Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr23 genome chr23:162046..165882 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00350.2 vs.
Match: EWM22995.1 (hypoxanthine-guanine phosphoribosyltransferase, partial [Nannochloropsis gaditana])
HSP 1 Score: 168.3 bits (425), Expect = 3.700e-38
Identity = 116/217 (53.46%), Postives = 140/217 (64.52%), Query Frame = 0
Query: 31 TPLAAAF-LHRHYQTTASTCSSRSSSGSSSSSRSSSTRTTSPSAPPKSLSSTSVTPFFAGSSTSTSSSWSPPIFIPDAQTLYPLSAFALPQYLLDSGELEGVLLPAGMIQDRIDKIAEDLLLNLKMSHSSRSSDLY---EVHLLCVLKGAGRFYHFLFDSLRRQAQASRTPLLIKMEYIKVRSYSGMQSTGMVDVSGCKLDELKDKNVVIVEDIIDT 244
T LA+AF LH T C S SS +S P P L +S + SS S +SPPI IPDAQ LYPLSAFALP + L +GELE VLLP+G+I+DRIDK+A+DLL +L + L E+HLLCVLKGA RF+H L SLRR+AQA R PL I++E+I VRSYSGMQSTG VDVSGC L L+ +NVV+VED+IDT
Sbjct: 33 TCLASAFYLHPTLPTAFIRCPSIPSSNTSPR----------PKCFPFVLCFSSTS-----SSPPPPSVFSPPIVIPDAQPLYPLSAFALPHHFLAAGELEAVLLPSGLIEDRIDKMAQDLLDDLFPAPFPPPGGLLPVCELHLLCVLKGASRFFHALLASLRRRAQAQRLPLQIQIEFITVRSYSGMQSTGTVDVSGCVLGNLQGRNVVLVEDMIDT 234
The following BLAST results are available for this feature:
BLAST of NO23G00350.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 Expect = 3.70e-38 / Id = 53.46 Sequence EWM22995.1
Match Name E-value Identity Description
EWM22995.1 3.700e-38 53.46 hypoxanthine-guanine phosphoribosyltransferase, pa... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO23G00350.2 ID=NO23G00350.2|Name=NO23G00350.2|organism=Nannochloropsis oceanica|type=mRNA|length=3531bp back to top protein sequence of NO23G00350.2
>NO23G00350.2-protein ID=NO23G00350.2-protein|Name=NO23G00350.2|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp back to top mRNA from alignment at chr23:162046..165882-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00350.2 ID=NO23G00350.2|Name=NO23G00350.2|organism=Nannochloropsis oceanica|type=mRNA|length=3837bp|location=Sequence derived from alignment at chr23:162046..165882- (Nannochloropsis oceanica)ATGACGACAACTCGTAGGCTTGTCTGTACTGTAATCCGTGGAGGT
CTCGCCATGCTGCTCAGTAGCACTTGCCGCTCCTCCACCACTCCCACCCC
CCTCGCCGCTGCGTTCCTTCATCGCCACTACCAAACGACAGCTTCCACTT
GCAGCAGCAGGAGCAGCAGCGGGAGCAGCAGCAGCAGCAGGAGCAGCAGT
ACACGGACCACCAGCCCTTCCGCGCCACCAAAGTCCTTGTCTTCAACATC
TGTCACCCCTTTTTTCGCTGGTTCGTCTACCTCCACTTCTTCCTCCTGGT
CCCCTCCCATTTTCATACCGGACGCCCAAACCCTCTACCCGCTCTCCGCC
TTTGCCCTTCCTCAATACCTCCTTGATTCTGGAGAACTCGAAGGTGTTTT
GTTGCCCGCTGGGATGATCCAAGATCGGATCGATAAAATTGCAGAAGACT
TGCTTCTGAACTTGAAAATGAGCCACAGCAGCAGGAGTAGTGATCTATAC
GAAGTCCACCTCCTCTGTGTTTTAAAGGGCGCGGGTCGGTTCTATCACTT
CTTATTCGATTCTCTCCGTCGTCAGGCCCAGGCGTCGCGGACGCCCTTAC
TGATCAAGATGGAGTACATCAAGGTCAGGAGCTATTCAGGCATGCAAAGT
ACCGGTATGGTGGATGTGAGTGGCTGTAAGCTCGACGAGCTGAAAGACAA
AAATGTCGTGATTGTGGAGGATATTATAGATACG GTACGCGCTTCTTGTC
GCCTTTCCTCCTTCCCTCCCTCCCTGCGTGATTTTCATAGATTGCATACC
ACGAGCATCGAGTCTCACCCTCCCTGACTCCCTCCCTCCCTCCCTCCCTC
CCTCTATCCCTCCACCCCTTCTCTTCGCAGGGCAACACTCTTCGGAAACT
TGTCCCTCTTCTTCTCTCCCACCATCTCGCCTCGCTTCGCGTCCTTGCCC
TTTTTCAAAAGCGGGTCTTGTCCTCTCAAGGACTCAGTAAGGCAGGGAAG
GAGGGCGAGGCAATCCCCAATTTGGGCGGGGTAGGCTTCTCGCTGCCCGA
TAAGGTAACGAAGAAAGGAAG GTAGGAAGGAGGGAGGGTAGATGCTGAGT
ATGATTGTGTGGGCTTGGTATCAACTCACTCACCTGTTCGCCCTTCCCTC
CCTCCATCCCTCCATTCCTCCATCCCTCCATTCCTTCCTCCCTTCCTCCC
TCCCTTCCTCCTTTCCTCTCTCCATTCCAAGTTTGCGGTAG back to top Coding sequence (CDS) from alignment at chr23:162046..165882-
>NO23G00350.2 ID=NO23G00350.2|Name=NO23G00350.2|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr23:162046..165882- (Nannochloropsis oceanica) back to top