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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr21 | genome | chr21:699682..702394 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02330.1 vs.
Match: OSX71219.1 (hypothetical protein BU14_0575s0006 [Porphyra umbilicalis]) HSP 1 Score: 173.3 bits (438), Expect = 1.200e-39 Identity = 100/263 (38.02%), Postives = 147/263 (55.89%), Query Frame = 0
Query: 75 EQKEEPAWVRVSVLESRPVAEGLIHVAI------DGGDLMASYSVPGQYVQLKPHAPGAKPGFFAVASPPSVKSGSSRAEFLIKKTENTAWLCEAQAGEVIDMTPAMGKGYKIQSL---------DEEGINFVLLLAAGSGIAPIRAAIESEMLGLKKMSRYS-RLYLGVRSPAHLPYTEKFDAWREKGLEIIPCFSRAPVPMNSSGYW----GYVQQGLAGDDIRRPDKTAALVCGMKDMANLSTHILKQKGVAPERILFNF 318
+++++ W V V+E+ E ++ I + G L+ SY VPGQYVQ+K A AKPGFFA++ P+++ EFLIK+T+ +AW G+ + M+P GKG+ + L +EE + +LL A GSGIAPIRAAIES++ GL+ +R S +LY G R P + Y ++F W +E+IP SR P ++ W GYVQQ L D + P +T L+CG+ M L ++GV +RIL NF
Sbjct: 2 QKQQDTEWNPVEVVENSAACEEHRYIVINVGTTAEKGSLVDSYRVPGQYVQIKADAADAKPGFFAISCAPNIQ---GYFEFLIKETDGSAWFTGTAPGDKVLMSPVGGKGFPMSRLEPIQFPAVPEEEAVKDLLLFATGSGIAPIRAAIESQLNGLRAPTRRSIKLYYGARYPRRMAYMDRFRLWASDKIEVIPVMSR---PTEAADEWDGRTGYVQQALMQDGVAAPKQTGVLMCGVGGMTKDVKAYLMEQGVPEDRILTNF 258
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G02330.1 ID=NO21G02330.1|Name=NO21G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp GAAAAGGAAAGCGAAAGAGTTGCTTAGACGGGACGATGAAAAGGCATTTA TGCTAAAGATATGGCCAAAAACCGTGGCTAGCTGAATAAATATACGCAGC AAGCAAAGCTTGACGCATGGACAAAGACAGGCAGCTTTTGAGAAGGGAGT TTATTGCTTCAGGTGTGAGCAAGGTGATGGGAAAGAGGCTGCTCTTTCGT GGCCTCCTGGCACTCTCCTGATCAGGATGTCCCTCTTTCATGTGCTCAAC ACACACCAAATGAACCAACACACGCTTAACACTCCCTTCGTCTCCTTCCT CTGTTTGTCCTCAGGCCCCTTGCTTCATTTACTCGCCTGTCTCTCCAGCA GAAGCAGCCGCAGCCGCGCCAGTATCCCCATCCAGTCCGCTACTCTCTCC TCCCATCCAACATGGTCCGACCGTCCTCCTCGCCCTTCCTGCTCCTCCTT TTCCTCCTCTTGTCTGCCCTAATAGCCCTTGCAACCGCTGCCAGTGCTTT CGTCCTTGCCCCGTCCCCCTGTTGCCGAAGTGTGAGCCACAGCGGTAAGA GCATTAGAAGACACCTAGCGGCCAGCAGCAGCGGTGGGGAAAAGAAGGTC AAAGCTGCCACAGCAGCCGCATCGAAGAAAGAGGAGCAGAAGGAGGAGCC GGCATGGGTGCGTGTGTCCGTGTTAGAATCACGACCGGTGGCGGAGGGAT TAATTCATGTCGCGATCGACGGAGGGGACTTGATGGCATCCTATTCGGTG CCAGGGCAGTACGTCCAGCTGAAACCCCATGCCCCTGGTGCCAAGCCCGG CTTCTTCGCCGTGGCGTCACCCCCGTCCGTTAAGAGCGGGAGCAGCCGGG CAGAATTTCTGATCAAGAAGACGGAGAACACGGCGTGGTTGTGTGAGGCG CAAGCGGGGGAGGTCATCGACATGACTCCCGCCATGGGAAAGGGATATAA AATCCAGTCCCTGGACGAGGAGGGGATTAACTTTGTCCTCCTCCTGGCGG CTGGGAGTGGGATAGCCCCCATCCGCGCTGCGATTGAGAGTGAGATGCTG GGTTTGAAGAAGATGTCGCGCTACTCCCGCCTCTATCTGGGAGTCCGCTC GCCCGCCCACCTTCCTTACACGGAGAAATTCGACGCGTGGCGCGAAAAGG GTCTGGAAATAATCCCATGCTTCTCCCGCGCGCCCGTGCCCATGAATTCA TCCGGGTATTGGGGCTACGTACAGCAAGGCCTTGCCGGCGATGATATTCG AAGGCCGGACAAAACCGCGGCGCTGGTGTGCGGGATGAAGGACATGGCCA ACCTCTCGACTCATATCTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAATT TTGTTCAACTTCTAGAAGAAAGGAAAGTAGGGAGTGGGAAAGAGGGGGGG AAGGAAGGAAGGAGGAAGGAGAGGGGGAAGTAGGCATGGAAACAAGGAAA AATATAATTTTTAAAAAACGCTGCCTCCTGCAGTCCCACGCATCATCTCT CAATAACGTATACCTGTAGATATACTCATATACACTCTTATAAATGTATA TAAACTTCCAGATGTATGCATATTGATGTTAAAGCCAGTGTGTTCTGGCA AGAAATGTCTTCAGCGGATCGCTCTCGGAGGAGTTCTATACATTGTCTGT TTAATTTTAATTTTAATTTCAAATCCCCGTTTGTGGACAGTTAAAGACTT CCTCATGGCCAGACGTACTCCAAGAGCCTGCCTTTGTCTTGGCCTGACGC GTATCACACTGCTCATGGTATCGTAGGGAGGGTCTTTACTCTATAGGCTG GCTCGGCTTCGACCGTTAGATGACCGTGGAAGGCAACCCAAGCTTCCTCA TGGCCTGACCACAACCTA back to topprotein sequence of NO21G02330.1 >NO21G02330.1-protein ID=NO21G02330.1-protein|Name=NO21G02330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp MVRPSSSPFLLLLFLLLSALIALATAASAFVLAPSPCCRSVSHSGKSIRR HLAASSSGGEKKVKAATAAASKKEEQKEEPAWVRVSVLESRPVAEGLIHV AIDGGDLMASYSVPGQYVQLKPHAPGAKPGFFAVASPPSVKSGSSRAEFL IKKTENTAWLCEAQAGEVIDMTPAMGKGYKIQSLDEEGINFVLLLAAGSG IAPIRAAIESEMLGLKKMSRYSRLYLGVRSPAHLPYTEKFDAWREKGLEI IPCFSRAPVPMNSSGYWGYVQQGLAGDDIRRPDKTAALVCGMKDMANLST HILKQKGVAPERILFNF* back to topmRNA from alignment at chr21:699682..702394+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G02330.1 ID=NO21G02330.1|Name=NO21G02330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2713bp|location=Sequence derived from alignment at chr21:699682..702394+ (Nannochloropsis oceanica) GAAAAGGAAAGCGAAAGAGTTGCTTAGACGGGACGATGAAAAGGCATTTA
TGCTAAAGATATGGCCAAAAACCGTGGCTAGCTGAATAAATATACGCAGC
AAGCAAAGCTTGACGCATGGACAAAGACAGGCAGCTTTTGAGAAGGGAGT
TTATTGCTTCAGGTGTGAGCAAGGTGATGGGAAAGAGGCTGCTCTTTCGT
GGCCTCCTGGCACTCTCCTGATCAGGATGTCCCTCTTTCATGTGCTCAAC
ACACACCAAATGAACCAACACACGCTTAACACTCCCTTCGTCTCCTTCCT
CTGTTTGTCCTCAGGCCCCTTGCTTCATTTACTCGCCTGTCTCTCCAGCA
GAAGCAGCCGCAGCCGCGCCAGTATCCCCATCCAGTCCGCTACTCTCTCC
TCCCATCCAACATGGTCCGACCGTCCTCCTCGCCCTTCCTGCTCCTCCTT
TTCCTCCTCTTGTCTGCCCTAATAGCCCTTGCAACCGCTGCCAGTGCTTT
CGTCCTTGCCCCGTCCCCCTGTTGCCGAAGTGTGAGCCACAGGTACGTCA
ATTGGGTGAAGAAAATGGGAAGCGAGGCAGGGAGGGGAGGCTGGATCCCT
CCCATTACCATCATCGATAGATACCCCAATTCCTCCCTCCCGTCCTCCCT
TCCTTTCTTCCTTCGTCTTACACAGCGGTAAGAGCATTAGAAGACACCTA
GCGGCCAGCAGCAGCGGTGGGGAAAAGAAGGTCAAAGCTGCCACAGCAGC
CGCATCGAAGAAAGAGGAGCAGAAGGAGGAGCCGGCATGGGTGCGTGTGT
CCGTGTTAGAATCACGACCGGTGGCGGAGGGATTAATTCATGTCGCGATC
GACGGAGGGGACTTGATGGCATCCTATTCGGTGCCAGGGCAGGTAGGGAG
GGAGGGAGGGAGGGAGGAAGGGAGGGATCGAGAGAGGGAGGGGGGGTAGC
GAGGGTAGCGAGGGAGGGGGGGAAGGAGGGAGGGCGTGTGCAAGGCATAG
AGGGAGGTTGATTTTCAAAAAATAAATAAACTCAATCGAAATATTCCCCT
TCCTCGTCCTCCTTCCACCCTTTCCGAAGTACGTCCAGCTGAAACCCCAT
GCCCCTGGTGCCAAGCCCGGCTTCTTCGCCGTGGCGTCACCCCCGTCCGT
TAAGAGCGGGAGCAGCCGGGCAGAATTTCTGATCAAGAAGACGGAGAACA
CGGCGTGGTTGTGTGAGGCGCAAGCGGGGGAGGTGAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGAGGGGAAGGAGGGAGGGAGGGAGGGAGAAATGTGA
TCTCCACACGTCGAGCACGTCGTACCTTCACGTATGTCTCTTCCCATCCC
TACCCATCAATCCACCCTCCTTATCTCCACACTCACTCCTCGTACAATGC
ATTTCGTAGGTCATCGACATGACTCCCGCCATGGGAAAGGGATATAAAAT
CCAGTCCCTGGACGAGGAGGGGATTAACTTTGTCCTCCTCCTGGCGGCTG
GGAGTGGGATAGCCCCCATCCGCGCTGCGATTGAGAGTGAGATGCTGGGT
TTGAAGAAGGTACGTGCCCTCCCTCCCTCCCTCCTTTCCTTCTTTCCCTT
CCTTCCTTCCTGCCTTCCTCTTTTATCCACTAGAGATGGCGCTACTTATT
CACGGACCTCCCTCCTTCCCTCCACCCGACGTACCGACCAACCTCCCTCC
CTCTCTGCCTGCCTCCCTTTCTCCCTCCCTCCCTTCCCCCTCCCTCCGTG
CAGATGTCGCGCTACTCCCGCCTCTATCTGGGAGTCCGCTCGCCCGCCCA
CCTTCCTTACACGGAGAAATTCGACGCGTGGCGCGAAAAGGGTCTGGAAA
TAATCCCATGCTTCTCCCGCGCGCCCGTGCCCATGAATTCATCCGGGTAT
TGGGGTACGTACTCACTCACTCACTTCCTCCCTCCCTCCCTTTCTATCAA
AGCCTGTGAGTCCATGCCAGAGATTACCTCCAAATCACCTTGGTGTTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTCG
TTTCTCAGGCTACGTACAGCAAGGCCTTGCCGGCGATGATATTCGAAGGC
CGGACAAAACCGCGGCGCTGGTGTGCGGGATGAAGGACATGGCCAACCTC
TCGACTCATATCTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAATTTTGTT
CAACTTCTAGAAGAAAGGAAAGTAGGGAGTGGGAAAGAGGGGGGGAAGGA
AGGAAGGAGGAAGGAGAGGGGGAAGTAGGCATGGAAACAAGGAAAAATAT
AATTTTTAAAAAACGCTGCCTCCTGCAGTCCCACGCATCATCTCTCAATA
ACGTATACCTGTAGATATACTCATATACACTCTTATAAATGTATATAAAC
TTCCAGATGTATGCATATTGATGTTAAAGCCAGTGTGTTCTGGCAAGAAA
TGTCTTCAGCGGATCGCTCTCGGAGGAGTTCTATACATTGTCTGTTTAAT
TTTAATTTTAATTTCAAATCCCCGTTTGTGGACAGTTAAAGACTTCCTCA
TGGCCAGACGTACTCCAAGAGCCTGCCTTTGTCTTGGCCTGACGCGTATC
ACACTGCTCATGGTATCGTAGGGAGGGTCTTTACTCTATAGGCTGGCTCG
GCTTCGACCGTTAGATGACCGTGGAAGGCAACCCAAGCTTCCTCATGGCC
TGACCACAACCTA back to topCoding sequence (CDS) from alignment at chr21:699682..702394+ >NO21G02330.1 ID=NO21G02330.1|Name=NO21G02330.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr21:699682..702394+ (Nannochloropsis oceanica) ATGGTCCGACCGTCCTCCTCGCCCTTCCTGCTCCTCCTTTTCCTCCTCTT GTCTGCCCTAATAGCCCTTGCAACCGCTGCCAGTGCTTTCGTCCTTGCCC CGTCCCCCTGTTGCCGAAGTGTGAGCCACAGCGGTAAGAGCATTAGAAGA CACCTAGCGGCCAGCAGCAGCGGTGGGGAAAAGAAGGTCAAAGCTGCCAC AGCAGCCGCATCGAAGAAAGAGGAGCAGAAGGAGGAGCCGGCATGGGTGC GTGTGTCCGTGTTAGAATCACGACCGGTGGCGGAGGGATTAATTCATGTC GCGATCGACGGAGGGGACTTGATGGCATCCTATTCGGTGCCAGGGCAGTA CGTCCAGCTGAAACCCCATGCCCCTGGTGCCAAGCCCGGCTTCTTCGCCG TGGCGTCACCCCCGTCCGTTAAGAGCGGGAGCAGCCGGGCAGAATTTCTG ATCAAGAAGACGGAGAACACGGCGTGGTTGTGTGAGGCGCAAGCGGGGGA GGTCATCGACATGACTCCCGCCATGGGAAAGGGATATAAAATCCAGTCCC TGGACGAGGAGGGGATTAACTTTGTCCTCCTCCTGGCGGCTGGGAGTGGG ATAGCCCCCATCCGCGCTGCGATTGAGAGTGAGATGCTGGGTTTGAAGAA GATGTCGCGCTACTCCCGCCTCTATCTGGGAGTCCGCTCGCCCGCCCACC TTCCTTACACGGAGAAATTCGACGCGTGGCGCGAAAAGGGTCTGGAAATA ATCCCATGCTTCTCCCGCGCGCCCGTGCCCATGAATTCATCCGGGTATTG GGGCTACGTACAGCAAGGCCTTGCCGGCGATGATATTCGAAGGCCGGACA AAACCGCGGCGCTGGTGTGCGGGATGAAGGACATGGCCAACCTCTCGACT CATATCTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAATTTTGTTCAACTT CTAG back to top
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