NO23G00350.2, NO23G00350.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00350.2
Unique NameNO23G00350.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3531
Alignment locationchr23:162046..165882 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:162046..165882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00350.2 vs.
Match: EWM22995.1 (hypoxanthine-guanine phosphoribosyltransferase, partial [Nannochloropsis gaditana])

HSP 1 Score: 168.3 bits (425), Expect = 3.700e-38
Identity = 116/217 (53.46%), Postives = 140/217 (64.52%), Query Frame = 0 
Query:   31 TPLAAAF-LHRHYQTTASTCSSRSSSGSSSSSRSSSTRTTSPSAPPKSLSSTSVTPFFAGSSTSTSSSWSPPIFIPDAQTLYPLSAFALPQYLLDSGELEGVLLPAGMIQDRIDKIAEDLLLNLKMSHSSRSSDLY---EVHLLCVLKGAGRFYHFLFDSLRRQAQASRTPLLIKMEYIKVRSYSGMQSTGMVDVSGCKLDELKDKNVVIVEDIIDT 244
            T LA+AF LH    T    C S  SS +S            P   P  L  +S +     SS    S +SPPI IPDAQ LYPLSAFALP + L +GELE VLLP+G+I+DRIDK+A+DLL +L  +       L    E+HLLCVLKGA RF+H L  SLRR+AQA R PL I++E+I VRSYSGMQSTG VDVSGC L  L+ +NVV+VED+IDT
Sbjct:   33 TCLASAFYLHPTLPTAFIRCPSIPSSNTSPR----------PKCFPFVLCFSSTS-----SSPPPPSVFSPPIVIPDAQPLYPLSAFALPHHFLAAGELEAVLLPSGLIEDRIDKMAQDLLDDLFPAPFPPPGGLLPVCELHLLCVLKGASRFFHALLASLRRRAQAQRLPLQIQIEFITVRSYSGMQSTGTVDVSGCVLGNLQGRNVVLVEDMIDT 234
The following BLAST results are available for this feature:
BLAST of NO23G00350.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22995.13.700e-3853.46hypoxanthine-guanine phosphoribosyltransferase, pa... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00350NO23G00350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00350.2NO23G00350.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00350.2.cds1NO23G00350.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00350.2.cds2NO23G00350.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00350.2.cds3NO23G00350.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00350.2 ID=NO23G00350.2|Name=NO23G00350.2|organism=Nannochloropsis oceanica|type=mRNA|length=3531bp
GTGTGTTTTGTTTGTTTTAAATTCTAGTCGCCGATATGACAGCCGTCTCG
ATCCTTTCCATCTAGCCATCACCCTGACTTTCTGATGGATTTTCTTTTCC
GCTTAAATGCTTTTGAGTCCAGGCCATTGAGTCCAGGGGGGCGTTTGAAG
TGAGTCGGTAAGTCGATTTGGTTCTTTTCCTCAAGAGAGTGTACTTTTGT
ATTTTCTGTGAGATCGAATCAATCATGTCCTCCCCCTACTCCCCTTACAC
GGCGCAAGGATATGTTTCACCATTGCCAATGCCCATGCCTACTTTATCAC
AAATATTCGTCAGCAAGTAACCTTGACTTGATGTGTTCTAAATTATAATC
GTCGTCGTGCGTTGCCCCCAGAGGTATCAAGTAAGTGCCAATGGGCCAAC
GGCTGTGCTACGAGCCTCGACGTTGAGGTCCAGAGCGCGTCACAAACCTA
CAGCCTCTATTTATCTCGTGACACCTCCGTTAATTGCAATAGATGGCAAT
ATTCCTAGTCACCATAATTTCCGCGATTTTGGCTCGATTTTGATTTCATC
TTGACCCCTTTTTTAATTCCACCATCCTACCCACCGACCAAGACGTCACA
AAACCCCCGCCAGCCGCCCCACACAAACGAGGCTTCTCCAGCTTGTCCCG
AGGGAATGACGACAACTCGTAGGCTTGTCTGTACTGTAATCCGTGGAGGT
CTCGCCATGCTGCTCAGTAGCACTTGCCGCTCCTCCACCACTCCCACCCC
CCTCGCCGCTGCGTTCCTTCATCGCCACTACCAAACGACAGCTTCCACTT
GCAGCAGCAGGAGCAGCAGCGGGAGCAGCAGCAGCAGCAGGAGCAGCAGT
ACACGGACCACCAGCCCTTCCGCGCCACCAAAGTCCTTGTCTTCAACATC
TGTCACCCCTTTTTTCGCTGGTTCGTCTACCTCCACTTCTTCCTCCTGGT
CCCCTCCCATTTTCATACCGGACGCCCAAACCCTCTACCCGCTCTCCGCC
TTTGCCCTTCCTCAATACCTCCTTGATTCTGGAGAACTCGAAGGTGTTTT
GTTGCCCGCTGGGATGATCCAAGATCGGATCGATAAAATTGCAGAAGACT
TGCTTCTGAACTTGAAAATGAGCCACAGCAGCAGGAGTAGTGATCTATAC
GAAGTCCACCTCCTCTGTGTTTTAAAGGGCGCGGGTCGGTTCTATCACTT
CTTATTCGATTCTCTCCGTCGTCAGGCCCAGGCGTCGCGGACGCCCTTAC
TGATCAAGATGGAGTACATCAAGGTCAGGAGCTATTCAGGCATGCAAAGT
ACCGGTATGGTGGATGTGAGTGGCTGTAAGCTCGACGAGCTGAAAGACAA
AAATGTCGTGATTGTGGAGGATATTATAGATACGGGCAACACTCTTCGGA
AACTTGTCCCTCTTCTTCTCTCCCACCATCTCGCCTCGCTTCGCGTCCTT
GCCCTTTTTCAAAAGCGGGTCTTGTCCTCTCAAGGACTCAGTAAGGCAGG
GAAGGAGGGCGAGGCAATCCCCAATTTGGGCGGGGTAGGCTTCTCGCTGC
CCGATAAGGTAACGAAGAAAGGAAGTTTGCGGTAGGCTACGGCATGGACT
TGGAGGAGCACTACCGAGACGTGGAGCATCTATGCCTGCTCAGTCAGAAG
GGAATTGAGAAACACCTGGGAAAGAAAGAATGAAGGTGGCGTTGACTTCC
TTCCTCCCTCCCTACCTCCCTCCCTATCTACCTACCTACCTTCTTCCCTA
CCTCCCTTCCCCCATCGCTCTCTCCCTCGAACTTACGAGAATAATTTCAA
GATCTGGCGTAGTGTGTGATTGACAGGAATGCTCGTTTCCTGTGGAGGGA
TTCAGGCATGGCCCCCTCCCCTCCCAGGCATCCCTTCTTGTCCCTCTACG
TTCACTGGTGTCGAGGACATGCACACACATTCATGAAGTGGACAAAAACA
AGAGCAAGATGAAACATTAATTGCCCGTTTGCGCGGCGGAGAAACATCAA
AAGAAGGAAGGAGAACAACAATAAGAAGAACAAGAAGAACAAGAAGAGCA
AGAAGAAGTACAAGAAAAAGAAGTACAAGAAGAAGATGAACAAGAACAAG
AAGAAGTACAAGAAGAAAAAGAAAAAGAAGTAAATGAAGAGGAAGAATAA
CAAGTACAAGAACAAGTACAAGAAGAAGAACATGAAGAAGAAGTACAAGA
ACAATTACAAGAAGAAGAACAAGAAGAACAAGTACAACAAGAAGAAGAAC
AAGAAAAAGAAAAAAAGTACCGTTGTAAGATGACAGTAAGATCAAATCAA
AATTCACAAATGTTTGAATACCTCCTCTATGGTTCGGGTGTCTTGGCTCT
TTCAATTTTAAACAAGTCGGCGTTCAGTGGCGCGGAGCGGGCTTGAAACT
CGCCGGAGTCCCACAACAGCAGGTGGTCAGAGGCTTGTCGTCATGACTCC
TCCTCGCCTCCCTCCCTCCCTCCCTCCTCCCTTCCCTCCCTCCCTCTCCT
CCTTCCCTTGACTCGCAAAGAATTTTCTCCATCCCCTGACAGAGTCCACC
CGACAGACCAAGTCACAGTAATGCACATACACACTCTCGCGATACTTCAC
CTCCCTCCCGCCCTCTCTCCCTCCCTTCCCTCTTCCTCCTCCTCCATTCT
TTCTCCCCGTCCTGTTTCCCTCTCTCCCCTTCCTCTCTTCCCCCCTCTCC
TCCCGTTTCCGCACCGTGACAATCATTTCGTACCAGGGCTGAGCTTCGCC
TACGTAGCACCTGCTCTCACACTCGACCTCCTCCCCTTCTTCCACGACCC
ACCCACCCCGTCCTACCGGCACGAAGACATTCATCCAGTTCGTGCACGCC
TTGGGATTATCCGCGTTCGAGGTCTCCCATTCCTCCTCCCCTGCTTCCCT
CCTCTCCTCCCTCCCACCCTCTCTCCTCCCTTCCTCCCCAAGCGACACTC
CCACCCCGTCGGAGACACCTCTTTCTCTCCCTCCCTGCCCGAAGAACAGG
TAAAAAGCCAGGCCATGGAAAGGCCGAGATTTCCCCCTTTCCGACTCCAT
CTTTCCCACAGTCCAACGGGAGGAAAAAACACGGGGGACGGAGGAGGAAG
GGAGGGAGGGCACGGGCGAGGGCGAGGACGAGGGAGGGAGGGAGGACGGG
AAGTGTCGTCGGAGCTCTTCCAAAACATTGTACTCTTCCATGACCCCGGG
CTTAGTTGAGAGCTGTGTGTCCGCGAAAGGGAACTTGGCAAAAAAGACAA
GCCTTTTCCCTATGGCCGCAATACGGAGGGAGCGGCGGAGGGAGGGCGAC
GTCAAATCTACAGGGACGACCCTTGTACCGAATGTCAAGGGGATGGCAGT
GGTGAGGGAGGGAGGGAGGGAGGGGTAGGAGCGGGCGCATTGGTGGAGGA
TAGAGATGTAGCCTTCCGATGAACCGAAATGGCCCAGGATTTCCGCAACG
AGGGCCGTAGGGTGCGAGGGAGGGAGGGAGGACGAGGGAAGGAGGGGGTG
AGAAAGGGTGGAGGAGGGGGAGGAGAAGGAG
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protein sequence of NO23G00350.2

>NO23G00350.2-protein ID=NO23G00350.2-protein|Name=NO23G00350.2|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MTTTRRLVCTVIRGGLAMLLSSTCRSSTTPTPLAAAFLHRHYQTTASTCS
SRSSSGSSSSSRSSSTRTTSPSAPPKSLSSTSVTPFFAGSSTSTSSSWSP
PIFIPDAQTLYPLSAFALPQYLLDSGELEGVLLPAGMIQDRIDKIAEDLL
LNLKMSHSSRSSDLYEVHLLCVLKGAGRFYHFLFDSLRRQAQASRTPLLI
KMEYIKVRSYSGMQSTGMVDVSGCKLDELKDKNVVIVEDIIDTGNTLRKL
VPLLLSHHLASLRVLALFQKRVLSSQGLSKAGKEGEAIPNLGGVGFSLPD
KVTKKGSLR*
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mRNA from alignment at chr23:162046..165882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00350.2 ID=NO23G00350.2|Name=NO23G00350.2|organism=Nannochloropsis oceanica|type=mRNA|length=3837bp|location=Sequence derived from alignment at chr23:162046..165882- (Nannochloropsis oceanica)
GTGTGTTTTGTTTGTTTTAAATTCTAGTCGCCGATATGACAGCCGTCTCG
ATCCTTTCCATCTAGCCATCACCCTGACTTTCTGATGGATTTTCTTTTCC
GCTTAAATGCTTTTGAGTCCAGGCCATTGAGTCCAGGGGGGCGTTTGAAG
TGAGTCGGTAAGTCGATTTGGTTCTTTTCCTCAAGAGAGTGTACTTTTGT
ATTTTCTGTGAGATCGAATCAATCATGTCCTCCCCCTACTCCCCTTACAC
GGCGCAAGGATATGTTTCACCATTGCCAATGCCCATGCCTACTTTATCAC
AAATATTCGTCAGCAAGTAACCTTGACTTGATGTGTTCTAAATTATAATC
GTCGTCGTGCGTTGCCCCCAGAGGTATCAAGTAAGTGCCAATGGGCCAAC
GGCTGTGCTACGAGCCTCGACGTTGAGGTCCAGAGCGCGTCACAAACCTA
CAGCCTCTATTTATCTCGTGACACCTCCGTTAATTGCAATAGATGGCAAT
ATTCCTAGTCACCATAATTTCCGCGATTTTGGCTCGATTTTGATTTCATC
TTGACCCCTTTTTTAATTCCACCATCCTACCCACCGACCAAGACGTCACA
AAACCCCCGCCAGCCGCCCCACACAAACGAGGCTTCTCCAGCTTGTCCCG
AGGGAATGACGACAACTCGTAGGCTTGTCTGTACTGTAATCCGTGGAGGT
CTCGCCATGCTGCTCAGTAGCACTTGCCGCTCCTCCACCACTCCCACCCC
CCTCGCCGCTGCGTTCCTTCATCGCCACTACCAAACGACAGCTTCCACTT
GCAGCAGCAGGAGCAGCAGCGGGAGCAGCAGCAGCAGCAGGAGCAGCAGT
ACACGGACCACCAGCCCTTCCGCGCCACCAAAGTCCTTGTCTTCAACATC
TGTCACCCCTTTTTTCGCTGGTTCGTCTACCTCCACTTCTTCCTCCTGGT
CCCCTCCCATTTTCATACCGGACGCCCAAACCCTCTACCCGCTCTCCGCC
TTTGCCCTTCCTCAATACCTCCTTGATTCTGGAGAACTCGAAGGTGTTTT
GTTGCCCGCTGGGATGATCCAAGATCGGATCGATAAAATTGCAGAAGACT
TGCTTCTGAACTTGAAAATGAGCCACAGCAGCAGGAGTAGTGATCTATAC
GAAGTCCACCTCCTCTGTGTTTTAAAGGGCGCGGGTCGGTTCTATCACTT
CTTATTCGATTCTCTCCGTCGTCAGGCCCAGGCGTCGCGGACGCCCTTAC
TGATCAAGATGGAGTACATCAAGGTCAGGAGCTATTCAGGCATGCAAAGT
ACCGGTATGGTGGATGTGAGTGGCTGTAAGCTCGACGAGCTGAAAGACAA
AAATGTCGTGATTGTGGAGGATATTATAGATACGGTACGCGCTTCTTGTC
GCCTTTCCTCCTTCCCTCCCTCCCTGCGTGATTTTCATAGATTGCATACC
ACGAGCATCGAGTCTCACCCTCCCTGACTCCCTCCCTCCCTCCCTCCCTC
CCTCTATCCCTCCACCCCTTCTCTTCGCAGGGCAACACTCTTCGGAAACT
TGTCCCTCTTCTTCTCTCCCACCATCTCGCCTCGCTTCGCGTCCTTGCCC
TTTTTCAAAAGCGGGTCTTGTCCTCTCAAGGACTCAGTAAGGCAGGGAAG
GAGGGCGAGGCAATCCCCAATTTGGGCGGGGTAGGCTTCTCGCTGCCCGA
TAAGGTAACGAAGAAAGGAAGGTAGGAAGGAGGGAGGGTAGATGCTGAGT
ATGATTGTGTGGGCTTGGTATCAACTCACTCACCTGTTCGCCCTTCCCTC
CCTCCATCCCTCCATTCCTCCATCCCTCCATTCCTTCCTCCCTTCCTCCC
TCCCTTCCTCCTTTCCTCTCTCCATTCCAAGTTTGCGGTAGGCTACGGCA
TGGACTTGGAGGAGCACTACCGAGACGTGGAGCATCTATGCCTGCTCAGT
CAGAAGGGAATTGAGAAACACCTGGGAAAGAAAGAATGAAGGTGGCGTTG
ACTTCCTTCCTCCCTCCCTACCTCCCTCCCTATCTACCTACCTACCTTCT
TCCCTACCTCCCTTCCCCCATCGCTCTCTCCCTCGAACTTACGAGAATAA
TTTCAAGATCTGGCGTAGTGTGTGATTGACAGGAATGCTCGTTTCCTGTG
GAGGGATTCAGGCATGGCCCCCTCCCCTCCCAGGCATCCCTTCTTGTCCC
TCTACGTTCACTGGTGTCGAGGACATGCACACACATTCATGAAGTGGACA
AAAACAAGAGCAAGATGAAACATTAATTGCCCGTTTGCGCGGCGGAGAAA
CATCAAAAGAAGGAAGGAGAACAACAATAAGAAGAACAAGAAGAACAAGA
AGAGCAAGAAGAAGTACAAGAAAAAGAAGTACAAGAAGAAGATGAACAAG
AACAAGAAGAAGTACAAGAAGAAAAAGAAAAAGAAGTAAATGAAGAGGAA
GAATAACAAGTACAAGAACAAGTACAAGAAGAAGAACATGAAGAAGAAGT
ACAAGAACAATTACAAGAAGAAGAACAAGAAGAACAAGTACAACAAGAAG
AAGAACAAGAAAAAGAAAAAAAGTACCGTTGTAAGATGACAGTAAGATCA
AATCAAAATTCACAAATGTTTGAATACCTCCTCTATGGTTCGGGTGTCTT
GGCTCTTTCAATTTTAAACAAGTCGGCGTTCAGTGGCGCGGAGCGGGCTT
GAAACTCGCCGGAGTCCCACAACAGCAGGTGGTCAGAGGCTTGTCGTCAT
GACTCCTCCTCGCCTCCCTCCCTCCCTCCCTCCTCCCTTCCCTCCCTCCC
TCTCCTCCTTCCCTTGACTCGCAAAGAATTTTCTCCATCCCCTGACAGAG
TCCACCCGACAGACCAAGTCACAGTAATGCACATACACACTCTCGCGATA
CTTCACCTCCCTCCCGCCCTCTCTCCCTCCCTTCCCTCTTCCTCCTCCTC
CATTCTTTCTCCCCGTCCTGTTTCCCTCTCTCCCCTTCCTCTCTTCCCCC
CTCTCCTCCCGTTTCCGCACCGTGACAATCATTTCGTACCAGGGCTGAGC
TTCGCCTACGTAGCACCTGCTCTCACACTCGACCTCCTCCCCTTCTTCCA
CGACCCACCCACCCCGTCCTACCGGCACGAAGACATTCATCCAGTTCGTG
CACGCCTTGGGATTATCCGCGTTCGAGGTCTCCCATTCCTCCTCCCCTGC
TTCCCTCCTCTCCTCCCTCCCACCCTCTCTCCTCCCTTCCTCCCCAAGCG
ACACTCCCACCCCGTCGGAGACACCTCTTTCTCTCCCTCCCTGCCCGAAG
AACAGGTAAAAAGCCAGGCCATGGAAAGGCCGAGATTTCCCCCTTTCCGA
CTCCATCTTTCCCACAGTCCAACGGGAGGAAAAAACACGGGGGACGGAGG
AGGAAGGGAGGGAGGGCACGGGCGAGGGCGAGGACGAGGGAGGGAGGGAG
GACGGGAAGTGTCGTCGGAGCTCTTCCAAAACATTGTACTCTTCCATGAC
CCCGGGCTTAGTTGAGAGCTGTGTGTCCGCGAAAGGGAACTTGGCAAAAA
AGACAAGCCTTTTCCCTATGGCCGCAATACGGAGGGAGCGGCGGAGGGAG
GGCGACGTCAAATCTACAGGGACGACCCTTGTACCGAATGTCAAGGGGAT
GGCAGTGGTGAGGGAGGGAGGGAGGGAGGGGTAGGAGCGGGCGCATTGGT
GGAGGATAGAGATGTAGCCTTCCGATGAACCGAAATGGCCCAGGATTTCC
GCAACGAGGGCCGTAGGGTGCGAGGGAGGGAGGGAGGACGAGGGAAGGAG
GGGGTGAGAAAGGGTGGAGGAGGGGGAGGAGAAGGAG
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Coding sequence (CDS) from alignment at chr23:162046..165882-

>NO23G00350.2 ID=NO23G00350.2|Name=NO23G00350.2|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr23:162046..165882- (Nannochloropsis oceanica)
ATGACGACAACTCGTAGGCTTGTCTGTACTGTAATCCGTGGAGGTCTCGC
CATGCTGCTCAGTAGCACTTGCCGCTCCTCCACCACTCCCACCCCCCTCG
CCGCTGCGTTCCTTCATCGCCACTACCAAACGACAGCTTCCACTTGCAGC
AGCAGGAGCAGCAGCGGGAGCAGCAGCAGCAGCAGGAGCAGCAGTACACG
GACCACCAGCCCTTCCGCGCCACCAAAGTCCTTGTCTTCAACATCTGTCA
CCCCTTTTTTCGCTGGTTCGTCTACCTCCACTTCTTCCTCCTGGTCCCCT
CCCATTTTCATACCGGACGCCCAAACCCTCTACCCGCTCTCCGCCTTTGC
CCTTCCTCAATACCTCCTTGATTCTGGAGAACTCGAAGGTGTTTTGTTGC
CCGCTGGGATGATCCAAGATCGGATCGATAAAATTGCAGAAGACTTGCTT
CTGAACTTGAAAATGAGCCACAGCAGCAGGAGTAGTGATCTATACGAAGT
CCACCTCCTCTGTGTTTTAAAGGGCGCGGGTCGGTTCTATCACTTCTTAT
TCGATTCTCTCCGTCGTCAGGCCCAGGCGTCGCGGACGCCCTTACTGATC
AAGATGGAGTACATCAAGGTCAGGAGCTATTCAGGCATGCAAAGTACCGG
TATGGTGGATGTGAGTGGCTGTAAGCTCGACGAGCTGAAAGACAAAAATG
TCGTGATTGTGGAGGATATTATAGATACGGGCAACACTCTTCGGAAACTT
GTCCCTCTTCTTCTCTCCCACCATCTCGCCTCGCTTCGCGTCCTTGCCCT
TTTTCAAAAGCGGGTCTTGTCCTCTCAAGGACTCAGTAAGGCAGGGAAGG
AGGGCGAGGCAATCCCCAATTTGGGCGGGGTAGGCTTCTCGCTGCCCGAT
AAGGTAACGAAGAAAGGAAGTTTGCGGTAG
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Synonyms
Publications