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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr22 | genome | chr22:231273..233214 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G00680.1 vs.
Match: EWM21412.1 (lipoic acid synthetase [Nannochloropsis gaditana]) HSP 1 Score: 595.1 bits (1533), Expect = 1.500e-166 Identity = 297/351 (84.62%), Postives = 315/351 (89.74%), Query Frame = 0
Query: 17 ALLLLLPFIAHAFSFSFFRPAVAQQQRHARS-STLMMSTTESKP-ITPKVGGAMPEGRRPDWFHVPAPGGSHTRFEELRESLRELDLHTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQAPPAADPLEPLKTAEAIARWGITYVVLTSVDRDDMPDGGADHFAQTVEYIKLRKPEMLVECLVSDFAGDLKAVERLATSGLDVYAHNVETVERLQKYVRDKRATYAQSLRVLAHAKECQPSVYTKTSLMLGLGETEEEVLQAMRDMRAHNVDVLTLGQYLRPTEHHLAVVEYVTPDRFDFYRVKGEEMGFKYVASGPLVRSSYKAGEFFLENELKRAKAER 366
+L +LLP AF+ S QR S +T+ MSTTE +P + PKVGG MPEGRRPDWFHVPAPGGSHTRFEELRESLRELDLHTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQAPP ADP EPLKTAEA+ARWGI YVVLTSVDRDDMPDGGADHFAQTVEYIKLRKPEMLVECLVSDF GDL AVERLATSGLDVYAHNVETVERLQKYVRDKRA+Y QSL+VLAHAK QP+VYTKTSLMLGLGE E EVL+AMRDMRAHNVDVLTLGQYLRPT+HHLAVVEYVTP++FDF+R +GEEMGFKYVASGPLVRSSYKAGEFFLENELKR KA+R
Sbjct: 18 SLCILLPGSIDAFAPSRLLLTSWGDQRPTISLNTITMSTTEPRPPVVPKVGGPMPEGRRPDWFHVPAPGGSHTRFEELRESLRELDLHTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQAPPPADPFEPLKTAEAVARWGINYVVLTSVDRDDMPDGGADHFAQTVEYIKLRKPEMLVECLVSDFRGDLAAVERLATSGLDVYAHNVETVERLQKYVRDKRASYTQSLQVLAHAKAAQPTVYTKTSLMLGLGEEEGEVLEAMRDMRAHNVDVLTLGQYLRPTDHHLAVVEYVTPEKFDFFRKQGEEMGFKYVASGPLVRSSYKAGEFFLENELKRVKAKR 368
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G00680.1 ID=NO22G00680.1|Name=NO22G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
TGATGAGGTTCACCTGGGCCTTGGAAATGAAGGCGAGCCGACGTTATCTC
CAATCCATCGCTCACCCAAATCCAAGCCCCTGTCCTTGTCGATGGCTGGA
CGAACACAAGCACACACACACACACACTCACAAACACCCCCCCCCTCTGA
TCTCATTGGGTCAAACTCCACCACAACGTACAGCCGTCACGTTGCTCACT
TCGATCGATAGTTTGTTGTCCCCCTTCTCCTTGAACGCGACGCAAGCACG
GACGCACGAAGCAACGTCTGAGAGCCAAAGGCAAGAGAGCAGGCAGCAGC
ATGACCGTGAGCCCACCACTCCCACCACGACCGGTCCTCCTCTTCGGCGC
TCTCCTCCTTCTCCTCCCTTTTATTGCCCACGCCTTCTCTTTTTCCTTCT
TCAGGCCGGCGGTGGCGCAACAACAACGCCACGCCCGCAGCAGCACCCTA
ATGATGTCTACCACAGAGTCCAAGCCCATCACCCCCAAGGTGGGTGGCGC
CATGCCCGAAGGCCGTCGTCCAGACTGGTTTCACGTCCCAGCCCCCGGGG
GCTCTCATACGCGCTTTGAGGAACTGAGGGAGAGCCTGCGGGAGCTGGAC
TTGCACACCGTGTGCGAAGAGGCGCAATGCCCTAATATCGGCGAGTGCTG
GAACGGTGGCACCGGCACAATTATGTTGTTGGGGGACACGTGCACGCGTG
GCTGCAAATTTTGCGCTGTCAAGACCTCCCAAGCTCCTCCAGCTGCCGAT
CCCCTAGAGCCCCTTAAAACAGCCGAGGCCATTGCGCGTTGGGGTATAAC
CTACGTCGTGCTCACAAGCGTCGATCGCGACGACATGCCGGATGGAGGCG
CGGACCACTTCGCACAAACGGTCGAGTACATCAAGTTGCGGAAGCCTGAG
ATGTTGGTTGAATGCCTAGTGAGTGATTTTGCGGGGGACCTCAAGGCCGT
TGAGAGGTTGGCAACGTCTGGTTTGGATGTGTACGCGCACAACGTCGAAA
CGGTGGAGAGGCTTCAGAAATACGTTCGAGACAAGCGAGCGACATACGCA
CAGTCTCTCCGGGTGCTGGCGCATGCGAAGGAGTGCCAACCATCCGTGTA
TACCAAGACGAGCTTAATGTTGGGGTTGGGCGAGACCGAGGAAGAAGTAT
TGCAGGCCATGCGTGACATGCGCGCGCACAATGTGGACGTGTTGACGCTT
GGTCAGTATTTGCGTCCAACTGAGCACCATTTGGCCGTGGTAGAGTATGT
GACGCCAGATAGGTTCGACTTCTACCGCGTAAAAGGGGAAGAAATGGGGT
TTAAGTACGTGGCAAGTGGCCCGCTTGTCCGATCTTCGTACAAAGCCGGA
GAGTTCTTTTTGGAAAATGAGCTCAAGAGGGCAAAGGCAGAGAGGGAGGG
AGGAGGGGTAGTGGCATAGAGGAGAGCTGAAGGTGTATATAGGGAGAGAA
AGAAGAGAACGCGTATTAGTAGGCATCCTGAAGGGCTGTAAGAGAGGATA
GAGAGCGGCTGTTAGCTTAAAGTGCTGTGAGTGTTATACGCGCGCAATCG
AACATGTGATGTGATTTAAACCATGCGTGTGCGGGTCGTGTGTGTGTGTG
TGTGTGTGATATGTGTGTATTGTGTTTGTGTGAGTGTAGGTGTTTTGTGA
GGTGACCGACGGGAATGCTTCACGACATATGAGATGTTGTCGAGTTTCTC
TTTGCGCTCAAATAAGAACGAATCACGACAAGTGTGCTGACTT back to topprotein sequence of NO22G00680.1 >NO22G00680.1-protein ID=NO22G00680.1-protein|Name=NO22G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MTVSPPLPPRPVLLFGALLLLLPFIAHAFSFSFFRPAVAQQQRHARSSTL
MMSTTESKPITPKVGGAMPEGRRPDWFHVPAPGGSHTRFEELRESLRELD
LHTVCEEAQCPNIGECWNGGTGTIMLLGDTCTRGCKFCAVKTSQAPPAAD
PLEPLKTAEAIARWGITYVVLTSVDRDDMPDGGADHFAQTVEYIKLRKPE
MLVECLVSDFAGDLKAVERLATSGLDVYAHNVETVERLQKYVRDKRATYA
QSLRVLAHAKECQPSVYTKTSLMLGLGETEEEVLQAMRDMRAHNVDVLTL
GQYLRPTEHHLAVVEYVTPDRFDFYRVKGEEMGFKYVASGPLVRSSYKAG
EFFLENELKRAKAEREGGGVVA* back to topmRNA from alignment at chr22:231273..233214- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G00680.1 ID=NO22G00680.1|Name=NO22G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp|location=Sequence derived from alignment at chr22:231273..233214- (Nannochloropsis oceanica)
TGATGAGGTTCACCTGGGCCTTGGAAATGAAGGCGAGCCGACGTTATCTC
CAATCCATCGCTCACCCAAATCCAAGCCCCTGTCCTTGTCGATGGCTGGA
CGAACACAAGCACACACACACACACACTCACAAACACCCCCCCCCTCTGA
TCTCATTGGGTCAAACTCCACCACAACGTACAGCCGTCACGTTGCTCACT
TCGATCGATAGTTTGTTGTCCCCCTTCTCCTTGAACGCGACGCAAGCACG
GACGCACGAAGCAACGTCTGAGAGCCAAAGGCAAGAGAGCAGGCAGCAGC
ATGACCGTGAGCCCACCACTCCCACCACGACCGGTCCTCCTCTTCGGCGC
TCTCCTCCTTCTCCTCCCTTTTATTGCCCACGCCTTCTCTTTTTCCTTCT
TCAGGCCGGCGGTGGCGCAACAACAACGCCACGCCCGCAGCAGCACCCTA
ATGATGTCTACCACAGAGTCCAAGCCCATCACCCCCAAGGTGGGTGGCGC
CATGCCCGAAGGCCGTCGTCCAGACTGGTTTCACGTCCCAGCCCCCGGGG
GCTCTCATACGCGCTTTGAGGAACTGAGGGAGAGCCTGCGGGAGCTGGAC
TTGCACACCGTGTGCGAAGAGGCGCAATGCCCTAATATCGGCGAGTGCTG
GAACGGTGGCACCGGCACAATTATGTTGTTGGGGGACACGTGCACGCGGT
GAGTAAGGGGAGAGGAAAGAGGGAAGGCTGTGAGGGGGGTAATGTGGTTT
GTTATTCCTCGATCGCGGACGGGTCGTAGCGGAGGGCTGGCGGGTTGGTA
GGAGGAAGAGTCTGTCACACGGCCTAGACCATCATCTCTCCACTTATACT
CCCTCCCTCCTCTCGCCCCCTCTCGCCCGCTTCAAACCTTCCCTCAGTGG
CTGCAAATTTTGCGCTGTCAAGACCTCCCAAGCTCCTCCAGCTGCCGATC
CCCTAGAGCCCCTTAAAACAGCCGAGGCCATTGCGCGTTGGGGTATAACC
TACGTCGTGCTCACAAGCGTCGATCGCGACGACATGCCGGATGGAGGCGC
GGACCACTTCGCACAAACGGTCGAGTACATCAAGTTGCGGAAGCCTGAGA
TGTTGGTTGAATGCCTAGTGAGTGATTTTGCGGGGGACCTCAAGGCCGTT
GAGAGGTTGGCAACGTCTGGTTTGGATGTGTACGCGCACAACGTCGAAAC
GGTGGAGAGGCTTCAGAAATACGTTCGAGACAAGCGAGCGACATACGCAC
AGTCTCTCCGGGTGCTGGCGCATGCGAAGGAGTGCCAACCATCCGTGTAT
ACCAAGACGAGCTTAATGTTGGGGTTGGGCGAGACCGAGGAAGAAGTATT
GCAGGCCATGCGTGACATGCGCGCGCACAATGTGGACGTGTTGACGCTTG
GTCAGTATTTGCGTCCAACTGAGCACCATTTGGCCGTGGTAGAGTATGTG
ACGCCAGATAGGTTCGACTTCTACCGCGTAAAAGGGGAAGAAATGGGGTT
TAAGTACGTGGCAAGTGGCCCGCTTGTCCGATCTTCGTACAAAGCCGGAG
AGTTCTTTTTGGAAAATGAGCTCAAGAGGGCAAAGGCAGAGAGGGAGGGA
GGAGGGGTAGTGGCATAGAGGAGAGCTGAAGGTGTATATAGGGAGAGAAA
GAAGAGAACGCGTATTAGTAGGCATCCTGAAGGGCTGTAAGAGAGGATAG
AGAGCGGCTGTTAGCTTAAAGTGCTGTGAGTGTTATACGCGCGCAATCGA
ACATGTGATGTGATTTAAACCATGCGTGTGCGGGTCGTGTGTGTGTGTGT
GTGTGTGATATGTGTGTATTGTGTTTGTGTGAGTGTAGGTGTTTTGTGAG
GTGACCGACGGGAATGCTTCACGACATATGAGATGTTGTCGAGTTTCTCT
TTGCGCTCAAATAAGAACGAATCACGACAAGTGTGCTGACTT back to topCoding sequence (CDS) from alignment at chr22:231273..233214- >NO22G00680.1 ID=NO22G00680.1|Name=NO22G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr22:231273..233214- (Nannochloropsis oceanica)
ATGACCGTGAGCCCACCACTCCCACCACGACCGGTCCTCCTCTTCGGCGC
TCTCCTCCTTCTCCTCCCTTTTATTGCCCACGCCTTCTCTTTTTCCTTCT
TCAGGCCGGCGGTGGCGCAACAACAACGCCACGCCCGCAGCAGCACCCTA
ATGATGTCTACCACAGAGTCCAAGCCCATCACCCCCAAGGTGGGTGGCGC
CATGCCCGAAGGCCGTCGTCCAGACTGGTTTCACGTCCCAGCCCCCGGGG
GCTCTCATACGCGCTTTGAGGAACTGAGGGAGAGCCTGCGGGAGCTGGAC
TTGCACACCGTGTGCGAAGAGGCGCAATGCCCTAATATCGGCGAGTGCTG
GAACGGTGGCACCGGCACAATTATGTTGTTGGGGGACACGTGCACGCGTG
GCTGCAAATTTTGCGCTGTCAAGACCTCCCAAGCTCCTCCAGCTGCCGAT
CCCCTAGAGCCCCTTAAAACAGCCGAGGCCATTGCGCGTTGGGGTATAAC
CTACGTCGTGCTCACAAGCGTCGATCGCGACGACATGCCGGATGGAGGCG
CGGACCACTTCGCACAAACGGTCGAGTACATCAAGTTGCGGAAGCCTGAG
ATGTTGGTTGAATGCCTAGTGAGTGATTTTGCGGGGGACCTCAAGGCCGT
TGAGAGGTTGGCAACGTCTGGTTTGGATGTGTACGCGCACAACGTCGAAA
CGGTGGAGAGGCTTCAGAAATACGTTCGAGACAAGCGAGCGACATACGCA
CAGTCTCTCCGGGTGCTGGCGCATGCGAAGGAGTGCCAACCATCCGTGTA
TACCAAGACGAGCTTAATGTTGGGGTTGGGCGAGACCGAGGAAGAAGTAT
TGCAGGCCATGCGTGACATGCGCGCGCACAATGTGGACGTGTTGACGCTT
GGTCAGTATTTGCGTCCAACTGAGCACCATTTGGCCGTGGTAGAGTATGT
GACGCCAGATAGGTTCGACTTCTACCGCGTAAAAGGGGAAGAAATGGGGT
TTAAGTACGTGGCAAGTGGCCCGCTTGTCCGATCTTCGTACAAAGCCGGA
GAGTTCTTTTTGGAAAATGAGCTCAAGAGGGCAAAGGCAGAGAGGGAGGG
AGGAGGGGTAGTGGCATAG back to top
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