NO22G00400.1, NO22G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00400.1
Unique NameNO22G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length438
Alignment locationchr22:150496..150933 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:150496..150933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00400.1 vs.
Match: EWM21383.1 (hypothetical protein Naga_100595g1 [Nannochloropsis gaditana])

HSP 1 Score: 63.5 bits (153), Expect = 6.100e-7
Identity = 54/139 (38.85%), Postives = 71/139 (51.08%), Query Frame = 0 
Query:    7 CLPPSLALSPPSSIPPSSPPPLVGEGDKVGSEEEKGGVEKEGEGEEGGGEGEGEGGGGKGRQHKKQKIDTGNRPEREEIKKNAGGKGGRRGGRREGYRIVLDDDLTLGDVVEHFWSMDVSEELCLFYSLRDQQMAGRFW 146
            C  P L  SP  S   S  P  V E    G E ++   +   +  E G     E  GGK R    +  D+    E                G+R+G R++LDD LTLGDV+E+FWS++VSEELCL+Y++R Q MAGRFW
Sbjct:   91 CSLPFLKASPSQSSSSSFSPLQVREEGDGGRESQRNLGQGTIKKVEAGAPQVKETDGGKTRNGSVKGKDSDLMTE----------------GKRQGRRVILDDALTLGDVIEYFWSLNVSEELCLYYTVRTQGMAGRFW 213
The following BLAST results are available for this feature:
BLAST of NO22G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21383.16.100e-738.85hypothetical protein Naga_100595g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00400NO22G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00400.1NO22G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00400.1.cds1NO22G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00400.1 ID=NO22G00400.1|Name=NO22G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=438bp
ATGCTGTCGACTGCCTTGTGCCTTCCTCCCTCTCTTGCCCTTTCCCCCCC
TTCCTCCATTCCTCCCTCTTCGCCTCCTCCTCTTGTGGGAGAGGGCGACA
AGGTTGGGAGCGAGGAAGAGAAGGGAGGGGTAGAGAAAGAAGGAGAAGGA
GAAGAAGGAGGGGGGGAAGGAGAAGGGGAAGGAGGAGGAGGCAAAGGGCG
TCAACACAAAAAACAGAAAATTGACACAGGGAACCGCCCCGAGAGAGAGG
AGATAAAAAAGAATGCAGGAGGGAAGGGAGGGAGGAGGGGGGGAAGGAGG
GAAGGTTATCGGATAGTGCTTGATGATGATTTGACCCTAGGGGATGTGGT
GGAGCACTTCTGGAGTATGGATGTGAGCGAGGAATTGTGTTTGTTCTACT
CGTTGAGGGACCAGCAGATGGCGGGTCGGTTTTGGTGA
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protein sequence of NO22G00400.1

>NO22G00400.1-protein ID=NO22G00400.1-protein|Name=NO22G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MLSTALCLPPSLALSPPSSIPPSSPPPLVGEGDKVGSEEEKGGVEKEGEG
EEGGGEGEGEGGGGKGRQHKKQKIDTGNRPEREEIKKNAGGKGGRRGGRR
EGYRIVLDDDLTLGDVVEHFWSMDVSEELCLFYSLRDQQMAGRFW*
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mRNA from alignment at chr22:150496..150933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00400.1 ID=NO22G00400.1|Name=NO22G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=438bp|location=Sequence derived from alignment at chr22:150496..150933+ (Nannochloropsis oceanica)
ATGCTGTCGACTGCCTTGTGCCTTCCTCCCTCTCTTGCCCTTTCCCCCCC
TTCCTCCATTCCTCCCTCTTCGCCTCCTCCTCTTGTGGGAGAGGGCGACA
AGGTTGGGAGCGAGGAAGAGAAGGGAGGGGTAGAGAAAGAAGGAGAAGGA
GAAGAAGGAGGGGGGGAAGGAGAAGGGGAAGGAGGAGGAGGCAAAGGGCG
TCAACACAAAAAACAGAAAATTGACACAGGGAACCGCCCCGAGAGAGAGG
AGATAAAAAAGAATGCAGGAGGGAAGGGAGGGAGGAGGGGGGGAAGGAGG
GAAGGTTATCGGATAGTGCTTGATGATGATTTGACCCTAGGGGATGTGGT
GGAGCACTTCTGGAGTATGGATGTGAGCGAGGAATTGTGTTTGTTCTACT
CGTTGAGGGACCAGCAGATGGCGGGTCGGTTTTGGTGA
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Coding sequence (CDS) from alignment at chr22:150496..150933+

>NO22G00400.1 ID=NO22G00400.1|Name=NO22G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at chr22:150496..150933+ (Nannochloropsis oceanica)
ATGCTGTCGACTGCCTTGTGCCTTCCTCCCTCTCTTGCCCTTTCCCCCCC
TTCCTCCATTCCTCCCTCTTCGCCTCCTCCTCTTGTGGGAGAGGGCGACA
AGGTTGGGAGCGAGGAAGAGAAGGGAGGGGTAGAGAAAGAAGGAGAAGGA
GAAGAAGGAGGGGGGGAAGGAGAAGGGGAAGGAGGAGGAGGCAAAGGGCG
TCAACACAAAAAACAGAAAATTGACACAGGGAACCGCCCCGAGAGAGAGG
AGATAAAAAAGAATGCAGGAGGGAAGGGAGGGAGGAGGGGGGGAAGGAGG
GAAGGTTATCGGATAGTGCTTGATGATGATTTGACCCTAGGGGATGTGGT
GGAGCACTTCTGGAGTATGGATGTGAGCGAGGAATTGTGTTTGTTCTACT
CGTTGAGGGACCAGCAGATGGCGGGTCGGTTTTGGTGA
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Synonyms
Publications