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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr23 | genome | chr23:571815..574410 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G01550.1 vs.
Match: EWM27834.1 (n-alpha-acetyltransferase catalytic subunit [Nannochloropsis gaditana]) HSP 1 Score: 274.6 bits (701), Expect = 4.000e-70 Identity = 150/219 (68.49%), Postives = 173/219 (79.00%), Query Frame = 0
Query: 1 MSMKGKGGKGGKAKGGGKSTAGGQTIEIKRSKDRLTASINESILTLRQALFDDLGQNKDVSVGIAAPFLKYDRKGLDVTIEFKSKLSKEEVTWAFDAVKETMEETYDNSGYGWDDEDKLAQLTEPEARFLVIREALFTEEKDENTAQQEHEGENKGKVL---ENEKETPSHSTGKKKTYSGRDKKGKKKGALVGIVHFRFSVQGDFVDKMAGAPSLILW 217
MSMKGKGGKGGKAKGGGKS +GG TI+IKRSKDR+TASINES+LTLRQALF+DLGQNKDVSVGIAAPF KYDRKG+D IEFK+KL+KEEVTWAFD +K++MEE YD SGYGWDDEDKLAQLTEPEARFLVIRE+ + E T + V E+ K+ ++G + R K +KKG ++G+VHFRFSVQGDF DKMAGAPSLILW
Sbjct: 1 MSMKGKGGKGGKAKGGGKSCSGGGTIDIKRSKDRVTASINESLLTLRQALFNDLGQNKDVSVGIAAPFFKYDRKGVDANIEFKTKLNKEEVTWAFDNIKDSMEEIYDASGYGWDDEDKLAQLTEPEARFLVIRES-----RPEGTVTSPRFALKERNVYDQDEDGKKGEKQASGGDMKQTTRMKMARKKGQILGVVHFRFSVQGDFTDKMAGAPSLILW 214
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G01550.1 ID=NO23G01550.1|Name=NO23G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
CAGGCTGTACGATATTTGCCGTCTTGGCGCCCAATCTGCCTTTACAAATT
ACGCGACGACCTTTTGCATACCAAAGACCTTCCCAGCACTCCCACAATTT
GTACAATACAGCCAACCAAGCACACACTTAAGGCATCGAGCACCATGAGC
ATGAAGGGCAAAGGCGGCAAAGGGGGTAAGGCCAAGGGTGGGGGCAAGAG
CACGGCAGGCGGCCAGACTATTGAGATCAAGCGGAGCAAGGACCGCCTGA
CGGCCTCCATCAACGAGTCCATCCTCACCCTCCGCCAAGCCCTCTTTGAT
GACCTGGGACAAAACAAGGATGTGTCCGTGGGGATCGCTGCCCCCTTCCT
CAAATACGACCGGAAGGGCTTGGACGTCACCATCGAGTTCAAGAGCAAGC
TTAGCAAGGAGGAAGTGACCTGGGCTTTTGATGCCGTGAAGGAGACGATG
GAAGAGACTTACGACAACTCGGGCTACGGATGGGACGATGAAGACAAGCT
TGCACAGCTCACTGAGCCGGAGGCACGTTTCCTCGTCATCCGGGAGGCTC
TCTTCACCGAAGAGAAGGACGAGAACACTGCCCAGCAGGAGCACGAGGGC
GAGAACAAGGGAAAGGTGCTGGAAAATGAAAAGGAGACGCCGAGCCATAG
TACGGGCAAGAAGAAGACATACAGCGGCAGGGACAAGAAGGGCAAGAAAA
AGGGCGCCTTGGTAGGCATCGTCCACTTCCGGTTCTCGGTCCAGGGAGAT
TTCGTGGACAAGATGGCCGGCGCCCCGTCCCTGATTCTTTGGGATATCGC
CATTTTGGCTGACGCACGTCGCAAGGGGTTGGGAAAGCATTGCCTCCTCC
TTTTGGAGCTCATTGCGCGAAAACAGGCCATGCATGCCATTTGCGTGCCG
GTCCAACTGTCCGATCAAGCCACCCTGGCCTGGGTGACCAAGGGAGGGAA
GGGATACGTGGCTATGGAGGACGAAGTCAAGGAGAGCTTGGATTTTGAGG
CGGAGGAGGAAGGATTTGAGGTATATATCAAGACGCTCCTGGCCCCGCCT
CCCCTCGCTGCTGTTGCCCCGACTCTTGCGCCTGCAGTGCCGGTTGTGGC
CAAGAATGAAGGGGAGGAGAAGGGGAAGAAAGAGCAGATGGAAAAGGATA
ACTAATGAAAGGCAAAAGAGGAAGGGGGATGGAGGCGGTTACCAAAAAGA
TGAAAAGAGTATAAAAAGTTAGAGAAATTAAAAAAAGCTGGGGATAAAAG
TAGAAAAATTGAAAAGTAAAACTAATAAACAATTGATCAGCCC back to topprotein sequence of NO23G01550.1 >NO23G01550.1-protein ID=NO23G01550.1-protein|Name=NO23G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MSMKGKGGKGGKAKGGGKSTAGGQTIEIKRSKDRLTASINESILTLRQAL
FDDLGQNKDVSVGIAAPFLKYDRKGLDVTIEFKSKLSKEEVTWAFDAVKE
TMEETYDNSGYGWDDEDKLAQLTEPEARFLVIREALFTEEKDENTAQQEH
EGENKGKVLENEKETPSHSTGKKKTYSGRDKKGKKKGALVGIVHFRFSVQ
GDFVDKMAGAPSLILWDIAILADARRKGLGKHCLLLLELIARKQAMHAIC
VPVQLSDQATLAWVTKGGKGYVAMEDEVKESLDFEAEEEGFEVYIKTLLA
PPPLAAVAPTLAPAVPVVAKNEGEEKGKKEQMEKDN* back to topmRNA from alignment at chr23:571815..574410- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G01550.1 ID=NO23G01550.1|Name=NO23G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2596bp|location=Sequence derived from alignment at chr23:571815..574410- (Nannochloropsis oceanica)
CAGGCTGTACGATATTTGCCGTCTTGGCGCCCAATCTGCCTTTACAAATT
ACGCGACGACCTTTTGCATACCAAAGACCTTCCCAGCACTCCCACAATTT
GTACAATACAGCCAACCAAGCACACACTTAAGGCATCGAGCACCATGAGC
ATGAAGGGTAAGCCCACTCTCCCTGCCATTTCCCCGCTTTTTCCCTCCCT
TATTTTTACCCTCCCGAATTTCCACCCCCTACTTACTGTGAAGGCAAAGG
CGGCAAAGGGGGTAAGGCCAAGGGTGGGGGCAAGAGCACGGCAGGCGGCC
AGACTATTGAGATCAAGCGGAGCAAGGACCGCCTGACGGTACGTATATAC
AAATTTGGGGGGGGGGGAATGGAAATGGGGCGGCCATCGGGGAGAGGCGG
ATGTTTAGAGTGAAAATAGAACGCAGATCAAGGGCAACTGGTCTCTTGGC
TGGCAGTTAAATAGCGTTTGCACCAGCCAATCTTCGTCCGATCAGGTTCG
GGTAGATTCCTCGATTCCTCACTCTCCCTTCCGCAAAATCTGACCTCTCT
TTCGTCCATCTCCTTGCTTCTCTTCCTCCCCAGGCCTCCATCAACGAGTC
CATCCTCACCCTCCGCCAAGCCCTCTTTGATGACCTGGGACAAAACAAGG
ATGTGGTACGTGCATGCTCCATCTCGCTTCCTGCCCGCCTGCTCTCACAA
ACGTAAACAGTGTGTCACTCTCCCCTCTCTCCTTCCTTCCCTTGCCTTCT
CCCGTCTTCCAGTCCGTGGGGATCGCTGCCCCCTTCCTCAAATACGACCG
GAAGGGCTTGGACGTCACCATCGAGTTCAAGAGCAAGCTTAGCAAGGAGG
AAGGTGAGAAGGGAGGGATGGAGGGTAGAGGAGGGGGGGGCAATGAAGAA
TTTTTCTTCCGAGAATGACTGCGTTCATCCCGCCTTCCACTCCCTCCCTC
CCTTTCTCCCTCCCTCCCTAGTGACCTGGGCTTTTGATGCCGTGAAGGAG
ACGATGGAAGAGACTTACGACAACTCGGGCTACGGATGGGACGATGAAGA
CAAGCTTGCACAGCTCACTGAGCCGGAGGCACGGTGGGTTCCCTTCCTCC
TTCCTTTCCTTCCTCCCTCTTTGAGAGAAGCAGACCGGAAGCATGTCGTG
CAGTCCCTAATGTCCCTCTCTTTTTCTCCTTCCCCTCTGTCTTTCCTCCC
TCCACTCAGTTTCCTCGTCATCCGGGAGGCTCTCTTCACCGAAGAGAAGG
ACGAGAACACTGCCCAGCAGGAGCACGAGGGCGAGAACAAGGGAAAGGTG
CTGGAAAATGAAAAGGAGACGCCGAGCCATAGTACGGGCAAGAAGAAGAC
ATACAGCGGCAGGGACAAGAAGGGCAAGAAAAAGGGCGCCTTGGTAGGCA
TCGTCCACTTCCGGTGCGTATTTGAATGGCCCCGCCCGCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCACCTGTACACCTCTCCATCCCTTATTTTTTCC
ACCTCACTTCCCTTTCAACCTTTATCTCTTCTTCCATGCTTTTTCCAAGC
AACACATCTAAACGATCTCCTTCTCTCCTTCCCTTTTTCCCCACCTCATC
CTTTTTCTTCTTTCCCCCTGCCTCCTTAGGTTCTCGGTCCAGGGAGATTT
CGTGGACAAGATGGCCGGCGCCCCGTCCCTGATTCTTTGGGTAAGCAGGG
AGGGAGGGTTAGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGAGA
GGCTGGATCTGACCTGACGCCGGCGAAATGAGTGATTTCAAACGTGCTTC
GTGATCTTACACCACCTCCCTTCCTTGGGCTCTCTTTTCTCTCTCCTTCT
CTTCCTTTCTTTGTCCACACAGGATATCGCCATTTTGGCTGACGCACGTC
GCAAGGGGTTGGGAAAGCATTGCCTCCTCCTTTTGGAGCTCATTGCGCGA
AAACAGGCCATGCATGCCATTTGCGTGCCGGTAAGGAGGAAGGGAGGGAA
GGACGAGGGAAAAGGGAGAAGGAAGGAAAGGAAGGAGGAAGAGAGTGGCA
GAGATAGGAAAGGGGTGAAAAGGCTTCCTATAGGAAGCAAAGGGGGGACC
GAAAGCTGGCCATAGGTATATATCTAACCTCTCCCTCCATTCTTTCCACC
CTTCCCTCCCCTCCCCTCCTTCCCCTTCCTTCTTCCTCTTCTTTTCTCTC
CAGGTCCAACTGTCCGATCAAGCCACCCTGGCCTGGGTGACCAAGGGAGG
GAAGGGATACGTGGCTATGGAGGACGAAGTCAAGGAGAGCTTGGATTTTG
AGGCGGAGGAGGAAGGATTTGAGGTATATATCAAGACGCTCCTGGCCCCG
CCTCCCCTCGCTGCTGTTGCCCCGACTCTTGCGCCTGCAGTGCCGGTTGT
GGCCAAGAATGAAGGGGAGGAGAAGGGGAAGAAAGAGCAGATGGAAAAGG
ATAACTAATGAAAGGCAAAAGAGGAAGGGGGATGGAGGCGGTTACCAAAA
AGATGAAAAGAGTATAAAAAGTTAGAGAAATTAAAAAAAGCTGGGGATAA
AAGTAGAAAAATTGAAAAGTAAAACTAATAAACAATTGATCAGCCC back to topCoding sequence (CDS) from alignment at chr23:571815..574410- >NO23G01550.1 ID=NO23G01550.1|Name=NO23G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr23:571815..574410- (Nannochloropsis oceanica)
ATGAGCATGAAGGGCAAAGGCGGCAAAGGGGGTAAGGCCAAGGGTGGGGG
CAAGAGCACGGCAGGCGGCCAGACTATTGAGATCAAGCGGAGCAAGGACC
GCCTGACGGCCTCCATCAACGAGTCCATCCTCACCCTCCGCCAAGCCCTC
TTTGATGACCTGGGACAAAACAAGGATGTGTCCGTGGGGATCGCTGCCCC
CTTCCTCAAATACGACCGGAAGGGCTTGGACGTCACCATCGAGTTCAAGA
GCAAGCTTAGCAAGGAGGAAGTGACCTGGGCTTTTGATGCCGTGAAGGAG
ACGATGGAAGAGACTTACGACAACTCGGGCTACGGATGGGACGATGAAGA
CAAGCTTGCACAGCTCACTGAGCCGGAGGCACGTTTCCTCGTCATCCGGG
AGGCTCTCTTCACCGAAGAGAAGGACGAGAACACTGCCCAGCAGGAGCAC
GAGGGCGAGAACAAGGGAAAGGTGCTGGAAAATGAAAAGGAGACGCCGAG
CCATAGTACGGGCAAGAAGAAGACATACAGCGGCAGGGACAAGAAGGGCA
AGAAAAAGGGCGCCTTGGTAGGCATCGTCCACTTCCGGTTCTCGGTCCAG
GGAGATTTCGTGGACAAGATGGCCGGCGCCCCGTCCCTGATTCTTTGGGA
TATCGCCATTTTGGCTGACGCACGTCGCAAGGGGTTGGGAAAGCATTGCC
TCCTCCTTTTGGAGCTCATTGCGCGAAAACAGGCCATGCATGCCATTTGC
GTGCCGGTCCAACTGTCCGATCAAGCCACCCTGGCCTGGGTGACCAAGGG
AGGGAAGGGATACGTGGCTATGGAGGACGAAGTCAAGGAGAGCTTGGATT
TTGAGGCGGAGGAGGAAGGATTTGAGGTATATATCAAGACGCTCCTGGCC
CCGCCTCCCCTCGCTGCTGTTGCCCCGACTCTTGCGCCTGCAGTGCCGGT
TGTGGCCAAGAATGAAGGGGAGGAGAAGGGGAAGAAAGAGCAGATGGAAA
AGGATAACTAA back to top
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