MAAV  +H TR LGVALLPTGHLK    E EE G   E + G DILMEAY HAV+ C LDGVALFVGPLS+PLDHPGFE LWK+C+E G+PVW+HPNRPQFYPDYEAYRGKGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYP+LKVVTHHHGGMIPFFTDRF TQSQNFDDTE L LL DM+KFYCDTATFG+APLNIRQALEFFE GRVLFGTDTPMDMA PGSF   SK GVL+   + +++ K+W +NFW MM+KR+E K
Sbjct:   41 MAAVVQSHSTRFLGVALLPTGHLKGPGKEDEEEGASHEKD-GMDILMEAYKHAVETCSLDGVALFVGPLSSPLDHPGFEALWKRCEEDGVPVWLHPNRPQFYPDYEAYRGKGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYPNLKVVTHHHGGMIPFFTDRFITQSQNFDDTEGLALLDDMKKFYCDTATFGLAPLNIRQALEFFESGRVLFGTDTPMDMAEPGSFTSTSKGGVLQCGAAQDVMDKIWGQNFWVMMEKRLELK 305

The following BLAST results are available for this feature:

BLAST of NO23G01580.3 vs.

BLAST of NO23G01580.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27829.1	9.600e-121	77.82	amidohydrolase 2 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G01580	NO23G01580	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01580.3	NO23G01580.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01580.3.cds1	NO23G01580.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01580.3.cds2	NO23G01580.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01580.3.cds3	NO23G01580.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01580.3.cds4	NO23G01580.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01580.3.cds5	NO23G01580.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01580.3.cds6	NO23G01580.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01580.3.cds7	NO23G01580.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:581927..584658+
coding sequence from alignment at chr23:581927..584658+

mRNA sequence

>NO23G01580.3 ID=NO23G01580.3|Name=NO23G01580.3|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
AAAAACACATGCAGGGCTGCTGACACACCATGGCGACCTCCTCTCCCCCT
CCACCTTCAACTGCTCCGACTACCGGCGTCGTCGATGCCTACACGCATTA
TGCACCCTTAGCCCTCACGAGTTACCTCCAGGATGAATGCAATGACGGGA
AGCCCTTGGTATTTGCCAAGCTCTTTGATCGTATCCCCCTTTTAACTGAC
ATGGCTGCACGACTTGCCTTCATGGACGCCCACCACATCGATACCCACGT
CCTCGTACCTCTCCCCTGGTTGGAAATCGTTCCTGGCTGCCATAGTAGTA
AAGAGAAGTAAAAAGGGAGGGAGGGGTAGAGAGGGAGGGAGAAGGGTTAG
GGAGAGGAAAAGATGAAAGGCATCATGAAATATAGGCGGTTGCCAACAAC
ACACAGGCCTACTTAATCCTTCCCTCCCCCTCGTTCCCTCCCTCCCTCCT
TTCCAGGGCACTTGAGGCCTGCAAGCGCGCCAACGTCGAAATGGCAGCCG
TGGCCGACGCACATCCTACCCGGATTTTGGGCGTTGCCCTCCTCCCCACC
GGGCACCTCAAGGAGAAAGAAGAGGGAGGGACGGAGGGAGAGAGCGAAAA
AGGGAGGGACATTTTGATGGAAGCATACACGCACGCGGTAGACGTGTGTG
GGTTGGACGGGGTGGCACTCTTTGTAGGCCCCCTCTCCGCCCCTCTCGAC
CACCCCGGCTTCGAGCCTCTGTGGAAGCAGTGCCAAGAGCAGGGCCTGCC
TGTCTGGGTCCACCCCAACCGACCGCAGTTCTATCCCGACTACGAGGCCT
ACAGGGGCAAGGGTGGAAGCCTCCACCAAATATGGAACACATTAGGCTGG
GTTTACGACACGAGCGTGGCGATGGTCCACATGGTCATGGCCGGCGTCTT
CCAACGCTACCCGGATTTGAAGGTCGTGACCCACCACCACGGGGGCATGA
TTCCCTTCTTCACAGACCGCTTCACCACCCAAAGCCAGAACTTCGACGAC
ACAGAGAGCCTGACCCTGCTCCAGGACATGAGAAAATTCTACTGCGACAC
TGCCACCTTTGGCGTGGCCCCGCTCAACATTCGACAGGCCCTCGAGTTTT
TCGAGCCCGGTCGTGTCTTGTTCGGGACTGACACTCCTATGGACATGGCA
GCCCCCGGGTCTTTCATCAAGGCGAGCAAGACGGGAGTGCTGAAGAGTGA
GGTCTCGCCCGAGATAATTAAAAAAGTTTGGAGTGAAAACTTCTGGACCA
TGATGCAGAAACGCGTGGAAAGCAAAGGAGGGATAGGGGGAGGGAAGGCA
GGAGGGGGAAAGAAAAGAAAAGAAAGAGCTGATAGTGAGGAGGCAAGTTT
GAGTCACCCATAAATCGGCTTGTGAAGGTGAAAAAGAAACAAGTAATCGA
AGACACGCGCTCA

protein sequence of NO23G01580.3

>NO23G01580.3-protein ID=NO23G01580.3-protein|Name=NO23G01580.3|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MAAVADAHPTRILGVALLPTGHLKEKEEGGTEGESEKGRDILMEAYTHAV
DVCGLDGVALFVGPLSAPLDHPGFEPLWKQCQEQGLPVWVHPNRPQFYPD
YEAYRGKGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYPDLKVVTHHH
GGMIPFFTDRFTTQSQNFDDTESLTLLQDMRKFYCDTATFGVAPLNIRQA
LEFFEPGRVLFGTDTPMDMAAPGSFIKASKTGVLKSEVSPEIIKKVWSEN
FWTMMQKRVESKGGIGGGKAGGGKKRKERADSEEASLSHP*

mRNA from alignment at chr23:581927..584658+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G01580.3 ID=NO23G01580.3|Name=NO23G01580.3|organism=Nannochloropsis oceanica|type=mRNA|length=2732bp|location=Sequence derived from alignment at chr23:581927..584658+ (Nannochloropsis oceanica)
AAAAACACATGCAGGGCTGCTGACACACCATGGCGACCTCCTCTCCCCCT
CCACCTTCAACTGCTCCGACTACCGGCGTCGTCGATGCCTACACGCATTA
TGCACCCTTAGCCCTCACGAGTTACCTCCAGGATGAATGCAATGACGGGA
AGCCCTTGGTATTTGCCAAGCTCTTTGATCGTAAGTAATTTCGGACGGGG
AGACGAGGAGGGGAGGGGATGGGAGGGAAAGGGGAGAGTGGTTGGAAAGG
ATGAGGAGATGTGTCGGGGCCATAGTTGTGGCGTTTCTTCCTGCCAGTTT
TTGGGTCATCCGTCGTGTCCTGTCCGATATTGGTATTTTTCTATCTCGCG
ATGTACCCTGTTATCCCCGTATTTCCTCCCTTTGATCCGTCCTTTTTTTG
CAGGTATCCCCCTTTTAACTGACATGGCTGCACGACTTGCCTTCATGGAC
GCCCACCACATCGATACCCACGTCCTCGTACCTCTCCCCTGGTTGGAAAT
CGTTCCTGGCTGCCATAGTAGTAAAGAGAAGTAAAAAGGGAGGGAGGGGT
AGAGAGGGAGGGAGAAGGGTTAGGGAGAGGAAAAGATGAAAGGCATCATG
AAATATAGGCGGTTGCCAACAACACACAGGCCTACTTAATCCTTCCCTCC
CCCTCGTTCCCTCCCTCCCTCCTTTCCAGGGCACTTGAGGCCTGCAAGCG
CGCCAACGTCGAAATGGCAGCCGTGGCCGACGCACATCCTACCCGGATTT
TGGGCGTTGCCCTCCTCCCCACCGGGCACCTCAAGGAGAAAGAAGAGGGA
GGGACGGAGGGAGAGAGCGAAAAAGGGAGGGACATTTTGATGGAAGCATA
CACGCACGCGGTAGACGTGTGTGGGTTGGACGGGGTGGCACTCTTTGTAG
TAAGTGGGCGCACCCCTCCCTCCTTCCCTCCTTCCTTCCCTCCCTCCCTC
CCTCACTCCCTCTTTCCCTCCCTCCCTCTTTCTCTCCTTCAATTCCCTCA
CATTCTCGCGCCTAACCGTTCTTCCCTCCCTCTCTTTCCCCATTCCTAGG
GCCCCCTCTCCGCCCCTCTCGACCACCCCGGCTTCGAGCCTCTGTGGAAG
CAGTGCCAAGAGCAGGGCCTGCCTGTCTGGGTCCACCCCAACCGACCGCA
GGTACTTACGGAGGGAGGGAGGGGGGGAGGCAGGGAGAGAATCGGATCGA
GTCCAGTCAAAGAAAGTGATTCTTATTTTCCTCTCATGTCTACTCCTCCC
TCCATCCCTCGCTCCCTCTCTCGCGGCCTCCCTCCCTTCCTAGTTCTATC
CCGACTACGAGGCCTACAGGGGCAAGGGTGGAAGCCTCCACCAAATATGG
AACACATTAGGTAAGGGAGAGAGGGAGGGAGAGAGGGAGGGAGGGACAGG
AGAATGGATCGGAGTAATGCTCCCATCTGCTCATGTCCCTCCCTCCCTCC
CTCTCTCCCTCCCTCCCTTCTCTCCTCCCCTCCAGGCTGGGTTTACGACA
CGAGCGTGGCGATGGTCCACATGGTCATGGCCGGCGTCTTCCAACGCTAC
CCGGATTTGAAGGTAGGAAGGGAAGGAGGGAGGGAAGGAGGGAGAGAGGG
AGGGGCTTCGAAAACACATTTGTCAGTATTGTTTCCCTCTCCCTCCCTCC
CTCCCTCCCTCCTTTAGGTCGTGACCCATCACCACGGGGGCATGAGTCAT
ATTTGTCATTACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCTAGGTCGTAACCCTCCACCACGGGGGCATGAGT
CATTTTTGTCACTACCATCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTACCCTCCCTCCTCAAGGTCGTGA
CCCACCACCACGGGGGCATGATTCCCTTCTTCACAGACCGCTTCACCACC
CAAAGCCAGAACTTCGACGACACAGAGAGCCTGACCCTGCTCCAGGACAT
GAGAAAATTCTACTGCGACACTGCCACCTTTGGCGTGGCCCCGCTCAACA
TTCGACAGGTGCCCCTCTATCCCTCCTTTCCTCTTTCCCTCCCTCCCCTC
CTCTCCTCTTCCTCCCTTCTTCCTCCTCCTACTATTTTAGAAAATCTTTT
TCATTTTTCTCCCACTCACCCTCCCTCCCTTCGCCCCTCCCTCCCTCCCT
CCCCCAGGCCCTCGAGTTTTTCGAGCCCGGTCGTGTCTTGTTCGGGACTG
ACACTCCTATGGACATGGCAGCCCCCGGGTCTTTCATCAAGGCGAGCAAG
ACGGGAGTGCTGAAGAGTGGTAAAAAGGGAGGGAGGGGGGGAGGGAGGGA
GGGAGGGAGGGGAAAGTGTGGAAAAATCACCAATAAGGTTCCTGTCTAAA
CGTCTCCACAACAAGGAGTCGAATCAAGGAAAAGCGGGAGGAAGGGAAGG
AAGGAAGGAAGGAAGCAAGGAAGGAGACGCATGCTTAACCAGCCCCAACT
ACTCGATACATCCAACAGAGGTCTCGCCCGAGATAATTAAAAAAGTTTGG
AGTGAAAACTTCTGGACCATGATGCAGAAACGCGTGGAAAGCAAAGGAGG
GATAGGGGGAGGGAAGGCAGGAGGGGGAAAGAAAAGAAAAGAAAGAGCTG
ATAGTGAGGAGGCAAGTTTGAGTCACCCATAAATCGGCTTGTGAAGGTGA
AAAAGAAACAAGTAATCGAAGACACGCGCTCA

Coding sequence (CDS) from alignment at chr23:581927..584658+

>NO23G01580.3 ID=NO23G01580.3|Name=NO23G01580.3|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr23:581927..584658+ (Nannochloropsis oceanica)
ATGGCAGCCGTGGCCGACGCACATCCTACCCGGATTTTGGGCGTTGCCCT
CCTCCCCACCGGGCACCTCAAGGAGAAAGAAGAGGGAGGGACGGAGGGAG
AGAGCGAAAAAGGGAGGGACATTTTGATGGAAGCATACACGCACGCGGTA
GACGTGTGTGGGTTGGACGGGGTGGCACTCTTTGTAGGCCCCCTCTCCGC
CCCTCTCGACCACCCCGGCTTCGAGCCTCTGTGGAAGCAGTGCCAAGAGC
AGGGCCTGCCTGTCTGGGTCCACCCCAACCGACCGCAGTTCTATCCCGAC
TACGAGGCCTACAGGGGCAAGGGTGGAAGCCTCCACCAAATATGGAACAC
ATTAGGCTGGGTTTACGACACGAGCGTGGCGATGGTCCACATGGTCATGG
CCGGCGTCTTCCAACGCTACCCGGATTTGAAGGTCGTGACCCACCACCAC
GGGGGCATGATTCCCTTCTTCACAGACCGCTTCACCACCCAAAGCCAGAA
CTTCGACGACACAGAGAGCCTGACCCTGCTCCAGGACATGAGAAAATTCT
ACTGCGACACTGCCACCTTTGGCGTGGCCCCGCTCAACATTCGACAGGCC
CTCGAGTTTTTCGAGCCCGGTCGTGTCTTGTTCGGGACTGACACTCCTAT
GGACATGGCAGCCCCCGGGTCTTTCATCAAGGCGAGCAAGACGGGAGTGC
TGAAGAGTGAGGTCTCGCCCGAGATAATTAAAAAAGTTTGGAGTGAAAAC
TTCTGGACCATGATGCAGAAACGCGTGGAAAGCAAAGGAGGGATAGGGGG
AGGGAAGGCAGGAGGGGGAAAGAAAAGAAAAGAAAGAGCTGATAGTGAGG
AGGCAAGTTTGAGTCACCCATAA

Synonyms

Publications