NO23G00130.1, NO23G00130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G00130.1
Unique Name	NO23G00130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1386
Alignment location	chr23:66013..69947 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:66013..69947 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO23G00130.1 vs.
Match: OLP91954.1 (Exoglucanase 3 [Symbiodinium microadriaticum])

HSP 1 Score: 489.6 bits (1259), Expect = 1.100e-134
Identity = 228/414 (55.07%), Postives = 292/414 (70.53%), Query Frame = 0

Query:   49 TNIFKGADMYVNPYFQEELDSSIATASGEVKKTLKSIRGLSSAYWLDVKSKVHRADGPGDDFFSMEGILEDAASKNPPPATTFIVYDLPNRDCHAHASNGEICCTYLPDGRCDYQAEGD--CKEGIQTYKKQYIDPIVQVLKKFQGKVPIALVIEPDSLPNLATNLGDPRCGSKATVNAYEQGVAYAVEQIGTHAPDVMMYLDSSHGGWLGWEHSLMDYLAILEKINVAKHVRGFALNTANYQPVGEMCPFWDYCLGGKNVNATCCADPCKLAQQYNAGNNEMNFALMMHNKTTGMWPSFEPRFVIDTGRNGQSGMRESCSNWCNIRGAGIGHRPTTDTGSP-LVDAFLWLKTPGESDGCTQILPGPDKTQCPRFDSMCMSPDSIGSLEMDPRAPEAGLWFDYQIKELAANANL 460
            +N F+    YVNP +Q  L SSI TA G +K+TL+++  L SAYWLD + K+H     G    SMEGILEDAASK  P    FIVYDLPNRDCHA ASNGE+CC+Y  DGRCDY A GD  CK+G++ YK++YID I  VL++F G+VP+ LVIEPDSLPNL+TN  DPRCG+ AT +AY +GV+YAV+ +    P   +YLD+ HGGWLGW+ ++ DY+ ++ ++ V+ H+RGFA N A YQ VGE+C  +D+CL   + + +CC DPC L  ++N  +NE+ +AL +    +     FEP  +IDTGRNG +GMR  C+NWCNIRGAG+G   TT+T  P +VDA+ WLKTPGESDGC+Q L  PD + CPRFD  C S DSI     +PRAPEAG WFDYQIK+LA NA L
Sbjct:   84 SNPFEDKVFYVNPSYQASLTSSIETAEGPIKETLEAMMDLPSAYWLDKRDKIH-----GTSTNSMEGILEDAASKPVPELVVFIVYDLPNRDCHAKASNGELCCSYKDDGRCDYLAVGDGSCKDGLKQYKEEYIDQIASVLREFSGRVPVVLVIEPDSLPNLSTNQHDPRCGNAATKSAYTRGVSYAVKALAEADPHAAIYLDAGHGGWLGWKDNMKDYVQMIRRLRVSDHIRGFASNVAGYQYVGEVCEEYDWCLNNAHPDDSCCQDPCGLTSEWNPSHNELQYALHLRKAMSEGIRGFEPHMIIDTGRNGVAGMRTDCANWCNIRGAGVGLAATTNTAKPSVVDAYFWLKTPGESDGCSQTL--PDGSTCPRFDEDCASIDSISFRPEEPRAPEAGQWFDYQIKQLAENARL 490

The following BLAST results are available for this feature:

BLAST of NO23G00130.1 vs.

BLAST of NO23G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
OLP91954.1	1.100e-134	55.07	Exoglucanase 3 [Symbiodinium microadriaticum]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G00130	NO23G00130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00130.1	NO23G00130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00130.1.cds1	NO23G00130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds2	NO23G00130.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds3	NO23G00130.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds4	NO23G00130.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds5	NO23G00130.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds6	NO23G00130.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds7	NO23G00130.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds8	NO23G00130.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds9	NO23G00130.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds10	NO23G00130.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds11	NO23G00130.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds12	NO23G00130.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds13	NO23G00130.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00130.1.cds14	NO23G00130.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:66013..69947+
coding sequence from alignment at chr23:66013..69947+

mRNA sequence

>NO23G00130.1 ID=NO23G00130.1|Name=NO23G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
ATGCCTCGTCTTTTTCACCCTGCTGCCGCCACGGCCGCTGTGCTCGCCTC
CATGCTCCTCTCCTCCTTCACTTCCGTCCAGGCAGCAATCAAGACGCAGA
ACATGCGTGGCATGGCTGTCACCAGCACGGGCAAGCCTAGGGGCACCAAC
ATTTTTAAGGGCGCGGACATGTACGTCAACCCCTACTTCCAAGAGGAGCT
CGACTCCTCCATTGCCACGGCCTCGGGGGAAGTCAAGAAAACCCTGAAGT
CGATCCGCGGCCTCTCTTCCGCGTATTGGTTGGACGTCAAAAGCAAGGTC
CACCGCGCCGACGGCCCGGGTGATGATTTTTTTTCTATGGAAGGCATTCT
TGAGGATGCGGCTTCCAAGAACCCTCCCCCCGCCACTACTTTTATCGTCT
ACGACTTGCCCAATCGCGACTGCCACGCTCATGCCTCCAACGGCGAGATC
TGCTGCACCTACCTCCCTGACGGCCGCTGCGACTACCAGGCGGAGGGAGA
TTGCAAAGAGGGCATTCAGACGTACAAGAAGCAGTACATTGATCCCATTG
TCCAGGTCCTGAAGAAGTTCCAGGGGAAGGTTCCCATCGCCCTCGTCATC
GAGCCTGACTCTCTTCCCAATCTGGCCACTAACCTCGGAGACCCCCGCTG
CGGCTCTAAGGCTACCGTGAACGCCTACGAGCAAGGCGTGGCCTACGCCG
TCGAACAGATCGGAACCCATGCCCCGGACGTGATGATGTACCTCGACTCG
TCCCACGGCGGCTGGCTGGGCTGGGAGCACTCGCTCATGGACTACCTGGC
CATCCTCGAGAAGATCAACGTCGCCAAGCACGTCCGCGGCTTTGCCCTCA
ACACGGCCAATTATCAGCCCGTCGGGGAAATGTGCCCCTTCTGGGATTAT
TGCCTCGGGGGGAAGAACGTCAACGCCACGTGTTGCGCGGACCCGTGCAA
GCTTGCGCAGCAGTACAACGCAGGGAACAACGAGATGAACTTTGCCCTGA
TGATGCACAATAAGACCACCGGCATGTGGCCCTCCTTCGAGCCGCGCTTC
GTCATCGACACGGGCCGCAACGGGCAGTCCGGCATGCGCGAGTCTTGCTC
CAACTGGTGCAACATCCGCGGGGCTGGTATTGGGCACCGCCCCACCACCG
ACACAGGCTCGCCGTTGGTGGACGCCTTCCTGTGGCTCAAGACCCCCGGG
GAGTCGGACGGGTGCACGCAGATCTTGCCGGGCCCGGATAAGACGCAGTG
CCCTCGTTTTGACTCCATGTGCATGTCCCCCGACTCCATTGGCTCCCTTG
AGATGGATCCGCGCGCGCCCGAGGCCGGCCTTTGGTTCGACTACCAGATC
AAGGAGCTGGCCGCCAATGCCAACCTGGACGGTTAA

protein sequence of NO23G00130.1

>NO23G00130.1-protein ID=NO23G00130.1-protein|Name=NO23G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MPRLFHPAAATAAVLASMLLSSFTSVQAAIKTQNMRGMAVTSTGKPRGTN
IFKGADMYVNPYFQEELDSSIATASGEVKKTLKSIRGLSSAYWLDVKSKV
HRADGPGDDFFSMEGILEDAASKNPPPATTFIVYDLPNRDCHAHASNGEI
CCTYLPDGRCDYQAEGDCKEGIQTYKKQYIDPIVQVLKKFQGKVPIALVI
EPDSLPNLATNLGDPRCGSKATVNAYEQGVAYAVEQIGTHAPDVMMYLDS
SHGGWLGWEHSLMDYLAILEKINVAKHVRGFALNTANYQPVGEMCPFWDY
CLGGKNVNATCCADPCKLAQQYNAGNNEMNFALMMHNKTTGMWPSFEPRF
VIDTGRNGQSGMRESCSNWCNIRGAGIGHRPTTDTGSPLVDAFLWLKTPG
ESDGCTQILPGPDKTQCPRFDSMCMSPDSIGSLEMDPRAPEAGLWFDYQI
KELAANANLDG*

mRNA from alignment at chr23:66013..69947+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G00130.1 ID=NO23G00130.1|Name=NO23G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=3935bp|location=Sequence derived from alignment at chr23:66013..69947+ (Nannochloropsis oceanica)
ATGCCTCGTCTTTTTCACCCTGCTGCCGCCACGGCCGCTGTGCTCGCCTC
CATGCTCCTCTCCTCCTTCACTTCCGTCCAGGCAGCAATCAAGACGCAGA
ACATGCGTGGCATGGCTGTCACCAGCACGGGCAAGCCTAGGGGCACCAAC
ATTTTTAAGGGTAAGGAAGGAGGGAAAGAGGGAGGATATGGAACAGGGGC
AAGCAGGGGAGTGTTGCCCTGTGTACGTGTCGAGAGGGACCCATAAGATG
TAATAAGAATATCCATGAGAGCGATAGTTGCAGCAGTCTTGTGAGGAAAA
GGTGAGGGTGGTGGTGGTGCGCTGGCGGGAGTCACATACTGAACAACTCA
AACAGCCACAGGGAGTGTCTCCGTCTTCCCCTTTCCCTTTCATTTTCCGT
CTTCCCCGCCCTCCTACTCTCCCTCCCTTCCTCTTCCTCGATCCACCAGA
ATGTGTAATCGCACTCATTCCCCTCTCTTCCTCCCTCCCTGCCTCCCTAG
GCGCGGACATGTACGTCAACCCCTACTTCCAAGAGGAGCTCGACTCCTCC
ATTGCCACGGCCTCGGGGGAAGTCAAGGTAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGACAGTTTCCCTCTTCAAGTTTTACCCTTCTGGACGCACG
TCACTTACTTCCCTTCCCTCCCTCCCTCCCTCCCTCCAACAGAAAACCCT
GAAGTCGATCCGCGGCCTCTCTTCCGCGTATTGGTTGGACGTCAAAAGCA
AGGTACGGAAGGGAGGGAGGGAATGGGAGAAATGGATATTTTGCCCCCTC
GATACAATCATTTGATGTAGATTGATTGTACCCGTACTCATTCCCTCCCT
CCCTCCCTCCCTTCCTCCCTCCCCTCCCCTCCTCTCTCAGGTCCACCGCG
CCGACGGCCCGGGTGATGATTTTTTTTCTATGGAAGGCATTCTTGAGGAT
GCGGCTTCCAAGAACCCTCCCCCCGCCACTACTTTTATCGTCTACGACTT
GCCCAATCGGTACGTCGTGCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCC
TCCCTCCTCCCCGTTTTCCCTATTTGGTGTGTCGTCCTGGATCCCATCTT
TCCATCTTTGAGCGACTCTCTCACTTTGACACCTCGCTTTAAACGCCCTT
AACGCCTCTAACGATGGCATCTGCTGCATGTCCCTGCCCGACGACCGCTC
CCTCAACTCGCATATGTTTCCCTCCCTCCCTCCCTCAGCGACTGCCACGC
TCATGCCTCCAACGGCGAGATCTGCTGCACCTACCTCCCTGACGGCCGCT
GCGACTACCAGGCGGAGGGAGATTGCAAAGAGGGCATTCAGACGTACAAG
AAGCAGTACATTGATCCCATTGTCCAGGTACCTCCCTCCCTCCTCCCTCC
CTCCCTCCCTCCCTCCATCTTTCCCCCCCCTCTATGTGTGTGTGTCTTAT
TTTTTCCCGCCTTCCTTATTGTCCCCTCCCTTCCCCTAACCCTCCTCCTC
TCTCCCTTCTCTCCCACCAGCGTGTCCGCCTCCGGAGCCCGCCCTCCACT
CTGAAACCCACATCTCCCACATACTTCCCTCCACCCCCCTCCCCCCCTCC
CTCCCTCCCTCAGGTCCTGAAGAAGTTCCAGGGGAAGGTTCCCATCGCCC
TCGTCATCGAGCCTGACTCTCTTCCCAATCTGGCCACTAACCTCGGAGAC
CCCCGCTGCGGCTCTAAGGTACACCCTCCCTCCCTCCCTCCCTCCGTTCC
GTTTCCAAGCCCTCCCATTCCCCACAATACAATCGCATTCACTTTCCTTT
TCTCTTCTTCCTCCCTCTCTCGCTCTTTCCAGGCTACCGTGAACGCCTAC
GAGCAAGGCGTGGCCTACGCCGTCGAACAGATCGGAACCCATGTAAGGAA
GGAGGGAGGGAGGGAGGGTAAGAAGTAATGTGATCACCGTGTGTCGGTAC
TCACACTCTTCCTGTCCTTTCCTAACTCATCCCTTCCCTCCCTCCCTCCC
TCTCCTCCTCCCCAAGGCCCCGGACGTGATGATGTACCTCGACTCGTCCC
ACGGCGGCTGGCTGGGCTGGGAGCACTCGCTCATGGACTACCTGGCCATC
CTCGAGAAGATCAACGTCGTACGTCCCTCCCTCCCTCCCTCCTCGCCTGC
CTGACGTTTACTTGCTTGCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTTGTCCTGCATTTCCCCCCACTACAACTCGAATCCACACTCCCTCCC
TCCTTCCCTCCCTCCCTCCTTCCCTCCCTCCCCCCAGGCCAAGCACGTCC
GCGGCTTTGCCCTCAACACGGCCAATTATCAGCCCGTCGGGGAAATGTGC
CCCTTCTGGGATTATTGCCTCGGGGGGAAGAACGTCAACGCCACGTACGG
CCCTCCCTCCCTCTTTCCCTCCCTCCTGTATTCGACTCATGTCTAATCGC
TTCTTCGGCGGGCGTAGATTTATATGGTCCCTCCCTCCCTCCCTCCCTTC
CTTCCTCCCTCCAGAACCTCCTTCCTTCCCTGCCTTTTCCGAAATCCTCG
AGGCATCATTCTGACCATCTCCCTCCCTCCCTCCTCCCAGGTGTTGCGCG
GACCCGTGCAAGCTTGCGCAGCAGTACAACGCAGGGAACAACGAGATGAA
CTTTGCCCTGATGATGCACAATAAGACCACCGGCATGTGGCCCTCCTTCG
AGCCGCGCTTCGTCATCGACACGGGCCGCAACGGGCAGGTAGGGAGAGAG
GGAGGGAGGGAGGGAGGGAGTAAGCACAAGCATCTGGACATGGGCCGCTG
TATCACACATGGGTATTACCACCAGAATAAGTGTCCTCCAGAACGTACAC
TCAACCACCTTCCCTCCCTCCCTCCCGCCCTCCCTAGTCCGGCATGCGCG
AGTCTTGCTCCAACTGGTGCAACATCCGCGGGGCTGGTATTGGGCACCGC
CCCACCACCGACACAGTACGTTTCCTCCCACCCTTCCTTCTCTCCCCCTT
CCTTCTCTCCCTCCTTCTCTCCCTCCCTCTCTCCCTCTTTCCTTCCATCC
CTCCTTCCCTCCCTCCCTCCTTGCCTCATCCTGCCTTTTTTGACCCGGCA
TTTCCCACGTAGCTTAATCTCATCTTCTTATTGTAATCATTTTGATTAGC
TGTAAACCTTACTTAAACCTAATTACTTTGACTTATACAACACCTATCTT
CTCACGCAGGGCTCGCCGTTGGTGGACGCCTTCCTGTGGCTCAAGACCCC
CGGGGAGTCGGACGGGTGCACGCAGGTACGTGAGTAGAAGGAGGAAGGTT
TTGTGCGCAAGAGGGTGCGTGAATGATAATGAATGATAGTGCTGCTTTCA
GAGCACTCCCTCTCTATGTATATATGTAATACGGGCCGGCCTCTGTTTGG
TCCCGGGCGTGTGGATGGATGGGCGAATGTATGTGTCGTGTGTCCGCGGG
GTTGTTGCGCGGGTGTCTGTCTCTGTCCCTCTCTCTACCGCGTGTGAGTT
TTTCTATGTATGTACTTGTACCAATATACATATGTACATATATCCGTTCA
ACGAGGCGTAAAGGGACGCTCCCCACTCACATTTTCCTCACTCCCTCCCT
CCCTCCTTCCCGCTTAGATCTTGCCGGGCCCGGATAAGACGCAGTGCCCT
CGTTTTGACTCCATGTGCATGTCCCCCGACTCCATTGGCTCCCTTGAGAT
GGATCCGCGCGCGCCCGAGGCCGGCCTTTGGTTCGACTACCAGGTACGCT
GCTAAGGAGGGAGGGAGGGATGGAAGGCGGAAGAAGCGGGTGCGGAGGAT
TAAATTTGGTCGTCCACGATTGAGGATCAGGTGATGTTACGCGACAGCTG
ACACTCTCTCTCTCGCTCTCTCCCTCCCTCGGCTCATCCACAACAGATCA
AGGAGCTGGCCGCCAATGCCAACCTGGACGGTTAA

Coding sequence (CDS) from alignment at chr23:66013..69947+

>NO23G00130.1 ID=NO23G00130.1|Name=NO23G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr23:66013..69947+ (Nannochloropsis oceanica)
ATGCCTCGTCTTTTTCACCCTGCTGCCGCCACGGCCGCTGTGCTCGCCTC
CATGCTCCTCTCCTCCTTCACTTCCGTCCAGGCAGCAATCAAGACGCAGA
ACATGCGTGGCATGGCTGTCACCAGCACGGGCAAGCCTAGGGGCACCAAC
ATTTTTAAGGGCGCGGACATGTACGTCAACCCCTACTTCCAAGAGGAGCT
CGACTCCTCCATTGCCACGGCCTCGGGGGAAGTCAAGAAAACCCTGAAGT
CGATCCGCGGCCTCTCTTCCGCGTATTGGTTGGACGTCAAAAGCAAGGTC
CACCGCGCCGACGGCCCGGGTGATGATTTTTTTTCTATGGAAGGCATTCT
TGAGGATGCGGCTTCCAAGAACCCTCCCCCCGCCACTACTTTTATCGTCT
ACGACTTGCCCAATCGCGACTGCCACGCTCATGCCTCCAACGGCGAGATC
TGCTGCACCTACCTCCCTGACGGCCGCTGCGACTACCAGGCGGAGGGAGA
TTGCAAAGAGGGCATTCAGACGTACAAGAAGCAGTACATTGATCCCATTG
TCCAGGTCCTGAAGAAGTTCCAGGGGAAGGTTCCCATCGCCCTCGTCATC
GAGCCTGACTCTCTTCCCAATCTGGCCACTAACCTCGGAGACCCCCGCTG
CGGCTCTAAGGCTACCGTGAACGCCTACGAGCAAGGCGTGGCCTACGCCG
TCGAACAGATCGGAACCCATGCCCCGGACGTGATGATGTACCTCGACTCG
TCCCACGGCGGCTGGCTGGGCTGGGAGCACTCGCTCATGGACTACCTGGC
CATCCTCGAGAAGATCAACGTCGCCAAGCACGTCCGCGGCTTTGCCCTCA
ACACGGCCAATTATCAGCCCGTCGGGGAAATGTGCCCCTTCTGGGATTAT
TGCCTCGGGGGGAAGAACGTCAACGCCACGTGTTGCGCGGACCCGTGCAA
GCTTGCGCAGCAGTACAACGCAGGGAACAACGAGATGAACTTTGCCCTGA
TGATGCACAATAAGACCACCGGCATGTGGCCCTCCTTCGAGCCGCGCTTC
GTCATCGACACGGGCCGCAACGGGCAGTCCGGCATGCGCGAGTCTTGCTC
CAACTGGTGCAACATCCGCGGGGCTGGTATTGGGCACCGCCCCACCACCG
ACACAGGCTCGCCGTTGGTGGACGCCTTCCTGTGGCTCAAGACCCCCGGG
GAGTCGGACGGGTGCACGCAGATCTTGCCGGGCCCGGATAAGACGCAGTG
CCCTCGTTTTGACTCCATGTGCATGTCCCCCGACTCCATTGGCTCCCTTG
AGATGGATCCGCGCGCGCCCGAGGCCGGCCTTTGGTTCGACTACCAGATC
AAGGAGCTGGCCGCCAATGCCAACCTGGACGGTTAA

Synonyms

Publications