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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr23 | genome | chr23:571815..574410 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G01550.2 vs.
Match: EWM27834.1 (n-alpha-acetyltransferase catalytic subunit [Nannochloropsis gaditana]) HSP 1 Score: 179.5 bits (454), Expect = 1.600e-41 Identity = 97/159 (61.01%), Postives = 115/159 (72.33%), Query Frame = 0
Query: 34 SVGIAAPFLKYDRKGLDVTIEFKSKLSKEEVTWAFDAVKETMEETYDNSGYGWDDEDKLAQLTEPEARFLVIREALFTEEKDENTAQQEHEGENKGKVL---ENEKETPSHSTGKKKTYSGRDKKGKKKGALVGIVHFRFSVQGDFVDKMAGAPSLILW 190
SVGIAAPF KYDRKG+D IEFK+KL+KEEVTWAFD +K++MEE YD SGYGWDDEDKLAQLTEPEARFLVIRE+ + E T + V E+ K+ ++G + R K +KKG ++G+VHFRFSVQGDF DKMAGAPSLILW
Sbjct: 61 SVGIAAPFFKYDRKGVDANIEFKTKLNKEEVTWAFDNIKDSMEEIYDASGYGWDDEDKLAQLTEPEARFLVIRES-----RPEGTVTSPRFALKERNVYDQDEDGKKGEKQASGGDMKQTTRMKMARKKGQILGVVHFRFSVQGDFTDKMAGAPSLILW 214
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G01550.2 ID=NO23G01550.2|Name=NO23G01550.2|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp CAGGCTGTACGATATTTGCCGTCTTGGCGCCCAATCTGCCTTTACAAATT ACGCGACGACCTTTTGCATACCAAAGACCTTCCCAGCACTCCCACAATTT GTACAATACAGCCAACCAAGCACACACTTAAGGCATCGAGCACCATGAGC ATGAAGGGCAAAGGCGGCAAAGGGGGTAAGGCCAAGGGTGGGGGCAAGAG CACGGCAGGCGGCCAGACTATTGAGATCAAGCGGAGCAAGGACCGCCTGA CGGCCTCCATCAACGAGTCCATCCTCACCCTCCGCCAAGCCCTCTTTGAT GACCTGGGACAAAACAAGGATGTGGTACGTGCATGCTCCATCTCGCTTCC TGCCCGCCTGCTCTCACAAACGTAAACAGTGTGTCACTCTCCCCTCTCTC CTTCCTTCCCTTGCCTTCTCCCGTCTTCCAGTCCGTGGGGATCGCTGCCC CCTTCCTCAAATACGACCGGAAGGGCTTGGACGTCACCATCGAGTTCAAG AGCAAGCTTAGCAAGGAGGAAGTGACCTGGGCTTTTGATGCCGTGAAGGA GACGATGGAAGAGACTTACGACAACTCGGGCTACGGATGGGACGATGAAG ACAAGCTTGCACAGCTCACTGAGCCGGAGGCACGTTTCCTCGTCATCCGG GAGGCTCTCTTCACCGAAGAGAAGGACGAGAACACTGCCCAGCAGGAGCA CGAGGGCGAGAACAAGGGAAAGGTGCTGGAAAATGAAAAGGAGACGCCGA GCCATAGTACGGGCAAGAAGAAGACATACAGCGGCAGGGACAAGAAGGGC AAGAAAAAGGGCGCCTTGGTAGGCATCGTCCACTTCCGGTTCTCGGTCCA GGGAGATTTCGTGGACAAGATGGCCGGCGCCCCGTCCCTGATTCTTTGGG ATATCGCCATTTTGGCTGACGCACGTCGCAAGGGGTTGGGAAAGCATTGC CTCCTCCTTTTGGAGCTCATTGCGCGAAAACAGGCCATGCATGCCATTTG CGTGCCGGTCCAACTGTCCGATCAAGCCACCCTGGCCTGGGTGACCAAGG GAGGGAAGGGATACGTGGCTATGGAGGACGAAGTCAAGGAGAGCTTGGAT TTTGAGGCGGAGGAGGAAGGATTTGAGGTATATATCAAGACGCTCCTGGC CCCGCCTCCCCTCGCTGCTGTTGCCCCGACTCTTGCGCCTGCAGTGCCGG TTGTGGCCAAGAATGAAGGGGAGGAGAAGGGGAAGAAAGAGCAGATGGAA AAGGATAACTAATGAAAGGCAAAAGAGGAAGGGGGATGGAGGCGGTTACC AAAAAGATGAAAAGAGTATAAAAAGTTAGAGAAATTAAAAAAAGCTGGGG ATAAAAGTAGAAAAATTGAAAAGTAAAACTAATAAACAATTGATCAGCCC back to topprotein sequence of NO23G01550.2 >NO23G01550.2-protein ID=NO23G01550.2-protein|Name=NO23G01550.2|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp MLHLASCPPALTNVNSVSLSPLSFLPLPSPVFQSVGIAAPFLKYDRKGLD VTIEFKSKLSKEEVTWAFDAVKETMEETYDNSGYGWDDEDKLAQLTEPEA RFLVIREALFTEEKDENTAQQEHEGENKGKVLENEKETPSHSTGKKKTYS GRDKKGKKKGALVGIVHFRFSVQGDFVDKMAGAPSLILWDIAILADARRK GLGKHCLLLLELIARKQAMHAICVPVQLSDQATLAWVTKGGKGYVAMEDE VKESLDFEAEEEGFEVYIKTLLAPPPLAAVAPTLAPAVPVVAKNEGEEKG KKEQMEKDN* back to topmRNA from alignment at chr23:571815..574410- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G01550.2 ID=NO23G01550.2|Name=NO23G01550.2|organism=Nannochloropsis oceanica|type=mRNA|length=2596bp|location=Sequence derived from alignment at chr23:571815..574410- (Nannochloropsis oceanica) CAGGCTGTACGATATTTGCCGTCTTGGCGCCCAATCTGCCTTTACAAATT
ACGCGACGACCTTTTGCATACCAAAGACCTTCCCAGCACTCCCACAATTT
GTACAATACAGCCAACCAAGCACACACTTAAGGCATCGAGCACCATGAGC
ATGAAGGGTAAGCCCACTCTCCCTGCCATTTCCCCGCTTTTTCCCTCCCT
TATTTTTACCCTCCCGAATTTCCACCCCCTACTTACTGTGAAGGCAAAGG
CGGCAAAGGGGGTAAGGCCAAGGGTGGGGGCAAGAGCACGGCAGGCGGCC
AGACTATTGAGATCAAGCGGAGCAAGGACCGCCTGACGGTACGTATATAC
AAATTTGGGGGGGGGGGAATGGAAATGGGGCGGCCATCGGGGAGAGGCGG
ATGTTTAGAGTGAAAATAGAACGCAGATCAAGGGCAACTGGTCTCTTGGC
TGGCAGTTAAATAGCGTTTGCACCAGCCAATCTTCGTCCGATCAGGTTCG
GGTAGATTCCTCGATTCCTCACTCTCCCTTCCGCAAAATCTGACCTCTCT
TTCGTCCATCTCCTTGCTTCTCTTCCTCCCCAGGCCTCCATCAACGAGTC
CATCCTCACCCTCCGCCAAGCCCTCTTTGATGACCTGGGACAAAACAAGG
ATGTGGTACGTGCATGCTCCATCTCGCTTCCTGCCCGCCTGCTCTCACAA
ACGTAAACAGTGTGTCACTCTCCCCTCTCTCCTTCCTTCCCTTGCCTTCT
CCCGTCTTCCAGTCCGTGGGGATCGCTGCCCCCTTCCTCAAATACGACCG
GAAGGGCTTGGACGTCACCATCGAGTTCAAGAGCAAGCTTAGCAAGGAGG
AAGGTGAGAAGGGAGGGATGGAGGGTAGAGGAGGGGGGGGCAATGAAGAA
TTTTTCTTCCGAGAATGACTGCGTTCATCCCGCCTTCCACTCCCTCCCTC
CCTTTCTCCCTCCCTCCCTAGTGACCTGGGCTTTTGATGCCGTGAAGGAG
ACGATGGAAGAGACTTACGACAACTCGGGCTACGGATGGGACGATGAAGA
CAAGCTTGCACAGCTCACTGAGCCGGAGGCACGGTGGGTTCCCTTCCTCC
TTCCTTTCCTTCCTCCCTCTTTGAGAGAAGCAGACCGGAAGCATGTCGTG
CAGTCCCTAATGTCCCTCTCTTTTTCTCCTTCCCCTCTGTCTTTCCTCCC
TCCACTCAGTTTCCTCGTCATCCGGGAGGCTCTCTTCACCGAAGAGAAGG
ACGAGAACACTGCCCAGCAGGAGCACGAGGGCGAGAACAAGGGAAAGGTG
CTGGAAAATGAAAAGGAGACGCCGAGCCATAGTACGGGCAAGAAGAAGAC
ATACAGCGGCAGGGACAAGAAGGGCAAGAAAAAGGGCGCCTTGGTAGGCA
TCGTCCACTTCCGGTGCGTATTTGAATGGCCCCGCCCGCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCACCTGTACACCTCTCCATCCCTTATTTTTTCC
ACCTCACTTCCCTTTCAACCTTTATCTCTTCTTCCATGCTTTTTCCAAGC
AACACATCTAAACGATCTCCTTCTCTCCTTCCCTTTTTCCCCACCTCATC
CTTTTTCTTCTTTCCCCCTGCCTCCTTAGGTTCTCGGTCCAGGGAGATTT
CGTGGACAAGATGGCCGGCGCCCCGTCCCTGATTCTTTGGGTAAGCAGGG
AGGGAGGGTTAGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGAGA
GGCTGGATCTGACCTGACGCCGGCGAAATGAGTGATTTCAAACGTGCTTC
GTGATCTTACACCACCTCCCTTCCTTGGGCTCTCTTTTCTCTCTCCTTCT
CTTCCTTTCTTTGTCCACACAGGATATCGCCATTTTGGCTGACGCACGTC
GCAAGGGGTTGGGAAAGCATTGCCTCCTCCTTTTGGAGCTCATTGCGCGA
AAACAGGCCATGCATGCCATTTGCGTGCCGGTAAGGAGGAAGGGAGGGAA
GGACGAGGGAAAAGGGAGAAGGAAGGAAAGGAAGGAGGAAGAGAGTGGCA
GAGATAGGAAAGGGGTGAAAAGGCTTCCTATAGGAAGCAAAGGGGGGACC
GAAAGCTGGCCATAGGTATATATCTAACCTCTCCCTCCATTCTTTCCACC
CTTCCCTCCCCTCCCCTCCTTCCCCTTCCTTCTTCCTCTTCTTTTCTCTC
CAGGTCCAACTGTCCGATCAAGCCACCCTGGCCTGGGTGACCAAGGGAGG
GAAGGGATACGTGGCTATGGAGGACGAAGTCAAGGAGAGCTTGGATTTTG
AGGCGGAGGAGGAAGGATTTGAGGTATATATCAAGACGCTCCTGGCCCCG
CCTCCCCTCGCTGCTGTTGCCCCGACTCTTGCGCCTGCAGTGCCGGTTGT
GGCCAAGAATGAAGGGGAGGAGAAGGGGAAGAAAGAGCAGATGGAAAAGG
ATAACTAATGAAAGGCAAAAGAGGAAGGGGGATGGAGGCGGTTACCAAAA
AGATGAAAAGAGTATAAAAAGTTAGAGAAATTAAAAAAAGCTGGGGATAA
AAGTAGAAAAATTGAAAAGTAAAACTAATAAACAATTGATCAGCCC back to topCoding sequence (CDS) from alignment at chr23:571815..574410- >NO23G01550.2 ID=NO23G01550.2|Name=NO23G01550.2|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr23:571815..574410- (Nannochloropsis oceanica) ATGCTCCATCTCGCTTCCTGCCCGCCTGCTCTCACAAACGTAAACAGTGT GTCACTCTCCCCTCTCTCCTTCCTTCCCTTGCCTTCTCCCGTCTTCCAGT CCGTGGGGATCGCTGCCCCCTTCCTCAAATACGACCGGAAGGGCTTGGAC GTCACCATCGAGTTCAAGAGCAAGCTTAGCAAGGAGGAAGTGACCTGGGC TTTTGATGCCGTGAAGGAGACGATGGAAGAGACTTACGACAACTCGGGCT ACGGATGGGACGATGAAGACAAGCTTGCACAGCTCACTGAGCCGGAGGCA CGTTTCCTCGTCATCCGGGAGGCTCTCTTCACCGAAGAGAAGGACGAGAA CACTGCCCAGCAGGAGCACGAGGGCGAGAACAAGGGAAAGGTGCTGGAAA ATGAAAAGGAGACGCCGAGCCATAGTACGGGCAAGAAGAAGACATACAGC GGCAGGGACAAGAAGGGCAAGAAAAAGGGCGCCTTGGTAGGCATCGTCCA CTTCCGGTTCTCGGTCCAGGGAGATTTCGTGGACAAGATGGCCGGCGCCC CGTCCCTGATTCTTTGGGATATCGCCATTTTGGCTGACGCACGTCGCAAG GGGTTGGGAAAGCATTGCCTCCTCCTTTTGGAGCTCATTGCGCGAAAACA GGCCATGCATGCCATTTGCGTGCCGGTCCAACTGTCCGATCAAGCCACCC TGGCCTGGGTGACCAAGGGAGGGAAGGGATACGTGGCTATGGAGGACGAA GTCAAGGAGAGCTTGGATTTTGAGGCGGAGGAGGAAGGATTTGAGGTATA TATCAAGACGCTCCTGGCCCCGCCTCCCCTCGCTGCTGTTGCCCCGACTC TTGCGCCTGCAGTGCCGGTTGTGGCCAAGAATGAAGGGGAGGAGAAGGGG AAGAAAGAGCAGATGGAAAAGGATAACTAA back to top
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