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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr22 | genome | chr22:554714..556876 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G01850.1 vs.
Match: EWM20405.1 (hypothetical protein Naga_101522g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 171.4 bits (433), Expect = 8.600e-39 Identity = 105/209 (50.24%), Postives = 131/209 (62.68%), Query Frame = 0
Query: 75 SSPSSSNGTSTTHPSSSSPLSSSLLPADPLLRRVHIGKCLQLLYPQIFSAGVLPTSSLPLTRVREAIFHGIQAVKYSSLEAFRTEVRSLITTHACPKDCATALLNRVDHVVATARDVEMLYSHGQGLP-----------------------QARDDLFRCLGDYPSLREMERR--KREGGRVGGRRRVAGGNGKGGREEEEEEGEETSE 259
+ P +S+ + PS+++ L + LP D LLRRVH+GKCLQLLYP+IF+AGVLP +S PL R+REA+FHGIQ V+Y+SL AFR EV SL+T HACP LL+R+D V+ATA VE LYSH QGLP QARD+LF+ LG +PSLR R K+ GR G G+GG+EEEEEE EE E
Sbjct: 63 TKPGASSPRARASPSATTGLKALSLPDDALLRRVHVGKCLQLLYPRIFAAGVLPPASPPLNRIREAVFHGIQTVRYTSLAAFREEVVSLMTLHACPDAVGAVLLSRIDTVLATAESVEALYSHQQGLPRGLSRRGGARGGNGRGGGLYTYQQARDELFKTLGSFPSLRRKRGRAEKKGCGREG---------GEGGKEEEEEEEEEEEE 262
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G01850.1 ID=NO22G01850.1|Name=NO22G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1901bp ATGGAAATCATTCCGCCGACCACTTGCAAAGGTTTCATTATAAAGCTCAC CATTACATCCTACCACTTTGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCACCACAACTCGCCATCTGCGACAAGGAATGGATGG TCACGAGGAGCCCCAGCGCGAGAAGCATCAAACACAGGCGTGATTTCGGC CGCAGTGGTGGACTTGACAGGGTCCTCCCCCTCCTCCAGCAACGGCACCA GCACGACGCACCCCTCCTCCTCCTCCCCTTTATCCTCTTCCCTCCTCCCT GCCGACCCCCTCCTCCGGCGTGTCCACATTGGCAAGTGCCTTCAGCTCCT ATACCCCCAAATCTTTTCCGCGGGCGTCTTACCCACCTCCTCCCTTCCCC TCACCCGTGTACGAGAAGCGATTTTCCACGGTATTCAAGCAGTCAAATAC TCTTCTCTGGAGGCCTTTCGTACCGAGGTGCGGTCGCTTATCACCACCCA TGCCTGCCCGAAGGACTGTGCGACTGCTTTACTAAATCGTGTCGACCACG TGGTGGCCACTGCCAGGGACGTGGAGATGCTCTATTCGCACGGGCAGGGG CTGCCCCAGGCGAGAGACGATTTGTTCCGATGTCTGGGCGATTATCCAAG TTTGAGGGAGATGGAGAGGAGGAAAAGGGAGGGCGGGCGGGTGGGAGGGA GGAGGAGAGTGGCAGGGGGGAATGGAAAAGGAGGCCGAGAAGAGGAGGAG GAGGAGGGGGAGGAAACGAGTGAAGGAGAGCAAAAAGGGCAGTCAAATAA CAACGCGGCTGCGGTTGTCACAGTGAAGTGTGGCGGTCGGCCCCCTCCCT CATCCTCCTCCTCCAAGAAACGAAGGAAAGGGGAGTCAGGACGGTACGGT CAGGGGGCAGGGAAGGCACTCCCTCTTTCGGCTCCACACACCGGACCTAC GAGCGGAGGAGGGGAGGGGGGACGGACAAAGAGGAAGGACGGTGAGTCGG TTCTTTTGTCTGCGGCGGAACGGTATGCAGAGTGGAAGTCACAGGTGGTT ATGGAGGAGGAGGAGGAGGAGTGGGAGGAAAAGGGGGAGGGAGGGAGGGA GAGGAAGAGGAGAAGGAGTGCGGAGGAGGGGACAGGGATGCATTCATCGG ATTGCTCGTCGTTGTCGTCGTCGTCGTCATCGTCGGAGGAGGAGGAGGAG GAGGAGGAGGACGACGAGCCCCTCCTTCGCCTCTTCCCCTTTCCCCCCCC CCCTCTCCCCCTCGTCCTCCTCTCTCAACCCCCACCCACCTTCGCCATCG GTCTCAATCATTCCTCCTCCTCTGACCCCTCCCTCCCTCCCTCCCTCCCT CCTTACTTCACCTTCCGCGTCGGCCTTCCCCGCTGCTGCCGTCGAGCGGT AAAACGTCTACAGACCTCTTGCTCGTTGGTGGTGGAGCTGAGGTATGCAG GGAAAGAGGGCGGGAGGGAGGGAGGGGAGGGAGGGATCGAGCAGTCTTAT CTAACGTTGCTTGAGGATCCCGTGCTGAGGCCGGGAGAGAGGGAATGGCT TGTCAAGGCCCGCATCACGGCGTTGAGTCGGCAACATACCCGGAGGGCGT TTTCGTTGTGGGTGGATGTTAGTGCGTTTGAACAGCGGGAGCATGGCCTG TGTGTGTCGGGGGTGCAGACGTCGGCGGTGCGGACGGTGAAGGTGGGGAA GGGGGGAGGAGGAAAGGAGTCGGGGGGGAAGGAGGGGGCGAAGGCGGGAA GAGAAGGGATGCCGTTGAAGAGGCGATCGATCGTCTTGACGCGAGGGCAA GTGAAGGATAAGAAGGCGGGCTAGAGAGAGAGAAGAGGGAGGGAAGGAGG GAGAGAGGGAGGAGGCAGAGGCGGAGAAGGAGGAGAAGGAGGAGGAGGAG G back to topprotein sequence of NO22G01850.1 >NO22G01850.1-protein ID=NO22G01850.1-protein|Name=NO22G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp MEIIPPTTCKGFIIKLTITSYHFVQQQQQQQQQQQQQQHHNSPSATRNGW SRGAPAREASNTGVISAAVVDLTGSSPSSSNGTSTTHPSSSSPLSSSLLP ADPLLRRVHIGKCLQLLYPQIFSAGVLPTSSLPLTRVREAIFHGIQAVKY SSLEAFRTEVRSLITTHACPKDCATALLNRVDHVVATARDVEMLYSHGQG LPQARDDLFRCLGDYPSLREMERRKREGGRVGGRRRVAGGNGKGGREEEE EEGEETSEGEQKGQSNNNAAAVVTVKCGGRPPPSSSSSKKRRKGESGRYG QGAGKALPLSAPHTGPTSGGGEGGRTKRKDGESVLLSAAERYAEWKSQVV MEEEEEEWEEKGEGGRERKRRRSAEEGTGMHSSDCSSLSSSSSSSEEEEE EEEDDEPLLRLFPFPPPPLPLVLLSQPPPTFAIGLNHSSSSDPSLPPSLP PYFTFRVGLPRCCRRAVKRLQTSCSLVVELRYAGKEGGREGGEGGIEQSY LTLLEDPVLRPGEREWLVKARITALSRQHTRRAFSLWVDVSAFEQREHGL CVSGVQTSAVRTVKVGKGGGGKESGGKEGAKAGREGMPLKRRSIVLTRGQ VKDKKAG* back to topmRNA from alignment at chr22:554714..556876+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G01850.1 ID=NO22G01850.1|Name=NO22G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp|location=Sequence derived from alignment at chr22:554714..556876+ (Nannochloropsis oceanica) ATGGAAATCATTCCGCCGACCACTTGCAAAGGTTTCATTATAAAGCTCAC
CATTACATCCTACCACTTTGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGTAACAGCAGTTGCGCCATAAGGCAGGACCAATC
ACCTCCTTGATCCTTTTCTTCCCTCCTGTGATGAACGAAGCAATTTATTC
GACACGACTCCGACCCGGCACCAGCCACAACTCGCCATCTGCGACAAGGA
ATGGATGGTCACGAGGAGCCCCAGCGCGAGAAGCATCAAACACAGGCGTG
ATTTCGGCCGCAGTGGTGGACTTGACAGGGTCCTCCCCCTCCTCCAGCAA
CGGCACCAGCACGACGCACCCCTCCTCCTCCTCCCCTTTATCCTCTTCCC
TCCTCCCTGCCGACCCCCTCCTCCGGCGTGTCCACATTGGCAAGTGCCTT
CAGCTCCTATACCCCCAAATCTTTTCCGCGGGCGTCTTACCCACCTCCTC
CCTTCCCCTCACCCGTGTACGAGAAGCGATTTTCCACGGTATTCAAGCAG
TCAAATACTCTTCTCTGGAGGCCTTTCGTACCGAGGTGCGGTCGCTTATC
ACCACCCATGCCTGCCCGAAGGACTGTGCGACTGCTTTACTAAATCGTGT
CGACCACGTGGTGGCCACTGCCAGGGACGTGGAGATGCTCTATTCGCACG
GGCAGGGGCTGCCCCAGGTGCCGAGCAGGAGGGGGGGGCCGAGGGGGAGG
GAGGGAAGGGGGGGGGATTGTACACTTACCATCAGGCGAGAGACGATTTG
TTCCGATGTCTGGGCGATTATCCAAGTTTGAGGGAGATGGAGAGGAGGAA
AAGGGAGGGCGGGCGGGTGGGAGGGAGGAGGAGAGTGGCAGGGGGGAATG
GAAAAGGAGGCCGAGAAGAGGAGGAGGAGGAGGGGGAGGAAACGAGTGAA
GGAGAGCAAAAAGGGCAGTCAAATAACAACGCGGCTGCGGTTGTCACAGT
GAAGTGTGGCGGTCGGCCCCCTCCCTCATCCTCCTCCTCCAAGAAACGAA
GGAAAGGGGAGTCAGGACGGTACGGTCAGGGGGCAGGGAAGGCACTCCCT
CTTTCGGCTCCACACACCGGACCTACGAGCGGAGGAGGGGAGGGGGGACG
GACAAAGAGGAAGGACGGTGAGTCGGTTCTTTTGTCTGCGGCGGAACGGT
ATGCAGAGTGGAAGTCACAGGTGGTTATGGAGGAGGAGGAGGAGGAGTGG
GAGGAAAAGGGGGAGGGAGGGAGGGAGAGGAAGAGGAGAAGGAGTGCGGA
GGAGGGGACAGGGATGCATTCATCGGATTGCTCGTCGTTGTCGTCGTCGT
CGTCATCGTCGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGAGGTGGAG
AAGAGAAAACCTTGTAGTATCACCCGATCTCGTCGGCGCAACCGTCGCTC
CCTCCCTCCTTCCCACCATTGCTCCTCCAGCCCCTCCTTCGCCTCTTCCC
CTTTCCCCCCCCCCCTCTCCCCCTCGTCCTCCTCTCTCAACCCCCACCCA
CCTTCGCCATCGGTCTCAATCATTCCTCCTCCTCTGACCCCTCCCTCCCT
CCCTCCCTCCCTCCTTACTTCACCTTCCGCGTCGGCCTTCCCCGCTGCTG
CCGTCGAGCGGTAAAACGTCTACAGACCTCTTGCTCGTTGGTGGTGGAGC
TGAGGTATGCAGGGAAAGAGGGCGGGAGGGAGGGAGGGGAGGGAGGGATC
GAGCAGTCTTATCTAACGTTGCTTGAGGATCCCGTGCTGAGGCCGGGAGA
GAGGGAATGGCTTGTCAAGGCCCGCATCACGGCGTTGAGTCGGCAACATA
CCCGGAGGGCGTTTTCGTTGTGGGTGGATGTTAGTGCGTTTGAACAGCGG
GAGCATGGCCTGTGTGTGTCGGGGGTGCAGACGTCGGCGGTGCGGACGGT
GAAGGTGGGGAAGGGGGGAGGAGGAAAGGAGTCGGGGGGGAAGGAGGGGG
CGAAGGCGGGAAGAGAAGGGATGCCGTTGAAGAGGCGATCGATCGTCTTG
ACGCGAGGGCAAGTGAAGGATAAGAAGGCGGGCTAGAGAGAGAGAAGAGG
GAGGGAAGGAGGGAGAGAGGGAGGAGGCAGAGGCGGAGAAGGAGGAGAAG
GAGGAGGAGGAGG back to topCoding sequence (CDS) from alignment at chr22:554714..556876+ >NO22G01850.1 ID=NO22G01850.1|Name=NO22G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at chr22:554714..556876+ (Nannochloropsis oceanica) ATGGAAATCATTCCGCCGACCACTTGCAAAGGTTTCATTATAAAGCTCAC CATTACATCCTACCACTTTGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCACCACAACTCGCCATCTGCGACAAGGAATGGATGG TCACGAGGAGCCCCAGCGCGAGAAGCATCAAACACAGGCGTGATTTCGGC CGCAGTGGTGGACTTGACAGGGTCCTCCCCCTCCTCCAGCAACGGCACCA GCACGACGCACCCCTCCTCCTCCTCCCCTTTATCCTCTTCCCTCCTCCCT GCCGACCCCCTCCTCCGGCGTGTCCACATTGGCAAGTGCCTTCAGCTCCT ATACCCCCAAATCTTTTCCGCGGGCGTCTTACCCACCTCCTCCCTTCCCC TCACCCGTGTACGAGAAGCGATTTTCCACGGTATTCAAGCAGTCAAATAC TCTTCTCTGGAGGCCTTTCGTACCGAGGTGCGGTCGCTTATCACCACCCA TGCCTGCCCGAAGGACTGTGCGACTGCTTTACTAAATCGTGTCGACCACG TGGTGGCCACTGCCAGGGACGTGGAGATGCTCTATTCGCACGGGCAGGGG CTGCCCCAGGCGAGAGACGATTTGTTCCGATGTCTGGGCGATTATCCAAG TTTGAGGGAGATGGAGAGGAGGAAAAGGGAGGGCGGGCGGGTGGGAGGGA GGAGGAGAGTGGCAGGGGGGAATGGAAAAGGAGGCCGAGAAGAGGAGGAG GAGGAGGGGGAGGAAACGAGTGAAGGAGAGCAAAAAGGGCAGTCAAATAA CAACGCGGCTGCGGTTGTCACAGTGAAGTGTGGCGGTCGGCCCCCTCCCT CATCCTCCTCCTCCAAGAAACGAAGGAAAGGGGAGTCAGGACGGTACGGT CAGGGGGCAGGGAAGGCACTCCCTCTTTCGGCTCCACACACCGGACCTAC GAGCGGAGGAGGGGAGGGGGGACGGACAAAGAGGAAGGACGGTGAGTCGG TTCTTTTGTCTGCGGCGGAACGGTATGCAGAGTGGAAGTCACAGGTGGTT ATGGAGGAGGAGGAGGAGGAGTGGGAGGAAAAGGGGGAGGGAGGGAGGGA GAGGAAGAGGAGAAGGAGTGCGGAGGAGGGGACAGGGATGCATTCATCGG ATTGCTCGTCGTTGTCGTCGTCGTCGTCATCGTCGGAGGAGGAGGAGGAG GAGGAGGAGGACGACGAGCCCCTCCTTCGCCTCTTCCCCTTTCCCCCCCC CCCTCTCCCCCTCGTCCTCCTCTCTCAACCCCCACCCACCTTCGCCATCG GTCTCAATCATTCCTCCTCCTCTGACCCCTCCCTCCCTCCCTCCCTCCCT CCTTACTTCACCTTCCGCGTCGGCCTTCCCCGCTGCTGCCGTCGAGCGGT AAAACGTCTACAGACCTCTTGCTCGTTGGTGGTGGAGCTGAGGTATGCAG GGAAAGAGGGCGGGAGGGAGGGAGGGGAGGGAGGGATCGAGCAGTCTTAT CTAACGTTGCTTGAGGATCCCGTGCTGAGGCCGGGAGAGAGGGAATGGCT TGTCAAGGCCCGCATCACGGCGTTGAGTCGGCAACATACCCGGAGGGCGT TTTCGTTGTGGGTGGATGTTAGTGCGTTTGAACAGCGGGAGCATGGCCTG TGTGTGTCGGGGGTGCAGACGTCGGCGGTGCGGACGGTGAAGGTGGGGAA GGGGGGAGGAGGAAAGGAGTCGGGGGGGAAGGAGGGGGCGAAGGCGGGAA GAGAAGGGATGCCGTTGAAGAGGCGATCGATCGTCTTGACGCGAGGGCAA GTGAAGGATAAGAAGGCGGGCTAG back to top
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