NO22G01850.1, NO22G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01850.1
Unique NameNO22G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1901
Alignment locationchr22:554714..556876 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:554714..556876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO22G01850.1 vs.
Match: EWM20405.1 (hypothetical protein Naga_101522g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 8.600e-39
Identity = 105/209 (50.24%), Postives = 131/209 (62.68%), Query Frame = 0
Query:   75 SSPSSSNGTSTTHPSSSSPLSSSLLPADPLLRRVHIGKCLQLLYPQIFSAGVLPTSSLPLTRVREAIFHGIQAVKYSSLEAFRTEVRSLITTHACPKDCATALLNRVDHVVATARDVEMLYSHGQGLP-----------------------QARDDLFRCLGDYPSLREMERR--KREGGRVGGRRRVAGGNGKGGREEEEEEGEETSE 259
            + P +S+  +   PS+++ L +  LP D LLRRVH+GKCLQLLYP+IF+AGVLP +S PL R+REA+FHGIQ V+Y+SL AFR EV SL+T HACP      LL+R+D V+ATA  VE LYSH QGLP                       QARD+LF+ LG +PSLR    R  K+  GR G         G+GG+EEEEEE EE  E
Sbjct:   63 TKPGASSPRARASPSATTGLKALSLPDDALLRRVHVGKCLQLLYPRIFAAGVLPPASPPLNRIREAVFHGIQTVRYTSLAAFREEVVSLMTLHACPDAVGAVLLSRIDTVLATAESVEALYSHQQGLPRGLSRRGGARGGNGRGGGLYTYQQARDELFKTLGSFPSLRRKRGRAEKKGCGREG---------GEGGKEEEEEEEEEEEE 262          
The following BLAST results are available for this feature:
BLAST of NO22G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20405.18.600e-3950.24hypothetical protein Naga_101522g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01850NO22G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01850.1NO22G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01850.1.cds1NO22G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01850.1.cds2NO22G01850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01850.1.cds3NO22G01850.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01850.1.cds4NO22G01850.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01850.1 ID=NO22G01850.1|Name=NO22G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1901bp
ATGGAAATCATTCCGCCGACCACTTGCAAAGGTTTCATTATAAAGCTCAC
CATTACATCCTACCACTTTGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCACCACAACTCGCCATCTGCGACAAGGAATGGATGG
TCACGAGGAGCCCCAGCGCGAGAAGCATCAAACACAGGCGTGATTTCGGC
CGCAGTGGTGGACTTGACAGGGTCCTCCCCCTCCTCCAGCAACGGCACCA
GCACGACGCACCCCTCCTCCTCCTCCCCTTTATCCTCTTCCCTCCTCCCT
GCCGACCCCCTCCTCCGGCGTGTCCACATTGGCAAGTGCCTTCAGCTCCT
ATACCCCCAAATCTTTTCCGCGGGCGTCTTACCCACCTCCTCCCTTCCCC
TCACCCGTGTACGAGAAGCGATTTTCCACGGTATTCAAGCAGTCAAATAC
TCTTCTCTGGAGGCCTTTCGTACCGAGGTGCGGTCGCTTATCACCACCCA
TGCCTGCCCGAAGGACTGTGCGACTGCTTTACTAAATCGTGTCGACCACG
TGGTGGCCACTGCCAGGGACGTGGAGATGCTCTATTCGCACGGGCAGGGG
CTGCCCCAGGCGAGAGACGATTTGTTCCGATGTCTGGGCGATTATCCAAG
TTTGAGGGAGATGGAGAGGAGGAAAAGGGAGGGCGGGCGGGTGGGAGGGA
GGAGGAGAGTGGCAGGGGGGAATGGAAAAGGAGGCCGAGAAGAGGAGGAG
GAGGAGGGGGAGGAAACGAGTGAAGGAGAGCAAAAAGGGCAGTCAAATAA
CAACGCGGCTGCGGTTGTCACAGTGAAGTGTGGCGGTCGGCCCCCTCCCT
CATCCTCCTCCTCCAAGAAACGAAGGAAAGGGGAGTCAGGACGGTACGGT
CAGGGGGCAGGGAAGGCACTCCCTCTTTCGGCTCCACACACCGGACCTAC
GAGCGGAGGAGGGGAGGGGGGACGGACAAAGAGGAAGGACGGTGAGTCGG
TTCTTTTGTCTGCGGCGGAACGGTATGCAGAGTGGAAGTCACAGGTGGTT
ATGGAGGAGGAGGAGGAGGAGTGGGAGGAAAAGGGGGAGGGAGGGAGGGA
GAGGAAGAGGAGAAGGAGTGCGGAGGAGGGGACAGGGATGCATTCATCGG
ATTGCTCGTCGTTGTCGTCGTCGTCGTCATCGTCGGAGGAGGAGGAGGAG
GAGGAGGAGGACGACGAGCCCCTCCTTCGCCTCTTCCCCTTTCCCCCCCC
CCCTCTCCCCCTCGTCCTCCTCTCTCAACCCCCACCCACCTTCGCCATCG
GTCTCAATCATTCCTCCTCCTCTGACCCCTCCCTCCCTCCCTCCCTCCCT
CCTTACTTCACCTTCCGCGTCGGCCTTCCCCGCTGCTGCCGTCGAGCGGT
AAAACGTCTACAGACCTCTTGCTCGTTGGTGGTGGAGCTGAGGTATGCAG
GGAAAGAGGGCGGGAGGGAGGGAGGGGAGGGAGGGATCGAGCAGTCTTAT
CTAACGTTGCTTGAGGATCCCGTGCTGAGGCCGGGAGAGAGGGAATGGCT
TGTCAAGGCCCGCATCACGGCGTTGAGTCGGCAACATACCCGGAGGGCGT
TTTCGTTGTGGGTGGATGTTAGTGCGTTTGAACAGCGGGAGCATGGCCTG
TGTGTGTCGGGGGTGCAGACGTCGGCGGTGCGGACGGTGAAGGTGGGGAA
GGGGGGAGGAGGAAAGGAGTCGGGGGGGAAGGAGGGGGCGAAGGCGGGAA
GAGAAGGGATGCCGTTGAAGAGGCGATCGATCGTCTTGACGCGAGGGCAA
GTGAAGGATAAGAAGGCGGGCTAGAGAGAGAGAAGAGGGAGGGAAGGAGG
GAGAGAGGGAGGAGGCAGAGGCGGAGAAGGAGGAGAAGGAGGAGGAGGAG
G
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protein sequence of NO22G01850.1

>NO22G01850.1-protein ID=NO22G01850.1-protein|Name=NO22G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp
MEIIPPTTCKGFIIKLTITSYHFVQQQQQQQQQQQQQQHHNSPSATRNGW
SRGAPAREASNTGVISAAVVDLTGSSPSSSNGTSTTHPSSSSPLSSSLLP
ADPLLRRVHIGKCLQLLYPQIFSAGVLPTSSLPLTRVREAIFHGIQAVKY
SSLEAFRTEVRSLITTHACPKDCATALLNRVDHVVATARDVEMLYSHGQG
LPQARDDLFRCLGDYPSLREMERRKREGGRVGGRRRVAGGNGKGGREEEE
EEGEETSEGEQKGQSNNNAAAVVTVKCGGRPPPSSSSSKKRRKGESGRYG
QGAGKALPLSAPHTGPTSGGGEGGRTKRKDGESVLLSAAERYAEWKSQVV
MEEEEEEWEEKGEGGRERKRRRSAEEGTGMHSSDCSSLSSSSSSSEEEEE
EEEDDEPLLRLFPFPPPPLPLVLLSQPPPTFAIGLNHSSSSDPSLPPSLP
PYFTFRVGLPRCCRRAVKRLQTSCSLVVELRYAGKEGGREGGEGGIEQSY
LTLLEDPVLRPGEREWLVKARITALSRQHTRRAFSLWVDVSAFEQREHGL
CVSGVQTSAVRTVKVGKGGGGKESGGKEGAKAGREGMPLKRRSIVLTRGQ
VKDKKAG*
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mRNA from alignment at chr22:554714..556876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01850.1 ID=NO22G01850.1|Name=NO22G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp|location=Sequence derived from alignment at chr22:554714..556876+ (Nannochloropsis oceanica)
ATGGAAATCATTCCGCCGACCACTTGCAAAGGTTTCATTATAAAGCTCAC CATTACATCCTACCACTTTGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGTAACAGCAGTTGCGCCATAAGGCAGGACCAATC ACCTCCTTGATCCTTTTCTTCCCTCCTGTGATGAACGAAGCAATTTATTC GACACGACTCCGACCCGGCACCAGCCACAACTCGCCATCTGCGACAAGGA ATGGATGGTCACGAGGAGCCCCAGCGCGAGAAGCATCAAACACAGGCGTG ATTTCGGCCGCAGTGGTGGACTTGACAGGGTCCTCCCCCTCCTCCAGCAA CGGCACCAGCACGACGCACCCCTCCTCCTCCTCCCCTTTATCCTCTTCCC TCCTCCCTGCCGACCCCCTCCTCCGGCGTGTCCACATTGGCAAGTGCCTT CAGCTCCTATACCCCCAAATCTTTTCCGCGGGCGTCTTACCCACCTCCTC CCTTCCCCTCACCCGTGTACGAGAAGCGATTTTCCACGGTATTCAAGCAG TCAAATACTCTTCTCTGGAGGCCTTTCGTACCGAGGTGCGGTCGCTTATC ACCACCCATGCCTGCCCGAAGGACTGTGCGACTGCTTTACTAAATCGTGT CGACCACGTGGTGGCCACTGCCAGGGACGTGGAGATGCTCTATTCGCACG GGCAGGGGCTGCCCCAGGTGCCGAGCAGGAGGGGGGGGCCGAGGGGGAGG GAGGGAAGGGGGGGGGATTGTACACTTACCATCAGGCGAGAGACGATTTG TTCCGATGTCTGGGCGATTATCCAAGTTTGAGGGAGATGGAGAGGAGGAA AAGGGAGGGCGGGCGGGTGGGAGGGAGGAGGAGAGTGGCAGGGGGGAATG GAAAAGGAGGCCGAGAAGAGGAGGAGGAGGAGGGGGAGGAAACGAGTGAA GGAGAGCAAAAAGGGCAGTCAAATAACAACGCGGCTGCGGTTGTCACAGT GAAGTGTGGCGGTCGGCCCCCTCCCTCATCCTCCTCCTCCAAGAAACGAA GGAAAGGGGAGTCAGGACGGTACGGTCAGGGGGCAGGGAAGGCACTCCCT CTTTCGGCTCCACACACCGGACCTACGAGCGGAGGAGGGGAGGGGGGACG GACAAAGAGGAAGGACGGTGAGTCGGTTCTTTTGTCTGCGGCGGAACGGT ATGCAGAGTGGAAGTCACAGGTGGTTATGGAGGAGGAGGAGGAGGAGTGG GAGGAAAAGGGGGAGGGAGGGAGGGAGAGGAAGAGGAGAAGGAGTGCGGA GGAGGGGACAGGGATGCATTCATCGGATTGCTCGTCGTTGTCGTCGTCGT CGTCATCGTCGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGAGGTGGAG AAGAGAAAACCTTGTAGTATCACCCGATCTCGTCGGCGCAACCGTCGCTC CCTCCCTCCTTCCCACCATTGCTCCTCCAGCCCCTCCTTCGCCTCTTCCC CTTTCCCCCCCCCCCTCTCCCCCTCGTCCTCCTCTCTCAACCCCCACCCA CCTTCGCCATCGGTCTCAATCATTCCTCCTCCTCTGACCCCTCCCTCCCT CCCTCCCTCCCTCCTTACTTCACCTTCCGCGTCGGCCTTCCCCGCTGCTG CCGTCGAGCGGTAAAACGTCTACAGACCTCTTGCTCGTTGGTGGTGGAGC TGAGGTATGCAGGGAAAGAGGGCGGGAGGGAGGGAGGGGAGGGAGGGATC GAGCAGTCTTATCTAACGTTGCTTGAGGATCCCGTGCTGAGGCCGGGAGA GAGGGAATGGCTTGTCAAGGCCCGCATCACGGCGTTGAGTCGGCAACATA CCCGGAGGGCGTTTTCGTTGTGGGTGGATGTTAGTGCGTTTGAACAGCGG GAGCATGGCCTGTGTGTGTCGGGGGTGCAGACGTCGGCGGTGCGGACGGT GAAGGTGGGGAAGGGGGGAGGAGGAAAGGAGTCGGGGGGGAAGGAGGGGG CGAAGGCGGGAAGAGAAGGGATGCCGTTGAAGAGGCGATCGATCGTCTTG ACGCGAGGGCAAGTGAAGGATAAGAAGGCGGGCTAGAGAGAGAGAAGAGG GAGGGAAGGAGGGAGAGAGGGAGGAGGCAGAGGCGGAGAAGGAGGAGAAG GAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at chr22:554714..556876+

>NO22G01850.1 ID=NO22G01850.1|Name=NO22G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at chr22:554714..556876+ (Nannochloropsis oceanica)
ATGGAAATCATTCCGCCGACCACTTGCAAAGGTTTCATTATAAAGCTCAC
CATTACATCCTACCACTTTGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCACCACAACTCGCCATCTGCGACAAGGAATGGATGG
TCACGAGGAGCCCCAGCGCGAGAAGCATCAAACACAGGCGTGATTTCGGC
CGCAGTGGTGGACTTGACAGGGTCCTCCCCCTCCTCCAGCAACGGCACCA
GCACGACGCACCCCTCCTCCTCCTCCCCTTTATCCTCTTCCCTCCTCCCT
GCCGACCCCCTCCTCCGGCGTGTCCACATTGGCAAGTGCCTTCAGCTCCT
ATACCCCCAAATCTTTTCCGCGGGCGTCTTACCCACCTCCTCCCTTCCCC
TCACCCGTGTACGAGAAGCGATTTTCCACGGTATTCAAGCAGTCAAATAC
TCTTCTCTGGAGGCCTTTCGTACCGAGGTGCGGTCGCTTATCACCACCCA
TGCCTGCCCGAAGGACTGTGCGACTGCTTTACTAAATCGTGTCGACCACG
TGGTGGCCACTGCCAGGGACGTGGAGATGCTCTATTCGCACGGGCAGGGG
CTGCCCCAGGCGAGAGACGATTTGTTCCGATGTCTGGGCGATTATCCAAG
TTTGAGGGAGATGGAGAGGAGGAAAAGGGAGGGCGGGCGGGTGGGAGGGA
GGAGGAGAGTGGCAGGGGGGAATGGAAAAGGAGGCCGAGAAGAGGAGGAG
GAGGAGGGGGAGGAAACGAGTGAAGGAGAGCAAAAAGGGCAGTCAAATAA
CAACGCGGCTGCGGTTGTCACAGTGAAGTGTGGCGGTCGGCCCCCTCCCT
CATCCTCCTCCTCCAAGAAACGAAGGAAAGGGGAGTCAGGACGGTACGGT
CAGGGGGCAGGGAAGGCACTCCCTCTTTCGGCTCCACACACCGGACCTAC
GAGCGGAGGAGGGGAGGGGGGACGGACAAAGAGGAAGGACGGTGAGTCGG
TTCTTTTGTCTGCGGCGGAACGGTATGCAGAGTGGAAGTCACAGGTGGTT
ATGGAGGAGGAGGAGGAGGAGTGGGAGGAAAAGGGGGAGGGAGGGAGGGA
GAGGAAGAGGAGAAGGAGTGCGGAGGAGGGGACAGGGATGCATTCATCGG
ATTGCTCGTCGTTGTCGTCGTCGTCGTCATCGTCGGAGGAGGAGGAGGAG
GAGGAGGAGGACGACGAGCCCCTCCTTCGCCTCTTCCCCTTTCCCCCCCC
CCCTCTCCCCCTCGTCCTCCTCTCTCAACCCCCACCCACCTTCGCCATCG
GTCTCAATCATTCCTCCTCCTCTGACCCCTCCCTCCCTCCCTCCCTCCCT
CCTTACTTCACCTTCCGCGTCGGCCTTCCCCGCTGCTGCCGTCGAGCGGT
AAAACGTCTACAGACCTCTTGCTCGTTGGTGGTGGAGCTGAGGTATGCAG
GGAAAGAGGGCGGGAGGGAGGGAGGGGAGGGAGGGATCGAGCAGTCTTAT
CTAACGTTGCTTGAGGATCCCGTGCTGAGGCCGGGAGAGAGGGAATGGCT
TGTCAAGGCCCGCATCACGGCGTTGAGTCGGCAACATACCCGGAGGGCGT
TTTCGTTGTGGGTGGATGTTAGTGCGTTTGAACAGCGGGAGCATGGCCTG
TGTGTGTCGGGGGTGCAGACGTCGGCGGTGCGGACGGTGAAGGTGGGGAA
GGGGGGAGGAGGAAAGGAGTCGGGGGGGAAGGAGGGGGCGAAGGCGGGAA
GAGAAGGGATGCCGTTGAAGAGGCGATCGATCGTCTTGACGCGAGGGCAA
GTGAAGGATAAGAAGGCGGGCTAG
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Synonyms
Publications