NO22G00290.1, NO22G00290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00290.1
Unique NameNO22G00290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1230
Alignment locationchr22:105457..107590 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:105457..107590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00290.1 vs.
Match: CBN79329.1 (mitogen-activated protein kinase, putative [Ectocarpus siliculosus])

HSP 1 Score: 365.5 bits (937), Expect = 2.100e-97
Identity = 209/403 (51.86%), Postives = 258/403 (64.02%), Query Frame = 0 
Query:    3 DARRIYREVYILRQLRHHPNMVTLLDCIHPGSPSAFTDLYLVFEYVDTDLYKLILSPQQLSDDHIETFIYQLLLSLKFLQSANVIHRDLKPANILLNEDCSLKLCDFGLARVVNHHCIRASSSSSSSSSSNTEQHRLSPVMDGRPYGFLPSHPPPPPRLVRRQMSECALREEVAAAAAVGGGAPPSVPPSVPPSVTTLGPPPRLTRQLTKHVVTRWYRAPELILLQDYTQAVDMWSLGCIFAELLSMQGESVPNHRERAPLFPGRSCYPLSVDKAHSGSSDRLDQLNVIFSVLGTPSSEDLAGLGPLGRYFSSLPSKPPRPLSTVFPGASAGALDLLQRMLVFNPDRRVTVDEALNHPYLSKVRDPSLEVMVARPL-VDGITNGMGLEDLKEALYEQVCAFHP 405
            DA+RIYRE+YILR +RH   ++ L D + P +   F DLYLVFE+VDTDLYKLI SPQ L+D+H++ F+YQ+L+ LK++ SA+VIHRD+KPAN+LLNEDC+LK+CDFGL+RVV           +   S++      S V+  +  G L   P  P   +       A     AA    GGGA     P  PP      P   L RQLTKHVVTRWYRAPELILLQDY  AVDMWSLGCI AELLSMQ ES P  +ER  LFPG+SC+PLS +K  S  SD LDQLNVIF V+GTPS ED+  LG + +Y + L  KPP  L   + GAS  ALDLL RML F+P RR+T+DEAL HPYL+  R P  EV    P+ ++   N      LK  +YE+V  +HP
Sbjct:  521 DAKRIYREMYILRHIRHK-EIIHLRDVLMPAAYENFRDLYLVFEFVDTDLYKLIGSPQFLTDEHVKLFLYQMLIGLKYVHSAHVIHRDIKPANVLLNEDCTLKVCDFGLSRVV-----------TQEPSTDPNPPAASVVVSAKS-GKLACSPMKPSAAI------AAATSHAAARGGEGGGAGSEDDP--PPE-----PRRILKRQLTKHVVTRWYRAPELILLQDYNNAVDMWSLGCILAELLSMQKESFPTSQERNALFPGKSCFPLSAEKP-SSYSDALDQLNVIFDVIGTPSREDIQDLGEVRQYLARLAYKPPLDLRHKYAGASRLALDLLSRMLRFDPSRRITIDEALEHPYLASCRKPEKEVTARVPITMEFEHNTTDKATLKRLIYEEVLHYHP 896
The following BLAST results are available for this feature:
BLAST of NO22G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN79329.12.100e-9751.86mitogen-activated protein kinase, putative [Ectoca... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00290NO22G00290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00290.1NO22G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00290.1.cds1NO22G00290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00290.1.cds2NO22G00290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00290.1.cds3NO22G00290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00290.1.cds4NO22G00290.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00290.1.cds5NO22G00290.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00290.1.cds6NO22G00290.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00290.1.cds7NO22G00290.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00290.1 ID=NO22G00290.1|Name=NO22G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp
ATGACGGACGCCCGACGCATCTACCGGGAGGTGTATATCCTGAGGCAGCT
TCGGCATCACCCGAACATGGTCACTCTTCTGGACTGCATCCACCCGGGCT
CCCCCTCGGCCTTCACCGACCTTTATCTCGTCTTCGAGTACGTCGACACG
GACCTCTACAAGCTCATTCTCTCCCCGCAGCAGCTCTCCGACGACCACAT
CGAGACGTTCATCTACCAGCTTCTCCTCTCCCTTAAATTTCTGCAGTCTG
CCAACGTCATTCACCGTGATTTGAAACCTGCCAATATCTTGCTCAACGAG
GACTGCTCCCTGAAGCTGTGTGATTTTGGCCTGGCCCGTGTCGTCAACCA
CCACTGCATCCGTGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAATA
CGGAGCAACACAGACTCTCTCCCGTCATGGACGGGCGTCCCTACGGCTTC
CTTCCTTCCCATCCTCCCCCTCCTCCTCGCCTCGTCCGCCGCCAAATGTC
AGAATGCGCTTTAAGGGAAGAGGTAGCCGCTGCTGCAGCTGTTGGTGGAG
GTGCCCCTCCCTCGGTCCCTCCCTCGGTCCCCCCCTCGGTCACGACCTTG
GGCCCCCCTCCCCGTCTCACCCGCCAACTGACAAAGCATGTGGTTACTCG
GTGGTACCGGGCGCCGGAGTTGATCCTCCTACAAGACTACACGCAAGCCG
TCGATATGTGGTCTCTCGGCTGCATTTTTGCCGAGCTCTTGTCCATGCAG
GGAGAAAGCGTGCCCAACCACCGCGAGCGCGCTCCCCTCTTCCCCGGGAG
GTCATGCTACCCGCTCTCTGTCGACAAGGCGCATTCCGGCTCCAGCGACC
GGCTCGACCAGCTCAATGTCATCTTTTCAGTCCTGGGCACTCCTTCCTCC
GAGGACCTGGCTGGACTAGGGCCTCTCGGGCGCTATTTCTCCTCTCTCCC
TTCCAAGCCTCCTCGCCCTCTTTCGACCGTTTTCCCAGGGGCGAGTGCCG
GGGCCCTCGATCTGTTGCAGCGGATGCTTGTCTTTAATCCCGACAGGCGC
GTCACGGTTGACGAGGCGCTGAACCACCCCTACCTGTCCAAGGTACGCGA
TCCCTCGCTGGAGGTGATGGTGGCCAGGCCCCTGGTGGACGGGATTACCA
ACGGGATGGGATTGGAGGACCTGAAGGAGGCGCTCTACGAACAAGTCTGC
GCTTTCCACCCACGACGGGGGGGAGGATGA
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protein sequence of NO22G00290.1

>NO22G00290.1-protein ID=NO22G00290.1-protein|Name=NO22G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MTDARRIYREVYILRQLRHHPNMVTLLDCIHPGSPSAFTDLYLVFEYVDT
DLYKLILSPQQLSDDHIETFIYQLLLSLKFLQSANVIHRDLKPANILLNE
DCSLKLCDFGLARVVNHHCIRASSSSSSSSSSNTEQHRLSPVMDGRPYGF
LPSHPPPPPRLVRRQMSECALREEVAAAAAVGGGAPPSVPPSVPPSVTTL
GPPPRLTRQLTKHVVTRWYRAPELILLQDYTQAVDMWSLGCIFAELLSMQ
GESVPNHRERAPLFPGRSCYPLSVDKAHSGSSDRLDQLNVIFSVLGTPSS
EDLAGLGPLGRYFSSLPSKPPRPLSTVFPGASAGALDLLQRMLVFNPDRR
VTVDEALNHPYLSKVRDPSLEVMVARPLVDGITNGMGLEDLKEALYEQVC
AFHPRRGGG*
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mRNA from alignment at chr22:105457..107590+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00290.1 ID=NO22G00290.1|Name=NO22G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2134bp|location=Sequence derived from alignment at chr22:105457..107590+ (Nannochloropsis oceanica)
ATGACGGACGCCCGACGCATCTACCGGGAGGTGTATATCCTGAGGCAGCT
TCGGTGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGTCTGGACGCTGA
TATGATGGAATCTCATTCTCAACCCCCTACCCCCCCGCCCTCCCTCCCCT
CCCTCCCCTCCTCCCTCCCTCCCTCCCTCCCTCCATCCCTCAGGCATCAC
CCGAACATGGTCACTCTTCTGGACTGCATCCACCCGGGCTCCCCCTCGGC
CTTCACCGACCTTTATCTCGTCTTCGAGTACGTCGACACGGACCTCTACA
AGCTCATTCTCTCCCCGCAGCAGCTCTCCGACGACCACATCGAGACGTTC
ATCTACCAGCTTCTCCTCTCCCTTAAATTTCTGCAGTCTGCCAACGTCAT
TCACCGGTATGTTCCCCCCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCT
TCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCAGACACTGAAACTGC
CACTGCTCTTCCCTCAACGACTGCCCCCTCCCAACTCCCCCCCCCCCTCT
CCAAGTGATTTGAAACCTGCCAATATCTTGCTCAACGAGGACTGCTCCCT
GAAGCTGTGTGATTTTGGCCTGGCCCGTGTCGTCAACCACCACTGCATCC
GTGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAATACGGAGCAACAC
AGACTCTCTCCCGTCATGGACGGGCGTCCCTACGGCTTCCTTCCTTCCCA
TCCTCCCCCTCCTCCTCGCCTCGTCCGCCGCCAAATGTCAGAATGCGCTT
TAAGGGAAGAGGTAGCCGCTGCTGCAGCTGTTGGTGGAGGTGCCCCTCCC
TCGGTCCCTCCCTCGGTCCCCCCCTCGGTCACGACCTTGGGCCCCCCTCC
CCGTCTCACCCGCCAACTGACAAAGCATGTGGTTACTCGGTGGTACCGGT
GCGTCCTCCTGCCCACCCTCCCTTCCTCCCTCCCTCCCTCCTTCCCTCAA
GCCCGGAGACAGCCACTCATCCCCTCCTTTCCTCCCTCCCTCCCTCATCC
CCTCCCTCCCTCTCTCAGGGCGCCGGAGTTGATCCTCCTACAAGACTACA
CGCAAGCCGTCGATATGTGGTCTCTCGGCTGCATTTTTGCCGAGCTCTTG
TCCATGCAGGGAGAAAGCGTGCCCAACCACCGGTAGGAAGGGGGGGAGGG
AGGGTTTTTACCTTACTCCCGACCGTGGAAAGAGGGAGTGTGCCGAGTCA
CCACTATGGAGAGAAGGGGGACGGTTTAAGGGAGGGAAGGAAGAAAAATC
GAAACTTCCCCCGGCGAAAACCATCCTTCACTCATCTTCCCTCCCTTCCT
CCCTCCACCCCCTTACCCCAGCGAGCGCGCTCCCCTCTTCCCCGGGAGGT
CATGCTACCCGCTCTCTGTCGACAAGGCGCATTCCGGCTCCAGCGACCGG
CTCGACCAGCTCAATGTCATCTTTTCAGGTACCTCCCTCCCTCCTTCCGT
TCCTCCCTCCACTACGCAGTCCTTTCCTTTATTCCTCCTTATTTCTCGCC
CCCTCCCACCGCCCCCATCGCTCTCCCTCTCTCCTCACCCTCCTTCCCTC
CCTCCCTCCCTCCCTCATTTCCTCTCTCCCGCCCTCAGTCCTGGGCACTC
CTTCCTCCGAGGACCTGGCTGGACTAGGGCCTCTCGGGCGCTATTTCTCC
TCTCTCCCTTCCAAGCCTCCTCGCCCTCTTTCGACCGTTTTCCCAGGGGC
GAGTGCCGGGGCCCTCGATCTGTTGCAGCGGATGCTTGTCTTTAATCCCG
ACAGGCGCGTCACGGTTGACGAGGCGCTGAACCACCCCTACCTGTCCAAG
GTGCGTCCTCCCTCTTGCTCTACCCCCCGCCCTCCCGCTTATGTGCAGCG
TGGGCGCGTCGAGTCCGTCTGAATGACACTCCTGTCTCCCACCCTGCCTC
CCGCACTCACCCCTCCCTCCCTCCGTCCCTCCCTCCCTGCCTCCAGGTAC
GCGATCCCTCGCTGGAGGTGATGGTGGCCAGGCCCCTGGTGGACGGGATT
ACCAACGGGATGGGATTGGAGGACCTGAAGGAGGCGCTCTACGAACAAGT
CTGCGCTTTCCACCCACGACGGGGGGGAGGATGA
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Coding sequence (CDS) from alignment at chr22:105457..107590+

>NO22G00290.1 ID=NO22G00290.1|Name=NO22G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at chr22:105457..107590+ (Nannochloropsis oceanica)
ATGACGGACGCCCGACGCATCTACCGGGAGGTGTATATCCTGAGGCAGCT
TCGGCATCACCCGAACATGGTCACTCTTCTGGACTGCATCCACCCGGGCT
CCCCCTCGGCCTTCACCGACCTTTATCTCGTCTTCGAGTACGTCGACACG
GACCTCTACAAGCTCATTCTCTCCCCGCAGCAGCTCTCCGACGACCACAT
CGAGACGTTCATCTACCAGCTTCTCCTCTCCCTTAAATTTCTGCAGTCTG
CCAACGTCATTCACCGTGATTTGAAACCTGCCAATATCTTGCTCAACGAG
GACTGCTCCCTGAAGCTGTGTGATTTTGGCCTGGCCCGTGTCGTCAACCA
CCACTGCATCCGTGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAATA
CGGAGCAACACAGACTCTCTCCCGTCATGGACGGGCGTCCCTACGGCTTC
CTTCCTTCCCATCCTCCCCCTCCTCCTCGCCTCGTCCGCCGCCAAATGTC
AGAATGCGCTTTAAGGGAAGAGGTAGCCGCTGCTGCAGCTGTTGGTGGAG
GTGCCCCTCCCTCGGTCCCTCCCTCGGTCCCCCCCTCGGTCACGACCTTG
GGCCCCCCTCCCCGTCTCACCCGCCAACTGACAAAGCATGTGGTTACTCG
GTGGTACCGGGCGCCGGAGTTGATCCTCCTACAAGACTACACGCAAGCCG
TCGATATGTGGTCTCTCGGCTGCATTTTTGCCGAGCTCTTGTCCATGCAG
GGAGAAAGCGTGCCCAACCACCGCGAGCGCGCTCCCCTCTTCCCCGGGAG
GTCATGCTACCCGCTCTCTGTCGACAAGGCGCATTCCGGCTCCAGCGACC
GGCTCGACCAGCTCAATGTCATCTTTTCAGTCCTGGGCACTCCTTCCTCC
GAGGACCTGGCTGGACTAGGGCCTCTCGGGCGCTATTTCTCCTCTCTCCC
TTCCAAGCCTCCTCGCCCTCTTTCGACCGTTTTCCCAGGGGCGAGTGCCG
GGGCCCTCGATCTGTTGCAGCGGATGCTTGTCTTTAATCCCGACAGGCGC
GTCACGGTTGACGAGGCGCTGAACCACCCCTACCTGTCCAAGGTACGCGA
TCCCTCGCTGGAGGTGATGGTGGCCAGGCCCCTGGTGGACGGGATTACCA
ACGGGATGGGATTGGAGGACCTGAAGGAGGCGCTCTACGAACAAGTCTGC
GCTTTCCACCCACGACGGGGGGGAGGATGA
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Synonyms
Publications