NO23G01080.1, NO23G01080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01080.1
Unique NameNO23G01080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length396
Alignment locationchr23:400422..401075 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:400422..401075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01080.1 vs.
Match: EWM22934.1 (protein of unknown function DUF4168 [Nannochloropsis gaditana])

HSP 1 Score: 115.2 bits (287), Expect = 1.600e-22
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = 0 
Query:    5 PTSAVGLARGIALQACRQTSTALKRSLPSSSSSSASSPPHFSGHHKSFLQLQQPQ-RGFATETTQATPVPPPPPSGRNRVYPAVLLITFASVGYVIMTPDDENIDTKIMEAVKARLPPKVDGEE 128
            P+S  G+A+G+A+   R  S A+K +L +SS S           H+    L Q Q R  ATETT ATPVPPPPPS RNRVYPAVLL+TFA+V YVIMTPDDE+ID+KI++AV+ARLP +V  EE
Sbjct:  377 PSSIAGMAKGVAVNGKRGVS-AIKPTLQTSSPSLVQR------QHRRIRPLWQHQLRQLATETTHATPVPPPPPSHRNRVYPAVLLVTFAAVVYVIMTPDDEDIDSKILQAVQARLPAEVPPEE 493
The following BLAST results are available for this feature:
BLAST of NO23G01080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22934.11.600e-2256.45protein of unknown function DUF4168 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01080NO23G01080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01080.1NO23G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01080.1.cds1NO23G01080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01080.1.cds2NO23G01080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01080.1 ID=NO23G01080.1|Name=NO23G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=396bp
ATGCCACTATCTCCAACCTCCGCCGTTGGCCTCGCCCGTGGCATTGCACT
CCAGGCCTGCCGCCAGACCAGTACAGCTCTGAAGCGATCTCTACCCTCTT
CTTCCTCCTCCTCTGCATCGTCTCCCCCACACTTTTCCGGCCACCACAAG
TCTTTTCTCCAGCTACAGCAGCCGCAGCGGGGCTTTGCCACTGAAACAAC
CCAAGCTACGCCCGTCCCTCCCCCTCCTCCTTCAGGGCGCAATCGAGTGT
ATCCTGCAGTCCTTTTGATAACATTTGCATCAGTGGGATATGTGATCATG
ACGCCGGACGATGAGAACATTGACACCAAAATAATGGAGGCCGTGAAAGC
CCGTCTTCCTCCTAAAGTAGACGGAGAAGAGGGCCAAGCAACATAA
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protein sequence of NO23G01080.1

>NO23G01080.1-protein ID=NO23G01080.1-protein|Name=NO23G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MPLSPTSAVGLARGIALQACRQTSTALKRSLPSSSSSSASSPPHFSGHHK
SFLQLQQPQRGFATETTQATPVPPPPPSGRNRVYPAVLLITFASVGYVIM
TPDDENIDTKIMEAVKARLPPKVDGEEGQAT*
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mRNA from alignment at chr23:400422..401075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01080.1 ID=NO23G01080.1|Name=NO23G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=654bp|location=Sequence derived from alignment at chr23:400422..401075- (Nannochloropsis oceanica)
ATGCCACTATCTCCAACCTCCGCCGTTGGCCTCGCCCGTGGCATTGCACT
CCAGGCCTGCCGCCAGACCAGTACAGCTCTGAAGCGATCTCTACCCTCTT
CTTCCTCCTCCTCTGCATCGTCTCCCCCACACTTTTCCGGCCACCACAAG
TCTTTTCTCCAGCTACAGCAGCCGCAGCGGGGCTTTGCCACTGAAACAAC
CCAAGCTACGCCCGTCCCTCCCCCTCCTCCTTCAGGGCGCAATCGAGTGT
ATCCTGCAGTCCTTTTGATAACATTTGCATCAGTGGGATATGTGATCATG
ACGTGAGTCGAGTAGGCGGTGAGGGAGGGAGACAAGGAGTGGGGCAGGGG
GGGGGAGGTTGAATGCGTGTAGGGTGTCGAGGGAATCAAGTCTTTGTTTG
TCGATTTTCTTCTCCTCTTTCTTTCGATGCTTGCATATCTAAGTCCCCCT
ACTTGGTTGCATGCCCCTCAGCTCTGTGGTGGCCCTCCATGTTTCCCCAT
TCCCCAATGCACACAACCCTCCTTCCCCGCATGTTCTCTTTCTTTCACTC
CCTTCCGCAGGCCGGACGATGAGAACATTGACACCAAAATAATGGAGGCC
GTGAAAGCCCGTCTTCCTCCTAAAGTAGACGGAGAAGAGGGCCAAGCAAC
ATAA
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Coding sequence (CDS) from alignment at chr23:400422..401075-

>NO23G01080.1 ID=NO23G01080.1|Name=NO23G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at chr23:400422..401075- (Nannochloropsis oceanica)
ATGCCACTATCTCCAACCTCCGCCGTTGGCCTCGCCCGTGGCATTGCACT
CCAGGCCTGCCGCCAGACCAGTACAGCTCTGAAGCGATCTCTACCCTCTT
CTTCCTCCTCCTCTGCATCGTCTCCCCCACACTTTTCCGGCCACCACAAG
TCTTTTCTCCAGCTACAGCAGCCGCAGCGGGGCTTTGCCACTGAAACAAC
CCAAGCTACGCCCGTCCCTCCCCCTCCTCCTTCAGGGCGCAATCGAGTGT
ATCCTGCAGTCCTTTTGATAACATTTGCATCAGTGGGATATGTGATCATG
ACGCCGGACGATGAGAACATTGACACCAAAATAATGGAGGCCGTGAAAGC
CCGTCTTCCTCCTAAAGTAGACGGAGAAGAGGGCCAAGCAACATAA
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Synonyms
Publications