NO22G00720.3, NO22G00720.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00720.3
Unique NameNO22G00720.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1498
Alignment locationchr22:240451..242048 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:240451..242048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00720.3 vs.
Match: XP_005855294.1 (DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis gaditana CCMP526]; EKU21072.1 DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis gaditana CCMP526]; EWM21426.1 dna-directed rna polymerase ii subunit rpb11-a [Nannochloropsis gaditana])

HSP 1 Score: 205.7 bits (522), Expect = 9.500e-50
Identity = 100/109 (91.74%), Postives = 106/109 (97.25%), Query Frame = 0 
Query:   32 RCEWKDSANEKMPNSGTLTINKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALSTPMQALENALSDLNQEFTGLKSKFQQEVRRVQEEQAEREYR 141
            +CEWKDSANEKM NSGTL INKEDHTMGNL+RMQLLRDKQVKFAGYIHPHPLIHKIELRVQT+DRALSTPMQALENALSDLNQEFTGLK++FQQEVRRVQ EQA+REYR
Sbjct:   18 KCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQALENALSDLNQEFTGLKARFQQEVRRVQAEQADREYR 126
The following BLAST results are available for this feature:
BLAST of NO22G00720.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855294.19.500e-5091.74DNA-directed RNA polymerase II subunit RPB11 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00720NO22G00720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00720.3NO22G00720.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00720.3.cds1NO22G00720.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00720.3.cds2NO22G00720.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00720.3 ID=NO22G00720.3|Name=NO22G00720.3|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp
TGACCAAAAAATAAATCCTGTGCTATACATATCACAGAATTATATAAGAA
GGAGGGGGTAAGCTGCGATGTTTATATCTTCGCGTGTGGTCTGAATGGCG
GGGTTGGGCGCAGCAAAAGGACCACTTGCACCTGAATTCAGGTCTGAATA
ATAATTGATCCGACAAGTTTCTTCCATACAGAAGCAACTTGAACGTGTGA
TGATCACGAGGTACCCTCGCTTACCCTGCTGTACCCGCGAACCATGAAGC
CACTCCAGCATGTACAAACTATGCATGCGTGTTCTCTAACACCTGGACTC
GGATCCCTTTCGACACTGTAAGCTACAGAAAGCGCCGCGGGCTCCGGCAT
CCATACTAGCCTCCCTCCCTCCTTCCGCGCGTCGCCGAGCCAAGGCCAAG
CAAGCCAGCCTATCACAATGAATGAACCCAAGCGGTAAGTCCGTAGGGAG
AAATGCTTCCACCACCACTCAAAGGAGGAGCTTCACTTTTTTGGCGTCGT
GTAAGGGCAGTGTGGTCATGTATGTGTGGAGAATCTCCCACGCGTTGTGT
AAGGGCATTGTGGTCATGTATGTGAGAAAAAGGCCACCATTCTCCCACGG
TTAGGACAGACCAGGCTACCCTGCTTGCGCTACCCCTTTCCCCTACCTCC
TTTCCGCATACATGACAATCTGATCGTGGATCCTCAAGAGGTTTGAAAGG
GCTTGCGTCATGGATGTGCCTGTTCACTCGCTCACTCACACACCATCCGT
CTTGCTCACTATCATACTTACCCACGATCAATAACAGGGCGGACTCGTAC
CGGCTGGTGGAAGGCGAGAGGAAGTAAGTGCACCAGGAAATGGGTTATGA
CAAGGGTTTATTACCCTGATTTTGTGTGTGTTATATTCTTTGTATCTGTG
TCCGCGTATTTTGTCGCGTTTTGGGTCGGCTTTTGTTGCTAGTCTCTGTA
TGTATGTACGTGCTCATGTTCGCATTTTGTGTTTTTCAGCTAATGCATAA
CAAGCTCTCACCTGCCGTCCCTCCACTCTTTCTTCCTCCCTCTCTCAGAT
GTGAATGGAAAGATAGTGCCAACGAGAAGATGCCTAATTCGGGCACACTG
ACCATCAACAAGGAGGATCACACCATGGGGAATCTTGTTCGGATGCAGCT
CCTGAGAGATAAGCAAGTAAAGTTTGCAGGCTACATCCACCCACACCCTT
TGATTCATAAAATTGAGCTGCGGGTGCAGACTATGGATAGGGCGCTGTCG
ACTCCCATGCAGGCCCTAGAAAATGCCTTGTCCGATCTGAATCAAGAGTT
CACGGGTCTCAAAAGCAAGTTCCAACAAGAAGTGAGACGCGTCCAAGAAG
AACAAGCAGAGCGGGAGTACAGATAGAGAAAGAAGAGGGAGGGAGGAAGT
GTGGGAGGGAGGGAGGAAGGAAGGGAGGAAGGGAGGTGTTTATACAGAAA
GAAGAAGAAGCAATGAGGGATACGAAAGCAAGTATAAGCATTCATGTG
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protein sequence of NO22G00720.3

>NO22G00720.3-protein ID=NO22G00720.3-protein|Name=NO22G00720.3|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MYVLMFAFCVFQLMHNKLSPAVPPLFLPPSLRCEWKDSANEKMPNSGTLT
INKEDHTMGNLVRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTMDRALST
PMQALENALSDLNQEFTGLKSKFQQEVRRVQEEQAEREYR*
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mRNA from alignment at chr22:240451..242048-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00720.3 ID=NO22G00720.3|Name=NO22G00720.3|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at chr22:240451..242048- (Nannochloropsis oceanica)
TGACCAAAAAATAAATCCTGTGCTATACATATCACAGAATTATATAAGAA
GGAGGGGGTAAGCTGCGATGTTTATATCTTCGCGTGTGGTCTGAATGGCG
GGGTTGGGCGCAGCAAAAGGACCACTTGCACCTGAATTCAGGTCTGAATA
ATAATTGATCCGACAAGTTTCTTCCATACAGAAGCAACTTGAACGTGTGA
TGATCACGAGGTACCCTCGCTTACCCTGCTGTACCCGCGAACCATGAAGC
CACTCCAGCATGTACAAACTATGCATGCGTGTTCTCTAACACCTGGACTC
GGATCCCTTTCGACACTGTAAGCTACAGAAAGCGCCGCGGGCTCCGGCAT
CCATACTAGCCTCCCTCCCTCCTTCCGCGCGTCGCCGAGCCAAGGCCAAG
CAAGCCAGCCTATCACAATGAATGAACCCAAGCGGTAAGTCCGTAGGGAG
AAATGCTTCCACCACCACTCAAAGGAGGAGCTTCACTTTTTTGGCGTCGT
GTAAGGGCAGTGTGGTCATGTATGTGTGGAGAATCTCCCACGCGTTGTGT
AAGGGCATTGTGGTCATGTATGTGAGAAAAAGGCCACCATTCTCCCACGG
TTAGGACAGACCAGGCTACCCTGCTTGCGCTACCCCTTTCCCCTACCTCC
TTTCCGCATACATGACAATCTGATCGTGGATCCTCAAGAGGTTTGAAAGG
GCTTGCGTCATGGATGTGCCTGTTCACTCGCTCACTCACACACCATCCGT
CTTGCTCACTATCATACTTACCCACGATCAATAACAGGGCGGACTCGTAC
CGGCTGGTGGAAGGCGAGAGGAAGTAAGTGCACCAGGAAATGGGTTATGA
CAAGGGTTTATTACCCTGATTTTGTGTGTGTTATATTCTTTGTATCTGTG
TCCGCGTATTTTGTCGCGTTTTGGGTCGGCTTTTGTTGCTAGTCTCTGTA
TGTATGTACGTGCTCATGTTCGCATTTTGTGTTTTTCAGCTAATGCATAA
CAAGCTCTCACCTGCCGTCCCTCCACTCTTTCTTCCTCCCTCTCTCAGAT
GTGAATGGAAAGATAGTGCCAACGAGAAGATGCCTAATTCGGGCACACTG
ACCATCAACAAGGAGGATCACACCATGGGGAATCTTGTTCGGATGCAGCT
CCTGAGAGATAAGCAAGTAAAGTTTGCAGGCTACATCCACCCACACCCTT
TGATTCATAAAATTGAGCTGCGGGTGCAGACTATGGATAGGGCGCTGTCG
ACTCCCATGCAGGTATTTATTCATTGATCGATTTACTTGGTCATTCATTT
GTTTATTTATTGGTGAACTAATTCACAAACTTATTTTATGTATTTTTCAA
TATTGACTACAGGCCCTAGAAAATGCCTTGTCCGATCTGAATCAAGAGTT
CACGGGTCTCAAAAGCAAGTTCCAACAAGAAGTGAGACGCGTCCAAGAAG
AACAAGCAGAGCGGGAGTACAGATAGAGAAAGAAGAGGGAGGGAGGAAGT
GTGGGAGGGAGGGAGGAAGGAAGGGAGGAAGGGAGGTGTTTATACAGAAA
GAAGAAGAAGCAATGAGGGATACGAAAGCAAGTATAAGCATTCATGTG
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Coding sequence (CDS) from alignment at chr22:240451..242048-

>NO22G00720.3 ID=NO22G00720.3|Name=NO22G00720.3|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at chr22:240451..242048- (Nannochloropsis oceanica)
ATGTACGTGCTCATGTTCGCATTTTGTGTTTTTCAGCTAATGCATAACAA
GCTCTCACCTGCCGTCCCTCCACTCTTTCTTCCTCCCTCTCTCAGATGTG
AATGGAAAGATAGTGCCAACGAGAAGATGCCTAATTCGGGCACACTGACC
ATCAACAAGGAGGATCACACCATGGGGAATCTTGTTCGGATGCAGCTCCT
GAGAGATAAGCAAGTAAAGTTTGCAGGCTACATCCACCCACACCCTTTGA
TTCATAAAATTGAGCTGCGGGTGCAGACTATGGATAGGGCGCTGTCGACT
CCCATGCAGGCCCTAGAAAATGCCTTGTCCGATCTGAATCAAGAGTTCAC
GGGTCTCAAAAGCAAGTTCCAACAAGAAGTGAGACGCGTCCAAGAAGAAC
AAGCAGAGCGGGAGTACAGATAG
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Synonyms
Publications