NO22G01030.1, NO22G01030.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G01030.1
Unique Name	NO22G01030.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2572
Alignment location	chr22:318043..321277 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:318043..321277 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO22G01030.1 vs.
Match: EWM21479.1 (Cytochrome b561/ferric reductase transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 360.5 bits (924), Expect = 3.500e-96
Identity = 164/214 (76.64%), Postives = 189/214 (88.32%), Query Frame = 0

Query:    1 MGEAQVGAHGIIMIIAFLFMTQLAEVIAWWAANKTNLRSNYFKAVEHGTKLWNAHRALNGGAFVLGLIGMIIILSAEEFKEGLGSKERHVIYGFVIIVAMFLQVLFRVAYPDDKTKWIHRWFGRAINLWAFFVAFTGYELANYGTNDGTDGGGEDFDNIVIIFCFWAIFRFGIWAFFFTMRKMGKAQKYDDLGSEAGIQLPTS---EVASPPTT 212
            MGEA VGAHGIIMI+AFLFMTQLAE IAWWA+NKTN+R+NYFK +EHG++LWNAHR LN  AF+LGL+GMIIILSAEEFKE +GSKERHVIYGF +IVA+F+ +LFRVAYPDDKTKW+HRWFGRAINLWAFFV FTGYELANYG+N+GTD GGEDFDNIVIIFCFW I +FGIW F+  +R+ GKAQKYD +G+  GIQLPT+   EV SPP +
Sbjct:    1 MGEAAVGAHGIIMIVAFLFMTQLAEAIAWWASNKTNMRTNYFKVIEHGSRLWNAHRGLNTLAFILGLVGMIIILSAEEFKEAMGSKERHVIYGFSMIVALFVHILFRVAYPDDKTKWVHRWFGRAINLWAFFVTFTGYELANYGSNEGTDAGGEDFDNIVIIFCFWVILKFGIWVFYLILRRRGKAQKYDSVGAAEGIQLPTTNAIEVGSPPAS 214

The following BLAST results are available for this feature:

BLAST of NO22G01030.1 vs.

BLAST of NO22G01030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21479.1	3.500e-96	76.64	Cytochrome b561/ferric reductase transmembrane [Na...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO22G01030	NO22G01030	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01030.1	NO22G01030.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO22G01030.1.cds1	NO22G01030.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01030.1.cds2	NO22G01030.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01030.1.cds3	NO22G01030.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01030.1.cds4	NO22G01030.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO22G01030.1.cds5	NO22G01030.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr22:318043..321277+
coding sequence from alignment at chr22:318043..321277+

mRNA sequence

>NO22G01030.1 ID=NO22G01030.1|Name=NO22G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2572bp
TCCTTCATTCCTTTTTTAAAATTAATTTTCAACAATTTTCGCTAGGACTG
GATAACAACGTGATCTTCGTCCCCATCGTCTTCGTCCTCCTCATCTGCTA
TCAAAAAGACATCACCAGCTAGGCTGGCTGGTAGATTGTGCCTTTTCTTT
TGAAAAAGCGAGAGATTCCACAATGACAAAAACGATGCCGGCCATGGTGG
AGGAGACAGAATGGCAGTGGTGCCAGATGCGCAGGAAGCTTCTTCACCTC
AGCAGCAGCAGTAGCAGCAGCAGTATGGAATGGTGGTGGTGCCGGCGAGG
AGGAGGGATGCCCCCCCCCCCCACCCTGGTGCAGGAATGTTTCGTGTCTG
ATAGTCATATTGACTAGCTCACTCGACCGAGCTGCTTTCTCTTCGTTATG
GCGCTGCTGCTGCTTTTGCAGGAGGACGTATTGGTAGGTAGTGAGTTGGT
GACAGTGGAGAAAGAAGTGGAAGAGGAGGAGCTGTCCTAAGAGTACAGCC
AGCAAATAAAATAATTGCGACCAAACCCAAGTAAAACATTGGCAGACAGT
GGGAAAAGGAAGGCTTCGCGGGTGTTTTGTGGATCATTGACCCAATGCGT
AAGCCCCAGCACGGTCATGCCAGCTAGCAGAGCTGTGACGGCCAAGGCGC
TGACAAGCGTGCAGGCACAGGAAAGGTAGGTGCTCTGGCCGATGCACGTG
TTGAGCCACAAACAGTGGTGGTCGGATCCTGCGGTAAATTTCGAGCAGAT
GCGACAATGTGCGGTTCCTTTTTGTACATTGGCTTGGCACATGCCATAGT
ACACGCTACCTTGCTGCTGTTGTTGCGGGTGCTGGTATGGGTGGCTCGAA
CTAGTGCTCTTCTCAATATCGTCATCCGGAGTCAAACTGCCTTATTCAAG
ACCGACGCATCTGATGGGTCAACGAGCATGGTTACAAGGCCAGAACTGAA
TGTCAGGAGCAGGAGCGTGGCGCAGGTGATAGTCAAGGCAAAAGAGGTGA
AGGCTGGCACGACAACGACGAGGCTCACGGCATAAAAGCTAAGCACGCAC
CTTGCCGTGATTCGGAGCGGATGGAAGGGATACTCGAAGCCATGGCGTCG
CCTGGCCATCGTTTATATTGGTTATAATGGGATTGATCTATGTTCGATCC
GCAAGTAAGAATTCCGTTTCGACTAACTGCCCATTCTCGGAGCTCCGGGA
CATCGAGTATGGTAATTGCCAAGCCGCCCCTAATTGAGAGGCAGGGTAAG
CATGTCCAAGGGGGATGAAGAAGGTACAAGTCGACGTATGCATAGGAGGA
TCTGTGTGAGACATAGGCATACAAATTGCCTCATCATTTGACTAATTGGA
CAGCTGCTGGGCTTTTTGGCGCCTCGTGACTGTGAAGGCACACCAAATGT
GGGACGCTCACAACGCTCACTCAAAATTGCCTCCACACACCCCTTTGTCC
TCGTGCACATCCACCTCAGCACCTACACAAGGTCCATGACGGAAATCGCT
TCCCATGATCCCGCTGTGTGCGCTTTTGTGCGTTCTTACGGTTGCACTAG
CCTCGCCGCCCATACAATCAATGTCATCTTGATGTCTCAGTTGAGACCTC
GACGAAACGAGCGCCGTCGCAGCAGTAAAGCAAGGCGTCTTCGCTCGGTC
TGGACCTGACTTTACGTCCAACGAAAAGGATGCCTGTAGCACGCAACATT
GCGGCAGCCATGCATTGCTCGCGTCAAGGCGTTAACAAGTGATTCAAGCG
ACAAGGCATGGAATGCAACTCCCCGTAATCTCACCCCCCCCTCCCACAAA
AATCTCTATCTCCTTCACATGCAGGTCAACTTCCTTCATACCATCCGAGA
AAGATGGGAGAAGCACAAGTAGGCGCGCATGGGATCATCATGATCATTGC
CTTTCTCTTCATGACGCAACTCGCTGAGGTGATCGCCTGGTGGGCGGCCA
ATAAGACGAACCTCCGCTCCAATTACTTCAAAGCCGTCGAACACGGGACC
AAGCTCTGGAACGCGCACCGGGCGCTCAATGGGGGTGCCTTTGTCCTAGG
GTTGATTGGTATGATCATCATATTGAGTGCTGAGGAATTTAAGGAAGGAC
TAGGGTCGAAGGAGCGACATGTGATTTACGGCTTTGTCATTATCGTGGCG
ATGTTTTTGCAGGTTCTGTTTCGGGTGGCTTATCCTGATGATAAGACCAA
ATGGATCCATCGATGGTTCGGCCGCGCCATTAACTTGTGGGCCTTCTTCG
TGGCCTTCACTGGCTACGAACTCGCCAACTACGGGACCAACGACGGCACA
GACGGAGGAGGGGAGGACTTCGATAACATTGTGATCATTTTCTGCTTCTG
GGCTATCTTCAGATTTGGCATTTGGGCCTTCTTTTTCACCATGCGCAAGA
TGGGCAAGGCACAGAAGTACGACGATCTAGGTAGCGAGGCTGGTATTCAG
TTGCCCACCAGTGAGGTGGCGTCACCCCCGACTACTGCCTAAACCCAACA
AGTCCTAGAGGATGTCAGGCTGCATGCGATAGTTCTATAGGAGTGCAGGA
AAAAAGAACTAGACATGGTGGC

protein sequence of NO22G01030.1

>NO22G01030.1-protein ID=NO22G01030.1-protein|Name=NO22G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MGEAQVGAHGIIMIIAFLFMTQLAEVIAWWAANKTNLRSNYFKAVEHGTK
LWNAHRALNGGAFVLGLIGMIIILSAEEFKEGLGSKERHVIYGFVIIVAM
FLQVLFRVAYPDDKTKWIHRWFGRAINLWAFFVAFTGYELANYGTNDGTD
GGGEDFDNIVIIFCFWAIFRFGIWAFFFTMRKMGKAQKYDDLGSEAGIQL
PTSEVASPPTTA*

mRNA from alignment at chr22:318043..321277+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO22G01030.1 ID=NO22G01030.1|Name=NO22G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3235bp|location=Sequence derived from alignment at chr22:318043..321277+ (Nannochloropsis oceanica)
TCCTTCATTCCTTTTTTAAAATTAATTTTCAACAATTTTCGCTAGGACTG
GATAACAACGTGATCTTCGTCCCCATCGTCTTCGTCCTCCTCATCTGCTA
TCAAAAAGACATCACCAGCTAGGCTGGCTGGTAGATTGTGCCTTTTCTTT
TGAAAAAGCGAGAGATTCCACAATGACAAAAACGATGCCGGCCATGGTGG
AGGAGACAGAATGGCAGTGGTGCCAGATGCGCAGGAAGCTTCTTCACCTC
AGCAGCAGCAGTAGCAGCAGCAGTATGGAATGGTGGTGGTGCCGGCGAGG
AGGAGGGATGCCCCCCCCCCCCACCCTGGTGCAGGAATGTTTCGTGTCTG
ATAGTCATATTGACTAGCTCACTCGACCGAGCTGCTTTCTCTTCGTTATG
GCGCTGCTGCTGCTTTTGCAGGAGGACGTATTGGTAGGTAGTGAGTTGGT
GACAGTGGAGAAAGAAGTGGAAGAGGAGGAGCTGTCCTAAGAGTACAGCC
AGCAAATAAAATAATTGCGACCAAACCCAAGTAAAACATTGGCAGACAGT
GGGAAAAGGAAGGCTTCGCGGGTGTTTTGTGGATCATTGACCCAATGCGT
AAGCCCCAGCACGGTCATGCCAGCTAGCAGAGCTGTGACGGCCAAGGCGC
TGACAAGCGTGCAGGCACAGGAAAGGTAGGTGCTCTGGCCGATGCACGTG
TTGAGCCACAAACAGTGGTGGTCGGATCCTGCGGTAAATTTCGAGCAGAT
GCGACAATGTGCGGTTCCTTTTTGTACATTGGCTTGGCACATGCCATAGT
ACACGCTACCTTGCTGCTGTTGTTGCGGGTGCTGGTATGGGTGGCTCGAA
CTAGTGCTCTTCTCAATATCGTCATCCGGAGTCAAACTGCCTTATTCAAG
ACCGACGCATCTGATGGGTCAACGAGCATGGTTACAAGGCCAGAACTGAA
TGTCAGGAGCAGGAGCGTGGCGCAGGTGATAGTCAAGGCAAAAGAGGTGA
AGGCTGGCACGACAACGACGAGGCTCACGGCATAAAAGCTAAGCACGCAC
CTTGCCGTGATTCGGAGCGGATGGAAGGGATACTCGAAGCCATGGCGTCG
CCTGGCCATCGTTTATATTGGTTATAATGGGATTGATCTATGTTCGATCC
GCAAGTAAGAATTCCGTTTCGACTAACTGCCCATTCTCGGAGCTCCGGGA
CATCGAGTATGGTAATTGCCAAGCCGCCCCTAATTGAGAGGCAGGGTAAG
CATGTCCAAGGGGGATGAAGAAGGTACAAGTCGACGTATGCATAGGAGGA
TCTGTGTGAGACATAGGCATACAAATTGCCTCATCATTTGACTAATTGGA
CAGCTGCTGGGCTTTTTGGCGCCTCGTGACTGTGAAGGCACACCAAATGT
GGGACGCTCACAACGCTCACTCAAAATTGCCTCCACACACCCCTTTGTCC
TCGTGCACATCCACCTCAGCACCTACACAAGGTCCATGACGGAAATCGCT
TCCCATGATCCCGCTGTGTGCGCTTTTGTGCGTTCTTACGGTTGCACTAG
CCTCGCCGCCCATACAATCAATGTCATCTTGATGTCTCAGTTGAGACCTC
GACGAAACGAGCGCCGTCGCAGCAGTAAAGCAAGGCGTCTTCGCTCGGTC
TGGACCTGACTTTACGTCCAACGAAAAGGATGCCTGTAGCACGCAACATT
GCGGCAGCCATGCATTGCTCGCGTCAAGGCGTTAACAAGTGATTCAAGCG
ACAAGGCATGGAATGCAACTCCCCGTAATCTCACCCCCCCCTCCCACAAA
AATCTCTATCTCCTTCACATGCAGGTCAACTTCCTTCATACCATCCGAGA
AAGATGGGAGAAGCACAAGTAGGCGCGCATGGGATCATCATGATCATTGC
CTTTCTCTTCATGACGCAACTCGCTGAGGTGATCGCCTGGTGGGCGGCCA
ATAAGGTACGCGTTTGTACGCGTGAGCGAGAGCGAAAGGCTTGTGTAAGC
TTGAGTCACCAATATAAGAAGCAGAGCTAACAGCATCTTTCTTTCTTTTG
TCATCCCTTTTCTTCACTTCTTGACCAGACGAACCTCCGCTCCAATTACT
TCAAAGCCGTCGAACACGGGACCAAGCTCTGGAACGCGCACCGGGCGCTC
AATGGGGGTGCCTTTGTCCTAGGGTTGATTGGTATGATCATCATATTGAG
TGCTGAGGAATTTAAGGAAGGACTAGGGTCGAAGGAGCGACATGTGATTT
ACGGCTTTGTCATTATCGTGGCGATGTTTTTGCAGGTTCTGTTTCGGGTG
GCTTATCCTGATGTAAGTTTCATCAGTAAGAAGGGAGGGAATGGTTGAAG
GGATGAGGGATGGAGAAAGACACGCGTATACAAAGCGCGTAAGTTTTATG
CATATGTCCTGTCGCTCCTTACTCGCACGTACTCATATGTGTACACAGGA
TAAGACCAAATGGATCCATCGATGGTTCGGCCGCGCCATTAACTTGTGGG
CCTTCTTCGTGGCCTTCACTGGCTACGAACTCGCCAACTACGGGACCAAC
GACGGCACAGACGGAGGAGGGGAGGACTTCGATAACATTGTGATCATTTT
CTGCTTCTGGGCTATCTTCAGATTTGGGTGCGTATCGCTGCTGCCTAGAT
CGTTTTAATTCCTCGGGTTACCTCACTCATCTCTTTTTCTCGCTCTCGCA
ATCTCTCCTTCTTTCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCATACACACACAAACACACACACG
GTCGCCCGCACACACACACACACACACACACACACACACACACACACACA
CACACACACGCACGCATACACGAAATGTCAATCTCCCTGAAAATAGCATT
TGGGCCTTCTTTTTCACCATGCGCAAGATGGGCAAGGTAAGTGCATGCAT
TCACAAGGGAAGGCAGAATGCCCCTCTTCCCCTCATCACGAGCAGCTTTC
TTACCTCTTCCGAGCCCACCTTTTTCCCTCAACTTCTGCTACTTGCACAC
ATTCCCCCGAAACCATGGTAGGCACAGAAGTACGACGATCTAGGTAGCGA
GGCTGGTATTCAGTTGCCCACCAGTGAGGTGGCGTCACCCCCGACTACTG
CCTAAACCCAACAAGTCCTAGAGGATGTCAGGCTGCATGCGATAGTTCTA
TAGGAGTGCAGGAAAAAAGAACTAGACATGGTGGC

Coding sequence (CDS) from alignment at chr22:318043..321277+

>NO22G01030.1 ID=NO22G01030.1|Name=NO22G01030.1|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr22:318043..321277+ (Nannochloropsis oceanica)
ATGGGAGAAGCACAAGTAGGCGCGCATGGGATCATCATGATCATTGCCTT
TCTCTTCATGACGCAACTCGCTGAGGTGATCGCCTGGTGGGCGGCCAATA
AGACGAACCTCCGCTCCAATTACTTCAAAGCCGTCGAACACGGGACCAAG
CTCTGGAACGCGCACCGGGCGCTCAATGGGGGTGCCTTTGTCCTAGGGTT
GATTGGTATGATCATCATATTGAGTGCTGAGGAATTTAAGGAAGGACTAG
GGTCGAAGGAGCGACATGTGATTTACGGCTTTGTCATTATCGTGGCGATG
TTTTTGCAGGTTCTGTTTCGGGTGGCTTATCCTGATGATAAGACCAAATG
GATCCATCGATGGTTCGGCCGCGCCATTAACTTGTGGGCCTTCTTCGTGG
CCTTCACTGGCTACGAACTCGCCAACTACGGGACCAACGACGGCACAGAC
GGAGGAGGGGAGGACTTCGATAACATTGTGATCATTTTCTGCTTCTGGGC
TATCTTCAGATTTGGCATTTGGGCCTTCTTTTTCACCATGCGCAAGATGG
GCAAGGCACAGAAGTACGACGATCTAGGTAGCGAGGCTGGTATTCAGTTG
CCCACCAGTGAGGTGGCGTCACCCCCGACTACTGCCTAA

Synonyms

Publications