NO22G01030.2, NO22G01030.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G01030.2
Unique NameNO22G01030.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2707
Alignment locationchr22:318043..321277 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:318043..321277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G01030.2 vs.
Match: EWM21479.1 (Cytochrome b561/ferric reductase transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 329.7 bits (844), Expect = 7.200e-87
Identity = 147/185 (79.46%), Postives = 168/185 (90.81%), Query Frame = 0 
Query:    1 MGEAQVGAHGIIMIIAFLFMTQLAEVIAWWAANKTNLRSNYFKAVEHGTKLWNAHRALNGGAFVLGLIGMIIILSAEEFKEGLGSKERHVIYGFVIIVAMFLQVLFRVAYPDDKTKWIHRWFGRAINLWAFFVAFTGYELANYGTNDGTDGGGEDFDNIVIIFCFWAIFRFGIWAFFFTMRKMGK 186
            MGEA VGAHGIIMI+AFLFMTQLAE IAWWA+NKTN+R+NYFK +EHG++LWNAHR LN  AF+LGL+GMIIILSAEEFKE +GSKERHVIYGF +IVA+F+ +LFRVAYPDDKTKW+HRWFGRAINLWAFFV FTGYELANYG+N+GTD GGEDFDNIVIIFCFW I +FGIW F+  +R+ GK
Sbjct:    1 MGEAAVGAHGIIMIVAFLFMTQLAEAIAWWASNKTNMRTNYFKVIEHGSRLWNAHRGLNTLAFILGLVGMIIILSAEEFKEAMGSKERHVIYGFSMIVALFVHILFRVAYPDDKTKWVHRWFGRAINLWAFFVTFTGYELANYGSNEGTDAGGEDFDNIVIIFCFWVILKFGIWVFYLILRRRGK 185
The following BLAST results are available for this feature:
BLAST of NO22G01030.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21479.17.200e-8779.46Cytochrome b561/ferric reductase transmembrane [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01030NO22G01030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G01030.2NO22G01030.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G01030.2.cds1NO22G01030.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01030.2.cds2NO22G01030.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01030.2.cds3NO22G01030.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G01030.2.cds4NO22G01030.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G01030.2 ID=NO22G01030.2|Name=NO22G01030.2|organism=Nannochloropsis oceanica|type=mRNA|length=2707bp
TCCTTCATTCCTTTTTTAAAATTAATTTTCAACAATTTTCGCTAGGACTG
GATAACAACGTGATCTTCGTCCCCATCGTCTTCGTCCTCCTCATCTGCTA
TCAAAAAGACATCACCAGCTAGGCTGGCTGGTAGATTGTGCCTTTTCTTT
TGAAAAAGCGAGAGATTCCACAATGACAAAAACGATGCCGGCCATGGTGG
AGGAGACAGAATGGCAGTGGTGCCAGATGCGCAGGAAGCTTCTTCACCTC
AGCAGCAGCAGTAGCAGCAGCAGTATGGAATGGTGGTGGTGCCGGCGAGG
AGGAGGGATGCCCCCCCCCCCCACCCTGGTGCAGGAATGTTTCGTGTCTG
ATAGTCATATTGACTAGCTCACTCGACCGAGCTGCTTTCTCTTCGTTATG
GCGCTGCTGCTGCTTTTGCAGGAGGACGTATTGGTAGGTAGTGAGTTGGT
GACAGTGGAGAAAGAAGTGGAAGAGGAGGAGCTGTCCTAAGAGTACAGCC
AGCAAATAAAATAATTGCGACCAAACCCAAGTAAAACATTGGCAGACAGT
GGGAAAAGGAAGGCTTCGCGGGTGTTTTGTGGATCATTGACCCAATGCGT
AAGCCCCAGCACGGTCATGCCAGCTAGCAGAGCTGTGACGGCCAAGGCGC
TGACAAGCGTGCAGGCACAGGAAAGGTAGGTGCTCTGGCCGATGCACGTG
TTGAGCCACAAACAGTGGTGGTCGGATCCTGCGGTAAATTTCGAGCAGAT
GCGACAATGTGCGGTTCCTTTTTGTACATTGGCTTGGCACATGCCATAGT
ACACGCTACCTTGCTGCTGTTGTTGCGGGTGCTGGTATGGGTGGCTCGAA
CTAGTGCTCTTCTCAATATCGTCATCCGGAGTCAAACTGCCTTATTCAAG
ACCGACGCATCTGATGGGTCAACGAGCATGGTTACAAGGCCAGAACTGAA
TGTCAGGAGCAGGAGCGTGGCGCAGGTGATAGTCAAGGCAAAAGAGGTGA
AGGCTGGCACGACAACGACGAGGCTCACGGCATAAAAGCTAAGCACGCAC
CTTGCCGTGATTCGGAGCGGATGGAAGGGATACTCGAAGCCATGGCGTCG
CCTGGCCATCGTTTATATTGGTTATAATGGGATTGATCTATGTTCGATCC
GCAAGTAAGAATTCCGTTTCGACTAACTGCCCATTCTCGGAGCTCCGGGA
CATCGAGTATGGTAATTGCCAAGCCGCCCCTAATTGAGAGGCAGGGTAAG
CATGTCCAAGGGGGATGAAGAAGGTACAAGTCGACGTATGCATAGGAGGA
TCTGTGTGAGACATAGGCATACAAATTGCCTCATCATTTGACTAATTGGA
CAGCTGCTGGGCTTTTTGGCGCCTCGTGACTGTGAAGGCACACCAAATGT
GGGACGCTCACAACGCTCACTCAAAATTGCCTCCACACACCCCTTTGTCC
TCGTGCACATCCACCTCAGCACCTACACAAGGTCCATGACGGAAATCGCT
TCCCATGATCCCGCTGTGTGCGCTTTTGTGCGTTCTTACGGTTGCACTAG
CCTCGCCGCCCATACAATCAATGTCATCTTGATGTCTCAGTTGAGACCTC
GACGAAACGAGCGCCGTCGCAGCAGTAAAGCAAGGCGTCTTCGCTCGGTC
TGGACCTGACTTTACGTCCAACGAAAAGGATGCCTGTAGCACGCAACATT
GCGGCAGCCATGCATTGCTCGCGTCAAGGCGTTAACAAGTGATTCAAGCG
ACAAGGCATGGAATGCAACTCCCCGTAATCTCACCCCCCCCTCCCACAAA
AATCTCTATCTCCTTCACATGCAGGTCAACTTCCTTCATACCATCCGAGA
AAGATGGGAGAAGCACAAGTAGGCGCGCATGGGATCATCATGATCATTGC
CTTTCTCTTCATGACGCAACTCGCTGAGGTGATCGCCTGGTGGGCGGCCA
ATAAGACGAACCTCCGCTCCAATTACTTCAAAGCCGTCGAACACGGGACC
AAGCTCTGGAACGCGCACCGGGCGCTCAATGGGGGTGCCTTTGTCCTAGG
GTTGATTGGTATGATCATCATATTGAGTGCTGAGGAATTTAAGGAAGGAC
TAGGGTCGAAGGAGCGACATGTGATTTACGGCTTTGTCATTATCGTGGCG
ATGTTTTTGCAGGTTCTGTTTCGGGTGGCTTATCCTGATGATAAGACCAA
ATGGATCCATCGATGGTTCGGCCGCGCCATTAACTTGTGGGCCTTCTTCG
TGGCCTTCACTGGCTACGAACTCGCCAACTACGGGACCAACGACGGCACA
GACGGAGGAGGGGAGGACTTCGATAACATTGTGATCATTTTCTGCTTCTG
GGCTATCTTCAGATTTGGCATTTGGGCCTTCTTTTTCACCATGCGCAAGA
TGGGCAAGGTAAGTGCATGCATTCACAAGGGAAGGCAGAATGCCCCTCTT
CCCCTCATCACGAGCAGCTTTCTTACCTCTTCCGAGCCCACCTTTTTCCC
TCAACTTCTGCTACTTGCACACATTCCCCCGAAACCATGGTAGGCACAGA
AGTACGACGATCTAGGTAGCGAGGCTGGTATTCAGTTGCCCACCAGTGAG
GTGGCGTCACCCCCGACTACTGCCTAAACCCAACAAGTCCTAGAGGATGT
CAGGCTGCATGCGATAGTTCTATAGGAGTGCAGGAAAAAAGAACTAGACA
TGGTGGC
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protein sequence of NO22G01030.2

>NO22G01030.2-protein ID=NO22G01030.2-protein|Name=NO22G01030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MGEAQVGAHGIIMIIAFLFMTQLAEVIAWWAANKTNLRSNYFKAVEHGTK
LWNAHRALNGGAFVLGLIGMIIILSAEEFKEGLGSKERHVIYGFVIIVAM
FLQVLFRVAYPDDKTKWIHRWFGRAINLWAFFVAFTGYELANYGTNDGTD
GGGEDFDNIVIIFCFWAIFRFGIWAFFFTMRKMGKVSACIHKGRQNAPLP
LITSSFLTSSEPTFFPQLLLLAHIPPKPW*
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mRNA from alignment at chr22:318043..321277+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G01030.2 ID=NO22G01030.2|Name=NO22G01030.2|organism=Nannochloropsis oceanica|type=mRNA|length=3235bp|location=Sequence derived from alignment at chr22:318043..321277+ (Nannochloropsis oceanica)
TCCTTCATTCCTTTTTTAAAATTAATTTTCAACAATTTTCGCTAGGACTG
GATAACAACGTGATCTTCGTCCCCATCGTCTTCGTCCTCCTCATCTGCTA
TCAAAAAGACATCACCAGCTAGGCTGGCTGGTAGATTGTGCCTTTTCTTT
TGAAAAAGCGAGAGATTCCACAATGACAAAAACGATGCCGGCCATGGTGG
AGGAGACAGAATGGCAGTGGTGCCAGATGCGCAGGAAGCTTCTTCACCTC
AGCAGCAGCAGTAGCAGCAGCAGTATGGAATGGTGGTGGTGCCGGCGAGG
AGGAGGGATGCCCCCCCCCCCCACCCTGGTGCAGGAATGTTTCGTGTCTG
ATAGTCATATTGACTAGCTCACTCGACCGAGCTGCTTTCTCTTCGTTATG
GCGCTGCTGCTGCTTTTGCAGGAGGACGTATTGGTAGGTAGTGAGTTGGT
GACAGTGGAGAAAGAAGTGGAAGAGGAGGAGCTGTCCTAAGAGTACAGCC
AGCAAATAAAATAATTGCGACCAAACCCAAGTAAAACATTGGCAGACAGT
GGGAAAAGGAAGGCTTCGCGGGTGTTTTGTGGATCATTGACCCAATGCGT
AAGCCCCAGCACGGTCATGCCAGCTAGCAGAGCTGTGACGGCCAAGGCGC
TGACAAGCGTGCAGGCACAGGAAAGGTAGGTGCTCTGGCCGATGCACGTG
TTGAGCCACAAACAGTGGTGGTCGGATCCTGCGGTAAATTTCGAGCAGAT
GCGACAATGTGCGGTTCCTTTTTGTACATTGGCTTGGCACATGCCATAGT
ACACGCTACCTTGCTGCTGTTGTTGCGGGTGCTGGTATGGGTGGCTCGAA
CTAGTGCTCTTCTCAATATCGTCATCCGGAGTCAAACTGCCTTATTCAAG
ACCGACGCATCTGATGGGTCAACGAGCATGGTTACAAGGCCAGAACTGAA
TGTCAGGAGCAGGAGCGTGGCGCAGGTGATAGTCAAGGCAAAAGAGGTGA
AGGCTGGCACGACAACGACGAGGCTCACGGCATAAAAGCTAAGCACGCAC
CTTGCCGTGATTCGGAGCGGATGGAAGGGATACTCGAAGCCATGGCGTCG
CCTGGCCATCGTTTATATTGGTTATAATGGGATTGATCTATGTTCGATCC
GCAAGTAAGAATTCCGTTTCGACTAACTGCCCATTCTCGGAGCTCCGGGA
CATCGAGTATGGTAATTGCCAAGCCGCCCCTAATTGAGAGGCAGGGTAAG
CATGTCCAAGGGGGATGAAGAAGGTACAAGTCGACGTATGCATAGGAGGA
TCTGTGTGAGACATAGGCATACAAATTGCCTCATCATTTGACTAATTGGA
CAGCTGCTGGGCTTTTTGGCGCCTCGTGACTGTGAAGGCACACCAAATGT
GGGACGCTCACAACGCTCACTCAAAATTGCCTCCACACACCCCTTTGTCC
TCGTGCACATCCACCTCAGCACCTACACAAGGTCCATGACGGAAATCGCT
TCCCATGATCCCGCTGTGTGCGCTTTTGTGCGTTCTTACGGTTGCACTAG
CCTCGCCGCCCATACAATCAATGTCATCTTGATGTCTCAGTTGAGACCTC
GACGAAACGAGCGCCGTCGCAGCAGTAAAGCAAGGCGTCTTCGCTCGGTC
TGGACCTGACTTTACGTCCAACGAAAAGGATGCCTGTAGCACGCAACATT
GCGGCAGCCATGCATTGCTCGCGTCAAGGCGTTAACAAGTGATTCAAGCG
ACAAGGCATGGAATGCAACTCCCCGTAATCTCACCCCCCCCTCCCACAAA
AATCTCTATCTCCTTCACATGCAGGTCAACTTCCTTCATACCATCCGAGA
AAGATGGGAGAAGCACAAGTAGGCGCGCATGGGATCATCATGATCATTGC
CTTTCTCTTCATGACGCAACTCGCTGAGGTGATCGCCTGGTGGGCGGCCA
ATAAGGTACGCGTTTGTACGCGTGAGCGAGAGCGAAAGGCTTGTGTAAGC
TTGAGTCACCAATATAAGAAGCAGAGCTAACAGCATCTTTCTTTCTTTTG
TCATCCCTTTTCTTCACTTCTTGACCAGACGAACCTCCGCTCCAATTACT
TCAAAGCCGTCGAACACGGGACCAAGCTCTGGAACGCGCACCGGGCGCTC
AATGGGGGTGCCTTTGTCCTAGGGTTGATTGGTATGATCATCATATTGAG
TGCTGAGGAATTTAAGGAAGGACTAGGGTCGAAGGAGCGACATGTGATTT
ACGGCTTTGTCATTATCGTGGCGATGTTTTTGCAGGTTCTGTTTCGGGTG
GCTTATCCTGATGTAAGTTTCATCAGTAAGAAGGGAGGGAATGGTTGAAG
GGATGAGGGATGGAGAAAGACACGCGTATACAAAGCGCGTAAGTTTTATG
CATATGTCCTGTCGCTCCTTACTCGCACGTACTCATATGTGTACACAGGA
TAAGACCAAATGGATCCATCGATGGTTCGGCCGCGCCATTAACTTGTGGG
CCTTCTTCGTGGCCTTCACTGGCTACGAACTCGCCAACTACGGGACCAAC
GACGGCACAGACGGAGGAGGGGAGGACTTCGATAACATTGTGATCATTTT
CTGCTTCTGGGCTATCTTCAGATTTGGGTGCGTATCGCTGCTGCCTAGAT
CGTTTTAATTCCTCGGGTTACCTCACTCATCTCTTTTTCTCGCTCTCGCA
ATCTCTCCTTCTTTCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCATACACACACAAACACACACACG
GTCGCCCGCACACACACACACACACACACACACACACACACACACACACA
CACACACACGCACGCATACACGAAATGTCAATCTCCCTGAAAATAGCATT
TGGGCCTTCTTTTTCACCATGCGCAAGATGGGCAAGGTAAGTGCATGCAT
TCACAAGGGAAGGCAGAATGCCCCTCTTCCCCTCATCACGAGCAGCTTTC
TTACCTCTTCCGAGCCCACCTTTTTCCCTCAACTTCTGCTACTTGCACAC
ATTCCCCCGAAACCATGGTAGGCACAGAAGTACGACGATCTAGGTAGCGA
GGCTGGTATTCAGTTGCCCACCAGTGAGGTGGCGTCACCCCCGACTACTG
CCTAAACCCAACAAGTCCTAGAGGATGTCAGGCTGCATGCGATAGTTCTA
TAGGAGTGCAGGAAAAAAGAACTAGACATGGTGGC
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Coding sequence (CDS) from alignment at chr22:318043..321277+

>NO22G01030.2 ID=NO22G01030.2|Name=NO22G01030.2|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at chr22:318043..321277+ (Nannochloropsis oceanica)
ATGGGAGAAGCACAAGTAGGCGCGCATGGGATCATCATGATCATTGCCTT
TCTCTTCATGACGCAACTCGCTGAGGTGATCGCCTGGTGGGCGGCCAATA
AGACGAACCTCCGCTCCAATTACTTCAAAGCCGTCGAACACGGGACCAAG
CTCTGGAACGCGCACCGGGCGCTCAATGGGGGTGCCTTTGTCCTAGGGTT
GATTGGTATGATCATCATATTGAGTGCTGAGGAATTTAAGGAAGGACTAG
GGTCGAAGGAGCGACATGTGATTTACGGCTTTGTCATTATCGTGGCGATG
TTTTTGCAGGTTCTGTTTCGGGTGGCTTATCCTGATGATAAGACCAAATG
GATCCATCGATGGTTCGGCCGCGCCATTAACTTGTGGGCCTTCTTCGTGG
CCTTCACTGGCTACGAACTCGCCAACTACGGGACCAACGACGGCACAGAC
GGAGGAGGGGAGGACTTCGATAACATTGTGATCATTTTCTGCTTCTGGGC
TATCTTCAGATTTGGCATTTGGGCCTTCTTTTTCACCATGCGCAAGATGG
GCAAGGTAAGTGCATGCATTCACAAGGGAAGGCAGAATGCCCCTCTTCCC
CTCATCACGAGCAGCTTTCTTACCTCTTCCGAGCCCACCTTTTTCCCTCA
ACTTCTGCTACTTGCACACATTCCCCCGAAACCATGGTAG
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Synonyms
Publications