NO21G02360.1, NO21G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02360.1
Unique NameNO21G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2170
Alignment locationchr21:708790..712466 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:708790..712466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02360.1 vs.
Match: EWM29473.1 (nadh-cytochrome b5 reductase [Nannochloropsis gaditana])

HSP 1 Score: 533.5 bits (1373), Expect = 4.400e-148
Identity = 249/309 (80.58%), Postives = 286/309 (92.56%), Query Frame = 0 
Query:    1 MEQLTPFLQDNGVAVVAGMLVVLTTIAILTLQSPPKRKRPSGPIALNPDNYVAYKLIEREELTHNTRRFRFALPSAKHVLGLPVGQHISLKYTDKDGKDVSRSYTPVSSDDDLGYVDFCIKVYFANTHPKFPEGGKMSQHLESLKLGDSILMRGPKGSLTYNGRGLFAIKSRGVVTHKKVSQVGMIAGGTGITPMLQILREMLKDTGDKTKVWLLYANQTENDMLLQEELDDIAQKHPDRFQLYNTLDRPPTKWKQGIGFITPEMVKDHQPPPSSSSFYLVCGPPPMIKLAVIPSYEKCGIREGQYFTY 310
            M+Q+ PFLQ+NGVAV AG+LVVL T+AI+T+QS PKRKRPSGP+ALNPDNY+ +KL+EREELTHNTRRFRFAL S +HVLGLPVGQH+SLKYTD +GKDV+RSYTP+SSDDDLGYVDF IKVYFANTHPKFPEGGKMSQHLE+L+LGDSILMRGPKGSLTY GRG FA+KSRG ++ + VS+VGMIAGGTGITPMLQI+REMLKD GDKTKVWLLYANQTEND+LLQEEL++IAQ HPDRF+LY TLDRPPTKWKQGIGF+T +M+K++ PPPSSSSFYLVCGPP M+KLAVIP++EK GI E QY+TY
Sbjct:   69 MDQVAPFLQENGVAVAAGVLVVLATVAIMTMQSHPKRKRPSGPVALNPDNYLPFKLVEREELTHNTRRFRFALQSPQHVLGLPVGQHVSLKYTDSEGKDVTRSYTPISSDDDLGYVDFAIKVYFANTHPKFPEGGKMSQHLEALQLGDSILMRGPKGSLTYQGRGHFALKSRGALSSRTVSKVGMIAGGTGITPMLQIIREMLKDKGDKTKVWLLYANQTENDILLQEELEEIAQHHPDRFKLYYTLDRPPTKWKQGIGFVTSDMIKNNLPPPSSSSFYLVCGPPAMLKLAVIPAFEKEGIAENQYYTY 377
The following BLAST results are available for this feature:
BLAST of NO21G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29473.14.400e-14880.58nadh-cytochrome b5 reductase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02360NO21G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02360.1NO21G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02360.1.cds1NO21G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02360.1.cds2NO21G02360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02360.1.cds3NO21G02360.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02360.1.cds4NO21G02360.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02360.1.cds5NO21G02360.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02360.1.cds6NO21G02360.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02360.1.cds7NO21G02360.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02360.1.cds8NO21G02360.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02360.1.cds9NO21G02360.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02360.1.cds10NO21G02360.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02360.1 ID=NO21G02360.1|Name=NO21G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2170bp
GTTTGTTCTATTTACTGGGGAGAATAAGCTTTCTCGTGGAGTCCATAGAT
AGTGTGCTGGCTACGTAGGGCTTTCCAAAGCAATCATCTCATAACATTCT
TCTTAAAGCCTCCGCTTCTGGAAGAGCATGCATTCATGGGACACTGAGAG
GACCGACAAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCACGGCGCAC
GGCGAGGCGACTGATGCTCAATTAAGTGATGGGTTTGACCCGTCCCCTTC
GACGGGGACATGAGCCTGATGCGCCGCGGGCGCTGGTTTCCCTCTACTTC
GCTTTTGGTGTGTTTTCTCGTGTCGGGAACGTGGCCTCTAGTATCGTGAG
GTGTGTCTCATGCCCTTCGCATGGTGGTCTTTCCCCGTGTGTGACCGTTG
ATAGCAGCTTCGCCTTTTCGCGCTCGCAACCCCATGTCAGAGCTCGTCTT
TCCCCACCACACGCACGCACTGCGCAATCCCAAGTCAGCAGCCCAGGACA
AGCGATATGCGTGCCAGCACGAACTTCACAGCATTCTTCCGTCCCCGATT
GTGTGCAAGTACATTTTCCCCTCACATAATGTACACACTCAGTTGACAGG
TTGTCGCGATTTTTCGGGACGTGGAAGGAGAAGGAAGGAGTTGCAGCAGC
AGCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGCAGCATCAGCAGCAATAG
CAGCGGCGAGCGGGAGGATGGAGCAATTAACGCCCTTCTTGCAGGACAAT
GGCGTGGCAGTGGTCGCGGGCATGTTGGTGGTGTTGACCACCATCGCCAT
TCTGACGCTGCAGAGCCCGCCCAAGAGAAAGAGACCCAGTGGTCCGATTG
CACTGAATCCAGACAATTACGTCGCTTACAAGCTGATCGAGCGTGAGGAG
CTGACACACAACACTCGCCGCTTCCGCTTCGCCCTTCCTAGTGCTAAGCA
TGTCTTGGGCCTGCCAGTGGGACAGCACATCTCGCTTAAATACACGGACA
AGGATGGCAAAGACGTGTCACGGTCCTACACTCCCGTCTCCTCAGACGAC
GATTTGGGCTACGTGGATTTTTGCATTAAGGTGTATTTCGCCAACACCCA
TCCCAAGTTCCCAGAGGGAGGGAAGATGAGCCAGCACCTGGAGTCCCTCA
AGCTCGGCGACTCTATCCTCATGCGCGGACCCAAGGGCTCGCTCACTTAC
AACGGTCGCGGTTTATTCGCTATTAAGAGCCGGGGGGTCGTCACCCACAA
GAAGGTCTCTCAAGTAGGAATGATCGCGGGGGGGACGGGCATCACTCCCA
TGCTTCAGATCTTGCGGGAGATGCTCAAGGACACGGGCGATAAGACAAAG
GTCTGGCTTCTGTATGCCAACCAGACCGAGAATGATATGCTCCTGCAGGA
GGAGTTGGATGATATCGCGCAGAAGCACCCGGACAGATTCCAGCTCTACA
ACACGTTGGACAGACCTCCCACCAAGTGGAAGCAGGGCATCGGATTCATA
ACACCCGAGATGGTCAAGGATCACCAACCCCCCCCCTCCTCCTCCTCCTT
CTACCTTGTCTGTGGACCCCCGCCTATGATCAAACTCGCCGTCATTCCTT
CCTATGAGAAATGCGGTATCCGAGAAGGGCAGTACTTTACTTATTAAATA
AAACAGGGCAGTGATTTGCTTACTTCAAAAGGAGAGAGGGAGGGAGAGAA
CGAAGGAGAGACAAAGGAAGGGAGACGACTGGTCGAGTACATTTACCGGA
AAGGGGGTAGAGGGAGGACAGCGAGGACGATGACGAAGACGAGAATAAGG
AGAATGAGAGAAAGAGAGCGAGAAGAGAGTTCCTTAGGGGAGGTAAAGGG
AATGATGGGTGAGTTGGCATTTGCTTCCCTATACATTTACTTGACATATT
GACGTGGGAAGGAAGAAATTAAAGAAGAGGATTGGTGCAAGAGAGAGAAG
CGATATCGACGCTACCCGACAAACGGGAGGAAGAGTACGAGATGAAGGAG
CATAACTCGAGGTGGGTGAGTACCCACAAGCTTCTCACAGACATGGACAT
GATCGACCCACCTTTTCTATAATTTTCCCTGGACCTCAATTCCAAACAGA
GGGGGGGTCTGAAGAAGGGAGGTGAGAAGTCCCCAAAAGAAAGAATCAAA
CAAAAACACGACGGCCGCCA
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protein sequence of NO21G02360.1

>NO21G02360.1-protein ID=NO21G02360.1-protein|Name=NO21G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MEQLTPFLQDNGVAVVAGMLVVLTTIAILTLQSPPKRKRPSGPIALNPDN
YVAYKLIEREELTHNTRRFRFALPSAKHVLGLPVGQHISLKYTDKDGKDV
SRSYTPVSSDDDLGYVDFCIKVYFANTHPKFPEGGKMSQHLESLKLGDSI
LMRGPKGSLTYNGRGLFAIKSRGVVTHKKVSQVGMIAGGTGITPMLQILR
EMLKDTGDKTKVWLLYANQTENDMLLQEELDDIAQKHPDRFQLYNTLDRP
PTKWKQGIGFITPEMVKDHQPPPSSSSFYLVCGPPPMIKLAVIPSYEKCG
IREGQYFTY*
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mRNA from alignment at chr21:708790..712466+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02360.1 ID=NO21G02360.1|Name=NO21G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=3677bp|location=Sequence derived from alignment at chr21:708790..712466+ (Nannochloropsis oceanica)
GTTTGTTCTATTTACTGGGGAGAATAAGCTTTCTCGTGGAGTCCATAGAT
AGTGTGCTGGCTACGTAGGGCTTTCCAAAGCAATCATCTCATAACATTCT
TCTTAAAGCCTCCGCTTCTGGAAGAGCATGCATTCATGGGACACTGAGAG
GACCGACAAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCACGGCGCAC
GGCGAGGCGACTGATGCTCAATTAAGTGATGGGTTTGACCCGTCCCCTTC
GACGGGGACATGAGCCTGATGCGCCGCGGGCGCTGGTTTCCCTCTACTTC
GCTTTTGGTGTGTTTTCTCGTGTCGGGAACGTGGCCTCTAGTATCGTGAG
GTGTGTCTCATGCCCTTCGCATGGTGGTCTTTCCCCGTGTGTGACCGTTG
ATAGCAGCTTCGCCTTTTCGCGCTCGCAACCCCATGTCAGAGCTCGTCTT
TCCCCACCACACGCACGCACTGCGCAATCCCAAGTCAGCAGCCCAGGACA
AGCGATATGCGTGCCAGCACGAACTTCACAGCATTCTTCCGTCCCCGATT
GTGTGCAAGTACATTTTCCCCTCACATAATGTACACACTCAGTTGACAGG
TTGTCGCGATTTTTCGGGACGTGGAAGGAGAAGGAAGGAGTTGCAGCAGC
AGCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGCAGCATCAGCAGCAATAG
CAGCGGCGAGCGGGAGGATGGAGCAATTAACGCCCTTCTTGCAGGTGCGT
GGAGTATGAAGAGGAGGAAAAGAAGGGGAGGGATGGACAAAGGACATAAA
GGCTCCTCCATAAGAGGCTTGGACCACATGCCATTCGATCCTTTCCGTCA
AGAGTCGTCACCCACTCAATCCTTCCACCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTTCTCCCTTGTAGGACAATGGCGTGGCAGTGGTCGCGG
GCATGTTGGTGGTGTTGACCACCATCGCCATTCTGACGCTGCAGAGGTGA
GGGGGACGAGAGGGAGGGAGGAAGGGGAAGAAGAGAGGGAGGGAGATTGG
AAGCCGCTATCCGAAGACAGGCAGGGATATCGAAAGGCCCATGAAAGCGT
TAGTCTGGCACTTGCACCCACCTCCTTCCCTCCTTCCCTCCATTTCTCCC
TCCCTCCCTCCCTCCCTCCCTCCAGCCCGCCCAAGAGAAAGAGACCCAGT
GGTCCGATTGCACTGAATCCAGACAATTACGTCGCTTACAAGGTAGGGAG
GCATAGGAGGGGAGAAGGGGGGAAGGAGAAAAGAGAAGGAAAGGATCAGA
ACGACATCGTTCTAACTTCTCCCTTCCTCCCTCCCTCCCTACCTCCCCTC
CCTCAGCTGATCGAGCGTGAGGAGCTGACACACAACACTCGCCGCTTCCG
CTTCGCCCTTCCTAGTGCTAAGCATGTCTTGGGCCTGCCAGTGGGACAGC
ACATCTCGCTTAAATACACGGACAAGGATGGCAAAGACGTGTCACGGTGC
GGGAGGGACCGAGGGATGGAGGGACCGACGGACGGACTGACGGACGCCCA
CGATCATTCCAACCCGCTTTGCCAAGCCCATGCCGCTAGCTGACATAGTG
CACCATATATTCCTCCCTCCCTCCCTCCCTTTCTCAGGTCCTACACTCCC
GTCTCCTCAGACGACGATTTGGGCTACGTGGATTTTTGCATTAAGGTGTA
TTTCGCCAACACCCATCCCAAGTTCCCAGAGGGAGGGAAGATGAGCCAGC
ACCTGGAGTCCCTCAAGCTCGGTACGTCCTCTCCCTCCCTTCCTCCCCCC
CTCCCTCCCTCCCTTCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCTCGCTTGTACCAAGTCCCCACCCTCTCTTTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCACTCCCTCCCTCAGGCGACTCTAT
CCTCATGCGCGGACCCAAGGGCTCGCTCACTTACAACGGTCGCGGTTTAT
TCGCTATTAAGAGCCGGGGGGTCGTCACCCACAAGAAGGTATACCCTTCC
GCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTTCTCATCATCGTCTCAA
TCTCCTCACGCCCGTCAGAATGACACCCATTCCCCCCGTACAATCTCTTC
CCAAAAAGAAACTCACCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGTCTTTCAAGGT
CTCTCAAGTAGGAATGATCGCGGGGGGGACGGGCATCACTCCCATGCTTC
AGATCTTGCGGGAGATGCTCAAGGACACGGGCGATAAGACAAAGGTACGG
AGTGAGGGAGGGAGTGAGGGAGGGAGGGAGGGGCGAGAAGAAAGTCTGTA
AAACACAATACAACCATTTACTACCTACCTACCTCCCTCCCTCCCTCCCT
CCATCCCTCCCTCAGGTCTGGCTTCTGTATGCCAACCAGACCGAGAATGA
TATGCTCCTGCAGGAGGAGTTGGATGATATCGCGCAGAAGCACCCGGACA
GATTCCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAAA
ATGGTTGAATCATTCCACAGTCTAATCCATGTCGTATCTCCTCCACAATC
CATCCACCTTATCCCTCCCTCCCCATCACTCTTTTCCCCCCTCCCCATCA
CTCTTTTCCTCCCTCCTCATCACTCCCTCCCTTTGCAGCTCTACAACACG
TTGGACAGACCTCCCACCAAGTGGAAGCAGGGCATCGGATTCATAACACC
CGAGATGGTCAAGGTACCTCCCCTCCCCTCCTTTCTCCCTCCCTTCCTCC
CTTCCTTTGGAACTGGACTTGGTCGTCAAACTTTTGCTTCTCCCTCCCTC
CCTCCCTTCCTCCCCTCCCTTCCCCCCTGTTTCTCGTTCCCTTATTTCTC
AAACCACCACCGCCATGCTCACCCTCCCTCCCTCCCTTCCTTCCTCCCTC
CCTCCCTCGCTCCCTCCCCCTCCAGGATCACCAACCCCCCCCCTCCTCCT
CCTCCTTCTACCTTGTCTGTGGACCCCCGCCTATGATCAAACTCGCCGTC
ATTCCTTCCTATGAGAAATGCGGTATCCGAGAAGGGCAGTACTTTACTTA
TTAAATAAAACAGGGCAGTGATTTGCTTACTTCAAAAGGAGAGAGGGAGG
GAGAGAACGAAGGAGAGACAAAGGAAGGGAGACGACTGGTCGAGTACATT
TACCGGAAAGGGGGTAGAGGGAGGACAGCGAGGACGATGACGAAGACGAG
AATAAGGAGAATGAGAGAAAGAGAGCGAGAAGAGAGTTCCTTAGGGGAGG
TAAAGGGAATGATGGGTGAGTTGGCATTTGCTTCCCTATACATTTACTTG
ACATATTGACGTGGGAAGGAAGAAATTAAAGAAGAGGATTGGTGCAAGAG
AGAGAAGCGATATCGACGCTACCCGACAAACGGGAGGAAGAGTACGAGAT
GAAGGAGCATAACTCGAGGTGGGTGAGTACCCACAAGCTTCTCACAGACA
TGGACATGATCGACCCACCTTTTCTATAATTTTCCCTGGACCTCAATTCC
AAACAGAGGGGGGGTCTGAAGAAGGGAGGTGAGAAGTCCCCAAAAGAAAG
AATCAAACAAAAACACGACGGCCGCCA
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Coding sequence (CDS) from alignment at chr21:708790..712466+

>NO21G02360.1 ID=NO21G02360.1|Name=NO21G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr21:708790..712466+ (Nannochloropsis oceanica)
ATGGAGCAATTAACGCCCTTCTTGCAGGACAATGGCGTGGCAGTGGTCGC
GGGCATGTTGGTGGTGTTGACCACCATCGCCATTCTGACGCTGCAGAGCC
CGCCCAAGAGAAAGAGACCCAGTGGTCCGATTGCACTGAATCCAGACAAT
TACGTCGCTTACAAGCTGATCGAGCGTGAGGAGCTGACACACAACACTCG
CCGCTTCCGCTTCGCCCTTCCTAGTGCTAAGCATGTCTTGGGCCTGCCAG
TGGGACAGCACATCTCGCTTAAATACACGGACAAGGATGGCAAAGACGTG
TCACGGTCCTACACTCCCGTCTCCTCAGACGACGATTTGGGCTACGTGGA
TTTTTGCATTAAGGTGTATTTCGCCAACACCCATCCCAAGTTCCCAGAGG
GAGGGAAGATGAGCCAGCACCTGGAGTCCCTCAAGCTCGGCGACTCTATC
CTCATGCGCGGACCCAAGGGCTCGCTCACTTACAACGGTCGCGGTTTATT
CGCTATTAAGAGCCGGGGGGTCGTCACCCACAAGAAGGTCTCTCAAGTAG
GAATGATCGCGGGGGGGACGGGCATCACTCCCATGCTTCAGATCTTGCGG
GAGATGCTCAAGGACACGGGCGATAAGACAAAGGTCTGGCTTCTGTATGC
CAACCAGACCGAGAATGATATGCTCCTGCAGGAGGAGTTGGATGATATCG
CGCAGAAGCACCCGGACAGATTCCAGCTCTACAACACGTTGGACAGACCT
CCCACCAAGTGGAAGCAGGGCATCGGATTCATAACACCCGAGATGGTCAA
GGATCACCAACCCCCCCCCTCCTCCTCCTCCTTCTACCTTGTCTGTGGAC
CCCCGCCTATGATCAAACTCGCCGTCATTCCTTCCTATGAGAAATGCGGT
ATCCGAGAAGGGCAGTACTTTACTTATTAA
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Synonyms
Publications