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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr22 | genome | chr22:580290..584157 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G01950.2 vs.
Match: XP_012201421.1 (hypothetical protein SPRG_07249 [Saprolegnia parasitica CBS 223.65]; KDO27972.1 hypothetical protein SPRG_07249 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 86.7 bits (213), Expect = 3.100e-13 Identity = 56/140 (40.00%), Postives = 84/140 (60.00%), Query Frame = 0
Query: 146 KKGKT-LEEEAAEALAREARGERKDEDEEEGEGGKEGERVIALQPLAHRRLDVGEDAPMLVKNAVPVPKDITDEKARLQYELSLREDDIDSSSNVYKMVPVEEFGAALLRGMGWAGPSADDVQIYQASARPQGLGLGANP 285
+KG T + AAEAL + R GE ++ VI P+A ++ VG+DAP+L +N +P +++T+E + ++++S+R DD+D S+ Y+ VP+EEFGAALLRGMGW+G + R Q LGLGA P
Sbjct: 70 EKGATEADSAAAEALLADIRSSAM------GESAEDSTMVI---PVA-KKPAVGDDAPILFRNKLPGLENLTNENDKFKHDISMRPDDMDIHSDAYEAVPIEEFGAALLRGMGWSGKDRVQPTGSKVQMRHQRLGLGATP 199
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G01950.2 ID=NO22G01950.2|Name=NO22G01950.2|organism=Nannochloropsis oceanica|type=mRNA|length=2348bp ATGTCAGACGGCACCAGCACTGCTGCGGAGCCTATGGATATGGCAGTAGA AGGCAGCAATGGAGACGGAGGACCACGCGCAGGCACAGGCCTTGTCCTAT CCCTGGGTGGCAAGAAAGGTGGAGCCAAAGGGGGAGTGGGAGGCGCCGGG GCACGCAATGGGGGTGCTGGAAGGCGAGGTAGTAACCACATGAAACGCGT TAGTGCTTTTGGAGGGCAGGCAGGGGACGAGGACGAGGACGAGGAAGGGG ACGGGCCGGAGCAAGGCGCCAAGTCACACTATATTCGCTCCCTCGACGAC AAGCACGGGAAGAAGGAGAAGGTGGAGAAGCCGCCCATGGTGATTGCAGT GCCAGTCCCTCGCTGGAATAGGAGGGAGGAAGAGGGGGCAAAGGAGGGCA GGAAGGAGGAGCATGGTGCACCCCCACCGCTGAAGAAAAAGGGTAAGACG TTGGAGGAAGAGGCAGCAGAGGCTTTGGCACGAGAAGCACGAGGAGAAAG GAAAGACGAGGACGAGGAGGAGGGGGAGGGAGGGAAGGAGGGAGAGCGGG TCATCGCATTGCAGCCTCTGGCCCATCGGCGATTGGATGTGGGGGAAGAC GCTCCCATGCTGGTGAAGAATGCTGTGCCTGTACCAAAAGACATCACCGA CGAGAAGGCCCGGCTCCAGTACGAGCTGTCCCTGCGCGAGGATGACATTG ACTCCTCCTCAAATGTCTATAAGATGGTACCGGTGGAAGAGTTCGGCGCT GCCCTCCTTCGAGGCATGGGCTGGGCTGGTCCCTCTGCTGATGACGTTCA GATATATCAAGCAAGTGCCCGACCACAGGGGCTGGGGTTGGGCGCAAACC CGGCAGCTCTCGACCTCGATCCTGAAGGGCACTGGAAGAGGAAGGGGGCC AAGAAGGGAGGGAGGAAGGGAGGGGGGGAGGGAGGGACTACGGCGACGGC GGCCCAGGAGGCCCTGGTCAAGGCGGCGGAGGAAAGGCTGAGGAAACAAG TATTGAAGGACGGGGACGTCGTTCGTCTGGCCAAGGGGGAATATGGCGGG AAACGGGCGCGGGTCACACGGGCGGCTGGCGTGGCCGGTCTGCACATGAT CGAGGTCTCTCTCGAAGACGTAGAGCGTCATCCTGCCTCTCTCCCTCCCT CCCTCCTTGTTCTCCGCATCAAGCAGACGGACTGCTTTCTCGTCCCGCCT TCGGAATTGCAGATGCGGCCGTTCCGGGGAGGGAGGGAGGGAGGGAGGGA GGGAGGGAGGGAGGGAGGGAGATCACGCTCTCGCTCTCCGGGGTCTGGGT CAAGGGCGAGGGCGAGGGATGGAGGGAGGGAGGGAGGGAGGGAGGGGAAG AAGAGGCGCAGTGCCAGCAGGAGTAGTGATGATGAGAGCAGCAGTAAGAG GAAGAGTAAGAAGGAGAAGAAGAAGAAGGAGAAGAAGAAGGGAACGAAGC GCTCTCGTTCGCGTTCTCCGTCGTCACTGCCTCGAGGGAGGGAGGAGGAG GAAGAGAAGGAGGAGAGGGAGGAAAAAAGAAGGGAAAGGAAGAGAGCTCA CCAGGAAGAAGAGGGACGAAAAGGGCGCGAAAAGGAGAAGGAAAAAAAGT CCAAGTCCTCCTCCTCCTCCTCCTACGCTGATGATCCTCGAGGCACTTCC TGGCTCCTCCCCCATATCAAGGTGCGCATTATAACCGAGCGACCCCTGGG AGGGAGGGAAGGAGGGAAGGAAAGAGAAAAAGCACGGAGCTTCTACCGCG CGAAGGGGGTGGTAGTGGATGTGCCACGACCCGGGGAGGCGACAGTCCAC TTGGACGAGGGCGGGAGGATTTTGGAAGGTAAGGAGGGATGGAGGGTAAG GAGGGATGGAGGGACGGAGGGAGGGGAGGCGAACAAGGGCAGTGATGTCT CTTTTCCACGCTCCACTTTACTTTTTCAAGTCCAAGACTCCGCACGCTCT TCCTCCCCTCCATCCTCACTTTTCCTCTTTTCCTCCTTCTTCAGGCGTTA AAGCCCGGCACCTTGAAACGGCTCTTCCACCCGTTGGGGGCATCGTGCTC CTTCTCCGCGGGCCTCATCGGTTACAGCGAGGGAAGCTTCTGGAGGTGGA GAGCGGGAGGGAGGAAGGAGTGGTCCAGCTGGTGGATGAGGACCTACAGG TGGTGCGGATGCCTTTGGACGATATGGCCGAATCTCGAAGGATTGACTGA AGGAGGGAGGGGGAAGGGAGGGAGAGAGAGGTGTACATCTAGAAGGACAC ACAAAGCAATAAGCAATGGAGTGATTTGAAAAATAGATGGAAGTAGGGAG GTGAAAATATCGTGCGCGCCGACCGACATCGTCATCTGCATTGCCTCA back to topprotein sequence of NO22G01950.2 >NO22G01950.2-protein ID=NO22G01950.2-protein|Name=NO22G01950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=667bp MSDGTSTAAEPMDMAVEGSNGDGGPRAGTGLVLSLGGKKGGAKGGVGGAG ARNGGAGRRGSNHMKRVSAFGGQAGDEDEDEEGDGPEQGAKSHYIRSLDD KHGKKEKVEKPPMVIAVPVPRWNRREEEGAKEGRKEEHGAPPPLKKKGKT LEEEAAEALAREARGERKDEDEEEGEGGKEGERVIALQPLAHRRLDVGED APMLVKNAVPVPKDITDEKARLQYELSLREDDIDSSSNVYKMVPVEEFGA ALLRGMGWAGPSADDVQIYQASARPQGLGLGANPAALDLDPEGHWKRKGA KKGGRKGGGEGGTTATAAQEALVKAAEERLRKQVLKDGDVVRLAKGEYGG KRARVTRAAGVAGLHMIEVSLEDVERHPASLPPSLLVLRIKQTDCFLVPP SELQMRPFRGGREGGREGGREGGRSRSRSPGSGSRARARDGGREGGREGK KRRSASRSSDDESSSKRKSKKEKKKKEKKKGTKRSRSRSPSSLPRGREEE EEKEEREEKRRERKRAHQEEEGRKGREKEKEKKSKSSSSSSYADDPRGTS WLLPHIKVRIITERPLGGREGGKEREKARSFYRAKGVVVDVPRPGEATVH LDEGGRILEGKEGWRVRRDGGTEGGEANKGSDVSFPRSTLLFQVQDSARS SSPPSSLFLFSSFFRR* back to topmRNA from alignment at chr22:580290..584157- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G01950.2 ID=NO22G01950.2|Name=NO22G01950.2|organism=Nannochloropsis oceanica|type=mRNA|length=3868bp|location=Sequence derived from alignment at chr22:580290..584157- (Nannochloropsis oceanica) ATGTCAGACGGCACCAGCACTGCTGCGGAGCCTATGGATATGGCAGTAGA
AGGCAGCAATGGAGACGGAGGACCACGCGCAGGTCTGTGTCCACACGTGT
GATTCTCCCTCCCTCTCTCACTCCATCCCTCCCTCCTCCTTTCCTTCCTC
CCCTTCTTCCTCCCTCGCTCATCTCACTACACGTGCATCTGACCCACGTA
CATAACACAGGCACAGGCCTTGTCCTATCCCTGGGTGGCAAGAAAGGTGG
AGCCAAAGGGGGAGTGGGAGGCGCCGGGGCACGCAATGGGGGTGCTGGAA
GGCGAGGTAGTAACCACATGAAACGCGTTAGTGCTTTTGGAGGGCAGGCA
GGGGTAGGTACGGAGGGAGGGACGGAGGGAGGGAGGGATGGAAAGAGGAA
AGGAGGGATGCACACACATACACACACACACACACACACATACACACACA
CACACACACACAAACACACACACGCACACACACGTGTACACACACGTACA
CACGTGTACACACACGTACACACAAATACACACACACACACCCCATTCAT
CACTCCCGACAGGACGAGGACGAGGACGAGGAAGGGGACGGGCCGGAGCA
AGGCGCCAAGTCACACTATATTCGCTCCCTCGACGACAAGCACGGGAAGA
AGGAGAAGGTGGAGAAGCCGCCCATGGTGATTGCAGTGCCAGTCCCTCGC
TGGAATAGGAGGGAGGAAGAGGGGGCAAAGGAGGGCAGGAAGGAGGAGCA
TGGTGCACCCCCACCGCTGAAGAAAAAGGGTAAGACGTTGGAGGAAGAGG
CAGCAGAGGCTTTGGCACGAGAAGCACGAGGAGAAAGGAAAGACGAGGAC
GAGGAGGAGGGGGAGGGAGGGAAGGAGGGAGAGCGGGTCATCGCATTGCA
GCCTCTGGCCCATCGGCGATTGGATGTGGGGGAAGACGCTCCCATGCTGG
TGAAGAATGCTGTGCCTGTACCAAAAGACATCACCGACGAGAAGGTGAGT
CCCTCGCTCCATCTCTCCCTCCCTCCCTCCCTCCCTCCCTGGCCCATGGC
CATGATCATGGACAACGCATGGTTGCAGAGAGGGAGGGAAGGAGGGAGGG
AGGGAGAGAAGGAGGGAGGGAGGAAAGGGTTCTAGTACTTCGTTTACTAT
CTGCTCTGCTTTTGCTCAATTTCTTCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCATCCTCCCTTCCTTCCTGGTAGGCCCGGCTCCAGTACGAGC
TGTCCCTGCGCGAGGATGACATTGACTCCTCCTCAAATGTCTATAAGGTA
AGAGAGGGAGGGAGGGAGGGAGGGAGGAAAGGAGGGAGAGGAAGTGACAT
TGTGAAGCTTGGGCTCCGTGGGTGTCAACTCCTCCACGCCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTCATCAGATGGTACCGGTGGAAGAGTTCGGC
GCTGCCCTCCTTCGAGGCATGGGCTGGGCTGGTCCCTCTGCTGATGACGT
TCAGATATATCAAGCAAGTGCCCGACCACAGGGGTAAGCCAGCCAGCCCT
CCCTCCCTCCCTCCCTCCCTCCCTTCCTTTATTCTCGCCTCACGGCAGTC
CTTTCTCTCGTGCAAGCACACCGCTCCTTCTTTTCTTTCTTTTCCTCCTT
CCCTCTTTTTCCTCCTACCCACCCTCCCATTGGCCTTCAAGTCCTAATTT
TCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCAGGCTGGGGTTGGGCGCAAACCCGGCAGCTCTCGA
CCTCGATCCTGAAGGGCACTGGAAGAGGAAGGGGGCCAAGAAGGGAGGGA
GGAAGGGAGGGGGGGAGGGAGGGACTACGGCGACGGCGGCCCAGGAGGCC
CTGGTCAAGGCGGCGGAGGAAAGGCTGAGGAAACAAGTATTGAAGGTAGG
GGGTTAGGGAGCGAGGGAGGGAAGGAGAGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTGGGTAGGTCGTCAGAAG
GACAAGACAAGACGGTGTCCAACAGACAGATTCACCCCTCCCTCCCTCCC
TCCCCCGACAGGACGGGGACGTCGTTCGTCTGGCCAAGGGGGAATATGGC
GGGAAACGGGCGCGGGTCACACGGGCGGCTGGTACGGAGGGAAGGAAGGG
GGGAGGGAGGGAGGGAGGGAAGAAAGTGGGTTGGGGGGGGGGTAGAAGAT
GAACATCTTTGTGTACGGATGGATGGCGGCCGGAGGGAGGGAGGGAGGGA
GGCGAGGAGGGAAGGAGGGAGAGAGGGAGGGGGGAAGGGAGGAATCAGCC
TTGCACATCAGGAGGAGAGCTCTGAGCCTCAAATGCCCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCCCCTCCAGGCGTGGCC
GGTCTGCACATGATCGAGGTCTCTCTCGAAGACGTAGAGCGTCATCCTGC
CTCTCTCCCTCCCTCCCTCCTTGTTCTCCGCATCAAGCAGACGGACTGCT
TTCTCGTCCCGCCTTCGGAATTGCAGATGCGGCCGTTCCGGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGATCACGCTCTCGCTC
TCCGGGGTCTGGGTCAAGGGCGAGGGCGAGGGATGGAGGGAGGGAGGGAG
GGAGGGAGGGGAAGAAGAGGCGCAGTGCCAGCAGGAGTAGTGATGATGAG
AGCAGCAGTAAGAGGAAGAGTAAGAAGGAGAAGAAGAAGAAGGAGAAGAA
GAAGGGAACGAAGCGCTCTCGTTCGCGTTCTCCGTCGTCACTGCCTCGAG
GGAGGGAGGAGGAGGAAGAGAAGGAGGAGAGGGAGGAAAAAAGAAGGGAA
AGGAAGAGAGCTCACCAGGAAGAAGAGGGACGAAAAGGGCGCGAAAAGGA
GAAGGAAAAAAAGTCCAAGTCCTCCTCCTCCTCCTCCTACGCTGATGATC
CTCGAGGTGCGTAGTTCCAAACCTCCCTCCTTCCCATCCTCCCTTCCTTC
CTCCCTTTCCTCTCTTCCTTCCCTCCGCCAGCCTTCCATCACACGTGAAG
AATCCTGACTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CTCTCCCCTTAGGCACTTCCTGGCTCCTCCCCCATATCAAGGTGCGCATT
ATAACCGAGCGACCCCTGGGAGGGAGGGAAGGAGGGAAGGAAAGAGAAAA
AGCACGGAGCTTCTACCGCGCGAAGGGGGTGGTAGTGGATGTGCCACGAC
CCGGGGAGGCGACAGTCCACTTGGACGAGGGCGGGAGGATTTTGGAAGGT
AAGGAGGGATGGAGGGTAAGGAGGGATGGAGGGACGGAGGGAGGGGAGGC
GAACAAGGGCAGTGATGTCTCTTTTCCACGCTCCACTTTACTTTTTCAAG
TCCAAGACTCCGCACGCTCTTCCTCCCCTCCATCCTCACTTTTCCTCTTT
TCCTCCTTCTTCAGGCGTTAAAGCCCGGCACCTTGAAACGGCTCTTCCAC
CCGTTGGGGGCATCGTGCTCCTTCTCCGCGGGCCTCATCGGTTACAGCGA
GGGAAGCTTCTGGAGGTGGAGAGCGGGAGGGAGGAAGGAGTGGTCCAGCT
GGTGGATGAGGACCTACAGGTGGTGCGGATGCCTTTGGACGATATGGCCG
AATCTCGAAGGATTGACTGAAGGAGGGAGGGGGAAGGGAGGGAGAGAGAG
GTGTACATCTAGAAGGACACACAAAGCAATAAGCAATGGAGTGATTTGAA
AAATAGATGGAAGTAGGGAGGTGAAAATATCGTGCGCGCCGACCGACATC
GTCATCTGCATTGCCTCA back to topCoding sequence (CDS) from alignment at chr22:580290..584157- >NO22G01950.2 ID=NO22G01950.2|Name=NO22G01950.2|organism=Nannochloropsis oceanica|type=CDS|length=2001bp|location=Sequence derived from alignment at chr22:580290..584157- (Nannochloropsis oceanica) ATGTCAGACGGCACCAGCACTGCTGCGGAGCCTATGGATATGGCAGTAGA AGGCAGCAATGGAGACGGAGGACCACGCGCAGGCACAGGCCTTGTCCTAT CCCTGGGTGGCAAGAAAGGTGGAGCCAAAGGGGGAGTGGGAGGCGCCGGG GCACGCAATGGGGGTGCTGGAAGGCGAGGTAGTAACCACATGAAACGCGT TAGTGCTTTTGGAGGGCAGGCAGGGGACGAGGACGAGGACGAGGAAGGGG ACGGGCCGGAGCAAGGCGCCAAGTCACACTATATTCGCTCCCTCGACGAC AAGCACGGGAAGAAGGAGAAGGTGGAGAAGCCGCCCATGGTGATTGCAGT GCCAGTCCCTCGCTGGAATAGGAGGGAGGAAGAGGGGGCAAAGGAGGGCA GGAAGGAGGAGCATGGTGCACCCCCACCGCTGAAGAAAAAGGGTAAGACG TTGGAGGAAGAGGCAGCAGAGGCTTTGGCACGAGAAGCACGAGGAGAAAG GAAAGACGAGGACGAGGAGGAGGGGGAGGGAGGGAAGGAGGGAGAGCGGG TCATCGCATTGCAGCCTCTGGCCCATCGGCGATTGGATGTGGGGGAAGAC GCTCCCATGCTGGTGAAGAATGCTGTGCCTGTACCAAAAGACATCACCGA CGAGAAGGCCCGGCTCCAGTACGAGCTGTCCCTGCGCGAGGATGACATTG ACTCCTCCTCAAATGTCTATAAGATGGTACCGGTGGAAGAGTTCGGCGCT GCCCTCCTTCGAGGCATGGGCTGGGCTGGTCCCTCTGCTGATGACGTTCA GATATATCAAGCAAGTGCCCGACCACAGGGGCTGGGGTTGGGCGCAAACC CGGCAGCTCTCGACCTCGATCCTGAAGGGCACTGGAAGAGGAAGGGGGCC AAGAAGGGAGGGAGGAAGGGAGGGGGGGAGGGAGGGACTACGGCGACGGC GGCCCAGGAGGCCCTGGTCAAGGCGGCGGAGGAAAGGCTGAGGAAACAAG TATTGAAGGACGGGGACGTCGTTCGTCTGGCCAAGGGGGAATATGGCGGG AAACGGGCGCGGGTCACACGGGCGGCTGGCGTGGCCGGTCTGCACATGAT CGAGGTCTCTCTCGAAGACGTAGAGCGTCATCCTGCCTCTCTCCCTCCCT CCCTCCTTGTTCTCCGCATCAAGCAGACGGACTGCTTTCTCGTCCCGCCT TCGGAATTGCAGATGCGGCCGTTCCGGGGAGGGAGGGAGGGAGGGAGGGA GGGAGGGAGGGAGGGAGGGAGATCACGCTCTCGCTCTCCGGGGTCTGGGT CAAGGGCGAGGGCGAGGGATGGAGGGAGGGAGGGAGGGAGGGAGGGGAAG AAGAGGCGCAGTGCCAGCAGGAGTAGTGATGATGAGAGCAGCAGTAAGAG GAAGAGTAAGAAGGAGAAGAAGAAGAAGGAGAAGAAGAAGGGAACGAAGC GCTCTCGTTCGCGTTCTCCGTCGTCACTGCCTCGAGGGAGGGAGGAGGAG GAAGAGAAGGAGGAGAGGGAGGAAAAAAGAAGGGAAAGGAAGAGAGCTCA CCAGGAAGAAGAGGGACGAAAAGGGCGCGAAAAGGAGAAGGAAAAAAAGT CCAAGTCCTCCTCCTCCTCCTCCTACGCTGATGATCCTCGAGGCACTTCC TGGCTCCTCCCCCATATCAAGGTGCGCATTATAACCGAGCGACCCCTGGG AGGGAGGGAAGGAGGGAAGGAAAGAGAAAAAGCACGGAGCTTCTACCGCG CGAAGGGGGTGGTAGTGGATGTGCCACGACCCGGGGAGGCGACAGTCCAC TTGGACGAGGGCGGGAGGATTTTGGAAGGTAAGGAGGGATGGAGGGTAAG GAGGGATGGAGGGACGGAGGGAGGGGAGGCGAACAAGGGCAGTGATGTCT CTTTTCCACGCTCCACTTTACTTTTTCAAGTCCAAGACTCCGCACGCTCT TCCTCCCCTCCATCCTCACTTTTCCTCTTTTCCTCCTTCTTCAGGCGTTA A back to top
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