|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr23 | genome | chr23:35303..40036 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00100.3 vs.
Match: GAQ84675.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein [Klebsormidium nitens]) HSP 1 Score: 122.1 bits (305), Expect = 4.700e-24 Identity = 67/140 (47.86%), Postives = 93/140 (66.43%), Query Frame = 0
Query: 334 SSSSSSSSSSSSLQAGERFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLSAWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSITVLAIGPAPAALIDAHTGSLRLL 474
S S+++ ++ G+ KMVLVVR+DL M GKIAAQC HAA+G Y DL Q+Q LLS W++ G+P I++ D+ + L+ AS GLPTH++ DAGRT+V AGS TVLA+GP P +++DA TG L+L+
Sbjct: 89 SGPSNAALPATFASDGQEMKMVLVVRQDLKMGGGKIAAQCSHAAVGTYHDL-------QRQNRALLSKWEACGQPKIVVLCKDMREMGQLEGKASRAGLPTHVITDAGRTQVAAGSKTVLAVGPGPKSVVDAVTGHLKLM 221
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G00100.3 ID=NO23G00100.3|Name=NO23G00100.3|organism=Nannochloropsis oceanica|type=mRNA|length=2420bp ACAGCAGCATAGGTATCTGAAGCGTACGCATTAACAATTGAAGGAGTGTT GGCCACTGCTGCCAGAGAGCCGGGCATGAAAAGAAACAGAGCCAAAGTCA TTGTCACAGGCTTTGGCCCCTTTCGGGGGGTATCAGACAACCCTACCCAA CACTTGATTGAGGCGTTGCGGGAAGGCCAAGTGGCAGAAGGGGAAGGGGA GGTCAGTACGGAGGGAGGAGGGGTGGGTGGGAGAGGCCGTAGCTTAAATC GTCGAGGCACTTTGAGTGACGAATTTTGTCGTCGTAGGCAACTCCTTTAT TGATCGAGAATGGCAGTTCAAGCATGCAGAAGACACAAGACTGCCGCATT TACCTGCAGGACGCACCGCAACTAAGCTCAACAGACGCTCCAATGGGCCG ATTTGTCCCAATCAAACTATCATTGTAGAGGCCAGAGCAGGAGTAGTAAA TGTTATTGGTGTGACTGGGATAGTAATTGTTACATATGTTCCTGCGGAGG CTACCTCGGGGGAGGGAGGGTGGAGCGTTAGGGAGTCATGTATGTGCGCC GCCCTGCAAATGTGCTTGAGTGTGTGCCTGTGTGGGTGTGTGAAACGGTG CTTGGAATCGTATCTGGAATGGTGTGTGCACTGGGGCTTGAGTAACACAC CCGATTCCTCTTAAACCGACAAGAAGAGACGGAGAGGGTGTTTAGGATCG TACATAGCGGTGATATTCATCTCTTCCATTGGCCCCTTGCCTCTTCTCTC CATTCCCCCACGCCCTCCCTCCCTCCTTCCTCCCCCCCCTCGCCTCAGGT CACCCCTCTCCTCTGCCACGTTCTAGAAGTTTCCGCGGAGGGCGCCAAGG AGGCTCTGAAGACGCTGCATTGTCACACCGCGGGTAGGGACGTGACGAGG GAGGGAGAGAGGGAGGGAGGTAGGGAAGGAAAAGCAAGCAGGGGAGGGAA ACAAGGAGGGAAGGAGAAAGAGGAGGTAGGGAAAGAGGAGGGGAAGGAAT GAGTGATTTTTGCCCGGTGACCTTGACCCACCTTCCCAACGTACGCATGA CAGGCTCTGTTGGGGGAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG GAGAAGGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGGGCTGCTCATCTACCTGCACATGGGCG TGGATGCTGAGGCGAAAGAGCTCAAGCTGGAATGCCGTGCCTTCAACGAG GCCGACTTTCGCTGCCCCGATGAACGGCAGCACCAGCCTCGATCCCAGCC CATTCAGCCGTCTCTACTCGACACATCCCACGCTTACTACAGCACTCTGA ACCTCACGGCCTTGGCGGAGGTGCTGACGGAGGAAGGGAAGGAAGGAGGC CATGCCACTGAACGCTGGGGAAACGTGTCTCTCTCCCATGATGCGGGTCG GTTTGTCTGCAACTACACTTACTATCAATCGCTCCACTGCTGTCAGGGAA AGGAGAATAGGGCCTCCCTCTTTCTCCACGTGCCTCCCTTCGCCGTCATT CCATTCAATGCTCAGCTCGCCTTCCTGAAGCGCCTCCTCACCCTCCTCTC TCACACTCTCCCTAATCCCACTCACGCTGACACCCACCGTGCCCTGGCCC CCCCCATCAATATTCCTTCCTCTTTCCCTCCCGCGGTGCCTGACGGTGGT GAGAAGGAGGAGGAGGAACAGCAGCAGCAGCAGCGGGAGGAGGGCGATGG AGCACACGGAGAAGCAAGAGCAAGTCGAGGAGGAGAAGGAGAAGGAGGGA GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGAGGCAGTGATTTCAGTC ATGGTCGAGATGGGATTCGACAGAGGGCAGGTCTCGACCGCTCTTCCCTA CGTGTCTCGCACCACGCCCCTCCCTCCCTCCAGCCCCGCCTTCCAAGAAG CCCTCCTCCTCTGCCTCCTCTCCGGCGGTGCCCCCCCCTCATCCTCCTCG TCGTCGTCGTCGTCGTCCTCCTCCTCCTCGTCTCTCCAGGCGGGGGAGCG GTTCAAGATGGTGCTGGTCGTGAGGGAGGACCTAGGCATGAGCACTGGCA AAATAGCCGCGCAGTGCGTGCACGCTGCCCTTGGCGCCTACCAGGATCTC TCCACCACCTCCACCGACGTCCAGCAGCAAGGCCTCCTCCTCCTCTCCGC CTGGCAGTCCCAGGGCGAGCCCGTCATAATCCTCAGAGCCCCCGACCTCT CCTCTCTCCAGATCCTGCAGGCGGCTGCTTCCGAACAAGGCCTCCCTACC CACCTTGTGCGCGATGCGGGCCGCACAGAAGTCACTGCCGGGTCCATCAC CGTCCTTGCCATAGGCCCCGCTCCCGCCGCTCTAATAGATGCCCATACCG GCTCACTTCGCTTGTTGTGA back to topprotein sequence of NO23G00100.3 >NO23G00100.3-protein ID=NO23G00100.3-protein|Name=NO23G00100.3|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp MSDFCPVTLTHLPNVRMTGSVGGGKKKKKKKKKKEKEEDEEEEEEEEEEE EEEEEEEEGLLIYLHMGVDAEAKELKLECRAFNEADFRCPDERQHQPRSQ PIQPSLLDTSHAYYSTLNLTALAEVLTEEGKEGGHATERWGNVSLSHDAG RFVCNYTYYQSLHCCQGKENRASLFLHVPPFAVIPFNAQLAFLKRLLTLL SHTLPNPTHADTHRALAPPINIPSSFPPAVPDGGEKEEEEQQQQQREEGD GAHGEARASRGGEGEGGREGGREGGREEEAVISVMVEMGFDRGQVSTALP YVSRTTPLPPSSPAFQEALLLCLLSGGAPPSSSSSSSSSSSSSSSLQAGE RFKMVLVVREDLGMSTGKIAAQCVHAALGAYQDLSTTSTDVQQQGLLLLS AWQSQGEPVIILRAPDLSSLQILQAAASEQGLPTHLVRDAGRTEVTAGSI TVLAIGPAPAALIDAHTGSLRLL* back to topmRNA from alignment at chr23:35303..40036+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G00100.3 ID=NO23G00100.3|Name=NO23G00100.3|organism=Nannochloropsis oceanica|type=mRNA|length=4734bp|location=Sequence derived from alignment at chr23:35303..40036+ (Nannochloropsis oceanica) ACAGCAGCATAGGTATCTGAAGCGTACGCATTAACAATTGAAGGAGTGTT
GGCCACTGCTGCCAGAGAGCCGGGCATGAAAAGGTGAGCATGGCTATTTC
TGCCCAGATCCATCATCATCATCATCATCTCCCCTGTCCCTTCCCTCCCT
CCCTCGAACCGCACCCTTTAGAAACAGAGCCAAAGTCATTGTCACAGGCT
TTGGCCCCTTTCGGGGGGTATCAGACAACCCTACCCAACACTTGATTGAG
GCGTTGCGGGAAGGCCAAGTGGCAGAAGGGGAAGGGGAGGTCAGTACGGA
GGGAGGAGGGGTGGGTGGGAGAGGCCGTAGCTTAAATCGTCGAGGCACTT
TGAGTGACGAATTTTGTCGTCGTAGGCAACTCCTTTATTGATCGAGAATG
GCAGTTCAAGCATGCAGAAGACACAAGACTGCCGCATTTACCTGCAGGAC
GCACCGCAACTAAGCTCAACAGACGCTCCAATGGGCCGATTTGTCCCAAT
CAAACTATCATTGTAGAGGCCAGAGCAGGAGTAGTAAATGTTATTGGTGT
GACTGGGATAGTAATTGTTACATATGTTCCTGCGGAGGCTACCTCGGGGG
AGGGAGGGTGGAGCGTTAGGGAGTCATGTATGTGCGCCGCCCTGCAAATG
TGCTTGAGTGTGTGCCTGTGTGGGTGTGTGAAACGGTGCTTGGAATCGTA
TCTGGAATGGTGTGTGCACTGGGGCTTGAGTAACACACCCGATTCCTCTT
AAACCGACAAGAAGAGACGGAGAGGGTGTTTAGGATCGTACATAGCGGTG
ATATTCATCTCTTCCATTGGCCCCTTGCCTCTTCTCTCCATTCCCCCACG
CCCTCCCTCCCTCCTTCCTCCCCCCCCTCGCCTCAGGTCACCCCTCTCCT
CTGCCACGTTCTAGAAGTTTCCGCGGAGGGCGCCAAGGAGGCTCTGAAGA
CGCTGCATTGTCACACCGCGGGTAGGGACGTGACGAGGGAGGGAGAGAGG
GAGGGAGGTAGGGAAGGAAAAGCAAGCAGGGGAGGGAAACAAGGAGGGAA
GGAGAAAGAGGAGGTAGGGAAAGAGGAGGGGAAGGAATGAGTGATTTTTG
CCCGGTGACCTTGACCCACCTTCCCAACGTACGCATGACAGGCTCTGTTG
GGGGAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGGAG
GATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGCTGCTCATCTACCTGCACATGGGCGTGGATGCTGAGG
CGAAAGAGCTCAAGCTGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAAGGAAGGAGGGCTCCAGAAGGCAGTCACATGAATATAAGGGTG
CCCCACACGCCCAAATTCCATCTCTTATTATTATTATATATATATATATA
CTTCTTCTTGTATTCCTCGCATTACTCTTTCTACTTATTTCAACGACTAT
TATTATTACTTCTTTTTATATCGTTTATCCCCCCCCCCCTTTTCTGCCCG
TATATCTCCCGCCACAGGAATGCCGTGCCTTCAACGAGGCCGACTTTCGC
TGCCCCGATGAACGGCAGGTATGGATGTAACGCCTCCGGTGGCTTGGACG
GGAGGAGGGAAGGAGGGAGGGAGAGAGGGAGGGAGGGGGGAGAGAAAGGA
CATTGGACATTGACGACTCGAGCCACGATTTATATGGATGCCCCCCCCTC
CCCTTTTCTCCCTCCTTTTCCTCCCTCCTTCCTGTTGCACGACCCACCGG
CTGAATCGATCCGTTCTTTCCTAGCTCACATTGCTGCTCCCTCCCTCTTT
GCCTCCCTCCCTCCCTCCCTCCCCCCCTCCTCCCCAGCACCAGCCTCGAT
CCCAGCCCATTCAGCCGTCTCTACTCGACACATCCCACGCTTACTACAGC
ACTCTGAACCTCACGGCCTTGGCGGAGGTGAAAAGGGAGAGAGGGAGGGA
GGGGAAAGGCTTTTTGGTAGATGCATTCATTTTTTGTCCTTCTTTTACAA
ACCGACGATCGACATCATTCAACTATAACCATACGATAACCTCAAGGTGC
TGACGGAGGAAGGGAAGGAAGGAGGCCATGCCACTGAACGCTGGGGAAAC
GTGTCTCTCTCCCATGATGCGGGTATGTACTCCCCCTTCTTCCCTCCCTC
CCTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCTCCTCCCGTCAGTCTACA
AGCAGCCCTGGCGTTTCATTTTATTGCCGAACCCCTCGGCAATTAACCTC
CCTCCTTCCGTCCCTCTTTTTCTCCCTCCTTCCCTCCCTGTTCTAAGCAA
CAGGCTCCTGTCCTTTCCCACTGATCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCTATCCCTCCTTCCCTTCCTCCCTCCCTCCTTTCCTCTCT
CCCTCCCTCCCTCCCATCCTCCTTAAAGGTCGGTTTGTCTGCAACTACAC
TTACTATCAATCGCTCCACTGCTGTCAGGGAAAGGAGAATAGGGTGCGGC
GGGAGGGAGGGCGGGAGGGAGGGCTGGAGGGAGGGCGGGCGGGAGAGTAG
GAGTGGGTGTAATATCCATTTTCACCTGTTTTTCCCTCCCCCTCCTCCGT
TCCTCCCTCCCTCCCTTCCTATTTCAAGGCCTCCCTCTTTCTCCACGTGC
CTCCCTTCGCCGTCATTCCATTCAATGCTCAGCTCGCCTTCCTGAAGCGC
CTCCTCACCCTCCTCTCTCACACTCTCCCTAATCCCACTCACGCTGACAC
CCACCGGTACGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTTTTCTCCCTCCCTCCCTCCCTTCCTCCTGTCTGTCCCTTTACATT
TCTCCCGCCACCCCACCCCTCCCTCCCTCCCTCGCCCCCTCCCTCCCTCC
GTCAGTGCCCTGGCCCCCCCCATCAATATTCCTTCCTCTTTCCCTCCCGC
GGTGCCTGACGGTGGTGAGAAGGAGGAGGAGGAACAGCAGCAGCAGCAGC
GGGAGGAGGGCGATGGAGCACACGGAGAAGCAAGAGCAAGTCGAGGAGGA
GAAGGAGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGA
GGCAGTGATTTCAGTCATGGTCGAGATGGGATTCGACAGGTGCGGATCGG
GTAGGGAAGGAGGGAGGGAGGAGTGTTCGCATGCGGAGTAGGTGCTTCAC
GTATCATATTTTTCTCCCTCTTTCCCTCCCTCCGTCCCTCCCTCCTCAGA
GGGCAGGTCTCGACCGCTCTTCCCTACGTGTCTCGCACCACGCCCCTCCC
TCCCTCCAGCCCCGCCTTCCAAGAAGCCCTCCTCCTCTGCCTCCTCTCCG
GCGGTGCCCCCCCCTCATCCTCCTCGTCGTCGTCGTCGTCGTCCTCCTCC
TCCTCGTCTCTCCAGGCGGGGGAGCGGTTCAAGATGGTGCTGGTCGTGAG
GGAGGACCTAGGCATGAGCACTGGCAAAATAGCCGCGCAGTGCGTGCACG
GTACGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCCCCCTC
CTTCCTGCTCTTGTTTGCTTGGGACGAGGACGACACGATCAAAAGCTCGT
GTATGCTCGTCGGCGTCCAGTACCCGGATGGAAGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGCGAATGGTTTTGATCCAGCTGCCTTCTCTCTCTCACA
CACTCACACACTCGTGCATACACATGCATGCACACACACACACACTCACA
GCTGCCCTCTCTCACACACATACACATGCACTTAAACATGATCTCACGCA
TACACATGCAAGCACACACACACACACTCACAGCTGCCCTCTCTCACACA
CATACACATGCACTTAAACATGATCTCACGCATACACATGCATGCACACA
CACACACACTCACAGCTGCCCTCTCTCACACACATACACATGCACTTAAA
CATGATCTCACGCATGCACATGCATGCACACACACACACTCACAGCTGCC
CTTGGCGCCTACCAGGATCTCTCCACCACCTCCACCGACGTCCAGCAGCA
AGGTGTGCCTGCCCCTCCCTCTCTCCCTGCCTCCTACTGTTCCTCCCTCC
CTCATTCCCTCTCATATATTGTATATATTATTATTTCATATTCTCCATCG
CTTCTTCTCTCCCTCAAGTCTTCCCTCGTTAGGCGCCCTTGCTTCGTTTA
ATTTTGTATCACGACCAGCCCCATGTCCTCCTCACCCTCTGCTTCCGCTC
CTCCTCCTTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCACTCTCCCTCCCTCCCTCCCTCCAGGCCTCCTCCTC
CTCTCCGCCTGGCAGTCCCAGGGCGAGCCCGTCATAATCCTCAGAGCCCC
CGACCTCTCCTCTCTCCAGATCCTGCAGGCGGCTGCTTCCGAACAAGGTA
CGCCCCTCCCCTCCTCCCTCCCCCCCTTCCTCCTCCCTCCTCCCATCGTC
CCCTTAATCCGACCTCTCTCCCTCCCTCCCTAACTCCCACCCCCTCCTTC
CAGGCCTCCCTACCCACCTTGTGCGCGATGCGGGCCGCACAGAAGTCACT
GCCGGGTCCATCACCGTCCTTGCCATAGGCCCCGCTCCCGCCGCTCTAAT
AGATGCCCATACCGGCTCACTTCGCTTGTTGTGA back to topCoding sequence (CDS) from alignment at chr23:35303..40036+ >NO23G00100.3 ID=NO23G00100.3|Name=NO23G00100.3|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr23:35303..40036+ (Nannochloropsis oceanica) ATGAGTGATTTTTGCCCGGTGACCTTGACCCACCTTCCCAACGTACGCAT GACAGGCTCTGTTGGGGGAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AGGAGAAGGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGGGCTGCTCATCTACCTGCACATGGG CGTGGATGCTGAGGCGAAAGAGCTCAAGCTGGAATGCCGTGCCTTCAACG AGGCCGACTTTCGCTGCCCCGATGAACGGCAGCACCAGCCTCGATCCCAG CCCATTCAGCCGTCTCTACTCGACACATCCCACGCTTACTACAGCACTCT GAACCTCACGGCCTTGGCGGAGGTGCTGACGGAGGAAGGGAAGGAAGGAG GCCATGCCACTGAACGCTGGGGAAACGTGTCTCTCTCCCATGATGCGGGT CGGTTTGTCTGCAACTACACTTACTATCAATCGCTCCACTGCTGTCAGGG AAAGGAGAATAGGGCCTCCCTCTTTCTCCACGTGCCTCCCTTCGCCGTCA TTCCATTCAATGCTCAGCTCGCCTTCCTGAAGCGCCTCCTCACCCTCCTC TCTCACACTCTCCCTAATCCCACTCACGCTGACACCCACCGTGCCCTGGC CCCCCCCATCAATATTCCTTCCTCTTTCCCTCCCGCGGTGCCTGACGGTG GTGAGAAGGAGGAGGAGGAACAGCAGCAGCAGCAGCGGGAGGAGGGCGAT GGAGCACACGGAGAAGCAAGAGCAAGTCGAGGAGGAGAAGGAGAAGGAGG GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGAGGCAGTGATTTCAG TCATGGTCGAGATGGGATTCGACAGAGGGCAGGTCTCGACCGCTCTTCCC TACGTGTCTCGCACCACGCCCCTCCCTCCCTCCAGCCCCGCCTTCCAAGA AGCCCTCCTCCTCTGCCTCCTCTCCGGCGGTGCCCCCCCCTCATCCTCCT CGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCGTCTCTCCAGGCGGGGGAG CGGTTCAAGATGGTGCTGGTCGTGAGGGAGGACCTAGGCATGAGCACTGG CAAAATAGCCGCGCAGTGCGTGCACGCTGCCCTTGGCGCCTACCAGGATC TCTCCACCACCTCCACCGACGTCCAGCAGCAAGGCCTCCTCCTCCTCTCC GCCTGGCAGTCCCAGGGCGAGCCCGTCATAATCCTCAGAGCCCCCGACCT CTCCTCTCTCCAGATCCTGCAGGCGGCTGCTTCCGAACAAGGCCTCCCTA CCCACCTTGTGCGCGATGCGGGCCGCACAGAAGTCACTGCCGGGTCCATC ACCGTCCTTGCCATAGGCCCCGCTCCCGCCGCTCTAATAGATGCCCATAC CGGCTCACTTCGCTTGTTGTGA back to top
|