NO23G00200.1, NO23G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00200.1
Unique NameNO23G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length585
Alignment locationchr23:89362..90287 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:89362..90287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00200.1 vs.
Match: EWM23011.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 241.9 bits (616), Expect = 1.700e-60
Identity = 120/192 (62.50%), Postives = 149/192 (77.60%), Query Frame = 0 
Query:    2 ASSKTSSL--FPSSLFLLLLIAALAISYQYLSTHHAQIEAMLGGKRARQYESFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVVGLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLRRPLLTILCGYACAWVGHFVIEGNRPATFTYAVFSFIGDFRMWWETVGELGNKFI 192
            A  KTS L    +  F L+L+ AL  SY YLS+HHA++++ LGG R R +E+F+ FYK +YR++H+DD NRYLHF GTT+ LA AA+EP L +AA  AVVVGLNV+ELTYM  +GA+EGAAMLL YL L+    RSL RPLL +L GY CAW+GHF +EGN+PATFTYAVFSF+GDFRMWWETVGELG + +
Sbjct:    5 AKGKTSFLGNVLTPSFYLVLLTALTTSYHYLSSHHAEVDSYLGGPRVRSFENFETFYKRVYREQHADDHNRYLHFFGTTLVLAYAASEPLLLVAATMAVVVGLNVYELTYMFKHGALEGAAMLLTYLVLSRALLRSLSRPLLPLLLGYGCAWMGHFFLEGNKPATFTYAVFSFMGDFRMWWETVGELGRRML 196
The following BLAST results are available for this feature:
BLAST of NO23G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23011.11.700e-6062.50transmembrane protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00200NO23G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00200.1NO23G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00200.1.cds1NO23G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00200.1.cds2NO23G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00200.1.cds3NO23G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00200.1 ID=NO23G00200.1|Name=NO23G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=585bp
ATGGCCTCCTCCAAAACCTCCTCCCTCTTTCCCTCCTCCCTCTTTCTCCT
CCTCCTTATCGCGGCCCTGGCCATATCCTACCAGTACTTATCCACTCACC
ACGCGCAGATTGAGGCTATGCTAGGTGGAAAGCGAGCACGGCAGTATGAG
AGCTTTGACGCGTTTTACAAGGGCATGTATCGGAAGGAGCACTCTGACGA
CAAGAACCGTTATCTGCACTTCATCGGCACCACCATTGCTCTTGCATCTG
CGGCTGCTGAGCCAACCCTCTTTCTTGCTGCCCTAGCTGCAGTGGTCGTA
GGGCTTAATGTGTTTGAGCTCACGTACATGCGTTCCAATGGCGCCATCGA
AGGGGCAGCAATGCTCCTGGCCTACCTCTCTCTCGCGTACATCCCCCGTC
GATCCCTCCGTCGGCCCCTCCTTACCATCCTCTGTGGGTATGCATGTGCC
TGGGTCGGTCATTTCGTGATAGAGGGGAATAGACCTGCCACGTTTACGTA
TGCCGTCTTCTCTTTCATAGGCGACTTTAGGATGTGGTGGGAGACGGTAG
GGGAGCTAGGAAATAAATTCATCAACATCAAGTAA
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protein sequence of NO23G00200.1

>NO23G00200.1-protein ID=NO23G00200.1-protein|Name=NO23G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MASSKTSSLFPSSLFLLLLIAALAISYQYLSTHHAQIEAMLGGKRARQYE
SFDAFYKGMYRKEHSDDKNRYLHFIGTTIALASAAAEPTLFLAALAAVVV
GLNVFELTYMRSNGAIEGAAMLLAYLSLAYIPRRSLRRPLLTILCGYACA
WVGHFVIEGNRPATFTYAVFSFIGDFRMWWETVGELGNKFINIK*
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mRNA from alignment at chr23:89362..90287+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00200.1 ID=NO23G00200.1|Name=NO23G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=926bp|location=Sequence derived from alignment at chr23:89362..90287+ (Nannochloropsis oceanica)
ATGGCCTCCTCCAAAACCTCCTCCCTCTTTCCCTCCTCCCTCTTTCTCCT
CCTCCTTATCGCGGCCCTGGCCATATCCTACCAGTACTTATCCACTCACC
ACGCGCAGATTGAGGCTATGCTAGGTGGAAAGCGAGCACGGCAGTATGAG
AGCTTTGACGCGTTTTACAAGGGCATGTATCGGTGAGTGGAAGGAAGGGA
CGGAGGGATCGAGGGACGGAGGGACGGGCAAAAGCAGGGAGGAAGGCAGG
GTTGTGGGCCTCTACCTCTATTAACTCTATAGAGTGCTAGTCGCTTTGCC
TGTCCTGTAGATCAATGGCAGCACGGAGCACAACATGGACTCGTGTCGTG
AATGTTGTTCTCATGACATGCCTTTCCTCCTCCCTTACTTCCCTATACGC
GTCAGGAAGGAGCACTCTGACGACAAGAACCGTTATCTGCACTTCATCGG
CACCACCATTGCTCTTGCATCTGCGGCTGCTGAGCCAACCCTCTTTCTTG
CTGCCCTAGCTGCAGTGGTCGTAGGGCTTAATGTGTTTGAGCTCACGTAC
ATGGTGAGGAAGGGAGGGAGGGAGGGCAGGAGGGAGAGAGCACGGTGAAA
GGGAAGGTGGCGACAAACACGACCAATCACTCACAGCATCCTCCCCCTCC
GTCTCCATGTTCCCCTACCAGCGTTCCAATGGCGCCATCGAAGGGGCAGC
AATGCTCCTGGCCTACCTCTCTCTCGCGTACATCCCCCGTCGATCCCTCC
GTCGGCCCCTCCTTACCATCCTCTGTGGGTATGCATGTGCCTGGGTCGGT
CATTTCGTGATAGAGGGGAATAGACCTGCCACGTTTACGTATGCCGTCTT
CTCTTTCATAGGCGACTTTAGGATGTGGTGGGAGACGGTAGGGGAGCTAG
GAAATAAATTCATCAACATCAAGTAA
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Coding sequence (CDS) from alignment at chr23:89362..90287+

>NO23G00200.1 ID=NO23G00200.1|Name=NO23G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at chr23:89362..90287+ (Nannochloropsis oceanica)
ATGGCCTCCTCCAAAACCTCCTCCCTCTTTCCCTCCTCCCTCTTTCTCCT
CCTCCTTATCGCGGCCCTGGCCATATCCTACCAGTACTTATCCACTCACC
ACGCGCAGATTGAGGCTATGCTAGGTGGAAAGCGAGCACGGCAGTATGAG
AGCTTTGACGCGTTTTACAAGGGCATGTATCGGAAGGAGCACTCTGACGA
CAAGAACCGTTATCTGCACTTCATCGGCACCACCATTGCTCTTGCATCTG
CGGCTGCTGAGCCAACCCTCTTTCTTGCTGCCCTAGCTGCAGTGGTCGTA
GGGCTTAATGTGTTTGAGCTCACGTACATGCGTTCCAATGGCGCCATCGA
AGGGGCAGCAATGCTCCTGGCCTACCTCTCTCTCGCGTACATCCCCCGTC
GATCCCTCCGTCGGCCCCTCCTTACCATCCTCTGTGGGTATGCATGTGCC
TGGGTCGGTCATTTCGTGATAGAGGGGAATAGACCTGCCACGTTTACGTA
TGCCGTCTTCTCTTTCATAGGCGACTTTAGGATGTGGTGGGAGACGGTAG
GGGAGCTAGGAAATAAATTCATCAACATCAAGTAA
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Synonyms
Publications