NO21G02050.1, NO21G02050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02050.1
Unique NameNO21G02050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2104
Alignment locationchr21:604562..606778 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:604562..606778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02050.1 vs.
Match: EWM22709.1 (fad dependent oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 247.7 bits (631), Expect = 7.300e-62
Identity = 148/307 (48.21%), Postives = 189/307 (61.56%), Query Frame = 0 
Query:   10 LHRFATATATATPLFLTPRAPTHIRMMS-------LSSSSASSTTTATSNTTPPPLNIAIIGAGIAGLSCARVLLQAHPTPRITLFEKSTTHGRCATRDVPGIGSFDHGAPHFSALSPEFQAQVQQWQEEGLVMP----ASSSSSSPSLWPGHYVVHPSMRSLPTHLAQGLSIQRPFLITKLE-MKETKNQQQEQDRCAATTTTTTTTTTSDSTTTYNSNNNDNNKRGQWILHHDDGKITQKFDAVVVAVPAEQSIPLLEPVSPALAAPLIDVKSASCLSVMAAWDQPVGAPFTEWKKAKAEEKGED 305
            LH  +   AT  P  L+PR       ++       ++SS++ S      NT P    +AIIGAGIAGL+CAR LL + PT R++LFEKST+HGRCATR V GIG+FDHGAPHFSA SP F+ QVQ W+E GLV+P     SSS S+ +     YVVHPSMR+LPTHLA+GL++ RP LI KLE +++ + Q   Q++ A ++                        +G W LHHD   + + FDAVVVAVPAEQS  LL PVSP LA+ L  V+S  CLSV+ AWD P GAP++EW    A+  GED
Sbjct:    7 LHPLSATVATTAPFLLSPRITATFSTLTRANSLPRMASSASFSIENDGGNTAP---KVAIIGAGIAGLTCARTLLTSCPTARVSLFEKSTSHGRCATRTVRGIGNFDHGAPHFSAFSPAFREQVQTWREAGLVVPLSPFTSSSDSTSAAATARYVVHPSMRTLPTHLAEGLAVHRPLLIAKLEYIRKAQGQDASQEQSAPSSPP--------------------GHQGGWALHHDQSTVPEVFDAVVVAVPAEQSCALLSPVSPGLASLLAPVRSRPCLSVLVAWDGPTGAPWSEW---TADMDGED 287
The following BLAST results are available for this feature:
BLAST of NO21G02050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22709.17.300e-6248.21fad dependent oxidoreductase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02050NO21G02050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02050.1NO21G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02050.1.cds1NO21G02050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02050.1.cds2NO21G02050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02050.1 ID=NO21G02050.1|Name=NO21G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2104bp
ACTGAAATCAAGCTGTTTCATGCTTTTATCCCTCCTTTTCTTTCTGAGTG
TCTGTCTTTCGTTGATATTACGAGTATCAATTTATTCATTTATTACTCTG
CCGCCCACTTTTTCCTGTCAATGTGGTAGGTCGAGTGGAAAGGGAGGGAA
GGAAGATGGGAACTGGCAACGGTTGGCGACGTGCTCTGTACAACGGCACC
GCTCTGAAGCAAGGCAAATTGAGTGTGGCCCAGCCCAGCCCACAAAACGA
TGGAAAGGGTTAATACTGTTTCTTAAGTCGGGGGATAGACTGGGCTTGGG
GCACGAACCTGAAGAGGTATTGGTTTGAATGGAGATATCAACTTACTGCT
TGATTGGTTTGAATGGAGATATCAATTTACTGCTTGAGGGCTACTTGGGT
GGGGCATGCTGCTGCAGCTCCCCCACAGCCATGCGTAGGAAGGCCAGGTG
GATACTTGGAAAATGGAGTTAACGCCCTAAAAATCTCTTTTTTCCCTTCC
AAATGGCAGGGGCGGCACAGCCAGCAAGTATGCCAGCAGTTTCATCGTTG
TCATGCTGATGCAGACCACTCTTTCCTTCCTACACCGCTTCGCCACTGCC
ACCGCTACCGCCACGCCCCTCTTCTTAACCCCCCGAGCACCCACACATAT
ACGGATGATGTCTCTCTCGTCTTCCTCCGCCTCCTCTACCACCACCGCTA
CAAGTAACACTACCCCCCCTCCCCTTAACATTGCCATAATTGGTGCGGGT
ATCGCCGGCCTAAGCTGCGCTCGTGTCCTGCTCCAAGCCCATCCCACCCC
TCGCATTACCCTCTTTGAGAAAAGCACCACCCACGGTCGTTGCGCCACAC
GAGACGTCCCGGGCATTGGTTCCTTCGACCACGGCGCTCCTCATTTCTCT
GCGCTCTCTCCAGAATTCCAAGCGCAAGTCCAGCAATGGCAGGAGGAGGG
GTTGGTTATGCCTGCATCGTCTTCGTCGTCGTCACCGTCGTTGTGGCCTG
GTCACTATGTGGTCCATCCAAGCATGCGTTCTCTTCCCACGCATCTCGCC
CAAGGGTTGTCCATTCAACGGCCTTTTCTCATCACCAAACTGGAGATGAA
AGAGACAAAAAACCAGCAGCAAGAGCAAGACAGGTGCGCAGCCACCACCA
CCACCACCACCACCACCACCACCAGCGACAGCACCACCACCTACAACAGC
AACAACAATGACAACAACAAAAGAGGGCAATGGATCCTCCACCACGATGA
CGGCAAAATCACGCAAAAATTTGACGCTGTGGTCGTTGCCGTTCCAGCCG
AGCAAAGCATCCCCTTGCTTGAACCGGTATCTCCTGCACTGGCAGCACCT
TTGATTGATGTCAAGAGTGCGTCCTGTCTGAGCGTGATGGCTGCATGGGA
TCAACCTGTCGGTGCTCCTTTTACCGAGTGGAAGAAAGCAAAGGCGGAGG
AGAAGGGAGAGGACGAAGGTATCCTCTACAGCGCCCGCCGGGACGATCTG
AAAACCCCAGGCCGCCCTGGGGGGGAGGGGGGAAAGGAGGGAGGGGGGGA
GCGGTGGGTGATGCACGCGACTCCAGCGTTCTCTGCTAGTCATATCCAGA
CGGAGCCTTTCCCGAAAGAGAAAGTCATATTGAATGTGTTGGATGCGTTT
TTCAAAGAGGTGGAGAGAGGGAAGGAGGGAGAGAGAGAGGGAGGGAAGAA
AGACATGGGGGAGGAAAGGGCGCCCAGGCCTGTTTATTTGTCAGTACAAC
GGTGGCTCTACGCACAGACGTTTAATCCCTCCGAGGAACCGTTTGGATGG
GAGGAGAGAGAGAAGGTGGGGGCTTGTGGGGATGGTTGGCAAGGAAGGAG
GGAGGGAGGGGAGGAGGAGGAGGGGAAAGGGGGAATCGAGAGGGCATGGC
TGAGTGGGAGGAGGTTAGGAGAAGCGATGCTGGTGTCGTTGGGTCTAAGG
AAGGAGGAAAAGTGAAATCTGAAACAAAAATATGTGTCCCGACCGAGGAG
GATTGCGAAGGGAAGGAAGAGGGAGGAGCCGGTTTTTTTTAAAATCAAAA
AATAGGCAAAATGACCTCAAGCTTTGAAAAGGCAAGGAAGAAGCAAGCAA
GCAA
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protein sequence of NO21G02050.1

>NO21G02050.1-protein ID=NO21G02050.1-protein|Name=NO21G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MLMQTTLSFLHRFATATATATPLFLTPRAPTHIRMMSLSSSSASSTTTAT
SNTTPPPLNIAIIGAGIAGLSCARVLLQAHPTPRITLFEKSTTHGRCATR
DVPGIGSFDHGAPHFSALSPEFQAQVQQWQEEGLVMPASSSSSSPSLWPG
HYVVHPSMRSLPTHLAQGLSIQRPFLITKLEMKETKNQQQEQDRCAATTT
TTTTTTTSDSTTTYNSNNNDNNKRGQWILHHDDGKITQKFDAVVVAVPAE
QSIPLLEPVSPALAAPLIDVKSASCLSVMAAWDQPVGAPFTEWKKAKAEE
KGEDEGILYSARRDDLKTPGRPGGEGGKEGGGERWVMHATPAFSASHIQT
EPFPKEKVILNVLDAFFKEVERGKEGEREGGKKDMGEERAPRPVYLSVQR
WLYAQTFNPSEEPFGWEEREKVGACGDGWQGRREGGEEEEGKGGIERAWL
SGRRLGEAMLVSLGLRKEEK*
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mRNA from alignment at chr21:604562..606778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02050.1 ID=NO21G02050.1|Name=NO21G02050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2217bp|location=Sequence derived from alignment at chr21:604562..606778- (Nannochloropsis oceanica)
ACTGAAATCAAGCTGTTTCATGCTTTTATCCCTCCTTTTCTTTCTGAGTG
TCTGTCTTTCGTTGATATTACGAGTATCAATTTATTCATTTATTACTCTG
CCGCCCACTTTTTCCTGTCAATGTGGTAGGTCGAGTGGAAAGGGAGGGAA
GGAAGATGGGAACTGGCAACGGTTGGCGACGTGCTCTGTACAACGGCACC
GCTCTGAAGCAAGGCAAATTGAGTGTGGCCCAGCCCAGCCCACAAAACGA
TGGAAAGGGTTAATACTGTTTCTTAAGTCGGGGGATAGACTGGGCTTGGG
GCACGAACCTGAAGAGGTATTGGTTTGAATGGAGATATCAACTTACTGCT
TGATTGGTTTGAATGGAGATATCAATTTACTGCTTGAGGGCTACTTGGGT
GGGGCATGCTGCTGCAGCTCCCCCACAGCCATGCGTAGGAAGGCCAGGTG
GATACTTGGAAAATGGAGTTAACGCCCTAAAAATCTCTTTTTTCCCTTCC
AAATGGCAGGGGCGGCACAGCCAGCAAGTATGCCAGCAGTTTCATCGTTG
TCATGCTGATGCAGACCACTCTTTCCTTCCTACACCGCTTCGCCACTGCC
ACCGCTACCGCCACGCCCCTCTTCTTAACCCCCCGAGCACCCACACATAT
ACGGATGATGTCTCTCTCGTCTTCCTCCGCCTCCTCTACCACCACCGCTA
CAAGTAACACTACCCCCCCTCCCCTTAACATTGCCATAATTGGTGCGGGT
ATCGCCGGCCTAAGCTGCGCTCGTGTCCTGCTCCAAGCCCATCCCACCCC
TCGCATTACCCTCTTTGAGAAAAGCACCACCCACGGTCGTTGCGCCACAC
GAGACGTCCCGGGCATTGGTTCCTTCGACCACGGCGCTCCTCATTTCTCT
GCGCTCTCTCCAGAATTCCAAGCGCAAGTCCAGCAATGGCAGGAGGAGGG
GTTGGTTATGCCTGCATCGTCTTCGTCGTCGTCACCGTCGTTGTGGCCTG
GTCACTATGTGGTCCATCCAAGCATGCGTTCTCTTCCCACGCATCTCGCC
CAAGGGTTGTCCATTCAACGGCCTTTTCTCATCACCAAACTGGAGATGAA
AGAGACAAAAAACCAGCAGCAAGAGCAAGACAGGTGCGCAGCCACCACCA
CCACCACCACCACCACCACCACCAGCGACAGCACCACCACCTACAACAGC
AACAACAATGACAACAACAAAAGAGGGCAATGGATCCTCCACCACGATGA
CGGCAAAATCACGCAAAAATTTGACGCTGTGGTCGTTGCCGTTCCAGCCG
AGCAAAGCATCCCCTTGCTTGAACCGGTATCTCCTGCACTGGCAGCACCT
TTGATTGATGTCAAGAGTGCGTCCTGTCTGAGCGTGATGGCTGCATGGGA
TCAACCTGTCGGTGCTCCTTTTACCGAGTGGAAGAAAGCAAAGGCGGAGG
AGAAGGGAGAGGACGAAGGGTACGTGCGTTGTCCCCTTCCCCTACCCCCA
CTTTATTTCCTCCTTAAGATTTTCACCAACAGTTTTCCTCTGTAATCCCC
CCCAAAATTCCAACCCTCCCTCCCTCCCACAGTATCCTCTACAGCGCCCG
CCGGGACGATCTGAAAACCCCAGGCCGCCCTGGGGGGGAGGGGGGAAAGG
AGGGAGGGGGGGAGCGGTGGGTGATGCACGCGACTCCAGCGTTCTCTGCT
AGTCATATCCAGACGGAGCCTTTCCCGAAAGAGAAAGTCATATTGAATGT
GTTGGATGCGTTTTTCAAAGAGGTGGAGAGAGGGAAGGAGGGAGAGAGAG
AGGGAGGGAAGAAAGACATGGGGGAGGAAAGGGCGCCCAGGCCTGTTTAT
TTGTCAGTACAACGGTGGCTCTACGCACAGACGTTTAATCCCTCCGAGGA
ACCGTTTGGATGGGAGGAGAGAGAGAAGGTGGGGGCTTGTGGGGATGGTT
GGCAAGGAAGGAGGGAGGGAGGGGAGGAGGAGGAGGGGAAAGGGGGAATC
GAGAGGGCATGGCTGAGTGGGAGGAGGTTAGGAGAAGCGATGCTGGTGTC
GTTGGGTCTAAGGAAGGAGGAAAAGTGAAATCTGAAACAAAAATATGTGT
CCCGACCGAGGAGGATTGCGAAGGGAAGGAAGAGGGAGGAGCCGGTTTTT
TTTAAAATCAAAAAATAGGCAAAATGACCTCAAGCTTTGAAAAGGCAAGG
AAGAAGCAAGCAAGCAA
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Coding sequence (CDS) from alignment at chr21:604562..606778-

>NO21G02050.1 ID=NO21G02050.1|Name=NO21G02050.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr21:604562..606778- (Nannochloropsis oceanica)
ATGCTGATGCAGACCACTCTTTCCTTCCTACACCGCTTCGCCACTGCCAC
CGCTACCGCCACGCCCCTCTTCTTAACCCCCCGAGCACCCACACATATAC
GGATGATGTCTCTCTCGTCTTCCTCCGCCTCCTCTACCACCACCGCTACA
AGTAACACTACCCCCCCTCCCCTTAACATTGCCATAATTGGTGCGGGTAT
CGCCGGCCTAAGCTGCGCTCGTGTCCTGCTCCAAGCCCATCCCACCCCTC
GCATTACCCTCTTTGAGAAAAGCACCACCCACGGTCGTTGCGCCACACGA
GACGTCCCGGGCATTGGTTCCTTCGACCACGGCGCTCCTCATTTCTCTGC
GCTCTCTCCAGAATTCCAAGCGCAAGTCCAGCAATGGCAGGAGGAGGGGT
TGGTTATGCCTGCATCGTCTTCGTCGTCGTCACCGTCGTTGTGGCCTGGT
CACTATGTGGTCCATCCAAGCATGCGTTCTCTTCCCACGCATCTCGCCCA
AGGGTTGTCCATTCAACGGCCTTTTCTCATCACCAAACTGGAGATGAAAG
AGACAAAAAACCAGCAGCAAGAGCAAGACAGGTGCGCAGCCACCACCACC
ACCACCACCACCACCACCACCAGCGACAGCACCACCACCTACAACAGCAA
CAACAATGACAACAACAAAAGAGGGCAATGGATCCTCCACCACGATGACG
GCAAAATCACGCAAAAATTTGACGCTGTGGTCGTTGCCGTTCCAGCCGAG
CAAAGCATCCCCTTGCTTGAACCGGTATCTCCTGCACTGGCAGCACCTTT
GATTGATGTCAAGAGTGCGTCCTGTCTGAGCGTGATGGCTGCATGGGATC
AACCTGTCGGTGCTCCTTTTACCGAGTGGAAGAAAGCAAAGGCGGAGGAG
AAGGGAGAGGACGAAGGTATCCTCTACAGCGCCCGCCGGGACGATCTGAA
AACCCCAGGCCGCCCTGGGGGGGAGGGGGGAAAGGAGGGAGGGGGGGAGC
GGTGGGTGATGCACGCGACTCCAGCGTTCTCTGCTAGTCATATCCAGACG
GAGCCTTTCCCGAAAGAGAAAGTCATATTGAATGTGTTGGATGCGTTTTT
CAAAGAGGTGGAGAGAGGGAAGGAGGGAGAGAGAGAGGGAGGGAAGAAAG
ACATGGGGGAGGAAAGGGCGCCCAGGCCTGTTTATTTGTCAGTACAACGG
TGGCTCTACGCACAGACGTTTAATCCCTCCGAGGAACCGTTTGGATGGGA
GGAGAGAGAGAAGGTGGGGGCTTGTGGGGATGGTTGGCAAGGAAGGAGGG
AGGGAGGGGAGGAGGAGGAGGGGAAAGGGGGAATCGAGAGGGCATGGCTG
AGTGGGAGGAGGTTAGGAGAAGCGATGCTGGTGTCGTTGGGTCTAAGGAA
GGAGGAAAAGTGA
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Synonyms
Publications