NO21G01570.1, NO21G01570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01570.1
Unique NameNO21G01570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2701
Alignment locationchr21:464145..466845 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:464145..466845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01570.1 vs.
Match: EWM22642.1 (metal ion transporter family [Nannochloropsis gaditana])

HSP 1 Score: 343.6 bits (880), Expect = 1.600e-90
Identity = 202/312 (64.74%), Postives = 234/312 (75.00%), Query Frame = 0 
Query:  447 DMGEGGEEEEEFEFLALEAVLMTINNHFRNRLKDIRPHIIKNSKALLGNGTLNTQLQDTLRQLKSQVANHQAKVRSLHKAIFALLDDEEHLQMLHLTRIITNNQNHQQQQQQHFF-------LQNGGLESVNTDAGMALGASEGKAGGGSRMGGRNSSVACGGDSGNGESNSNYEQQQLISTWLPLEAEDNDEAEILLESFLGDFNELIIKWELVKEDMQNTENYVTVKLDMARNKLLTIGTLFALVNLCFAFGALVSGIFGMNLYNGVSEGSGSEDSFPFFVGTISFIVFMMTVITGSVLAYMYMSRIIVT 752
            D+   G EEEEFEFLALEAVLMTIN+HF+++LKD+RPHIIKN KALLGN TLN++ QDTLRQLKS+V   QAKVRSLHK +  LLDDEEHLQMLHLTR  +  Q  QQQQQQH         L +      +         +   A  GS  GGR     C   S  GE++     QQL    +  +AED+DEAEILLESFLGDFNE+I+KWEL+KEDMQNTENYV VKLDMARNKLLTIGTLFALVN+CFAFGAL+SGIFGMNL+NGVS GSGS +SFPFFVG +SFIV +MTV+ GS+LAYMY+SRI+VT
Sbjct:    2 DIDLNGVEEEEFEFLALEAVLMTINDHFKSKLKDLRPHIIKNGKALLGNATLNSEHQDTLRQLKSKVTTCQAKVRSLHKTVVDLLDDEEHLQMLHLTRTQSQQQQQQQQQQQHQKQEDQKPNLASAQKNEYHQQQEWRFRDTHETAMLGSFEGGRTRGRGC---SIGGETD-----QQLAGVLM--DAEDSDEAEILLESFLGDFNEMIMKWELIKEDMQNTENYVQVKLDMARNKLLTIGTLFALVNVCFAFGALISGIFGMNLFNGVSVGSGSPNSFPFFVGIVSFIVILMTVVGGSILAYMYVSRIMVT 303
The following BLAST results are available for this feature:
BLAST of NO21G01570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22642.11.600e-9064.74metal ion transporter family [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01570NO21G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01570.1NO21G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01570.1.cds1NO21G01570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01570.1 ID=NO21G01570.1|Name=NO21G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2701bp
AACAGGCACCTGCTGCCGCAATCAACCACACCGCCGCTGCCGCTTCGAAC
CCTGGCTGCCGTTACACCATGGCCCACCAACATCAGGTCAATGCCTCTGG
CGATGACGTCATTGGCTTGCCCATTACCATTGAAGCCGGCGCTGACTCGC
CCCCAAGCGACGTGGGTGCCTGTTCTGACGAGAACATAGGAGGAGGACGC
AAAGAGGGTACTGCATCTTTGTGGCGGCCACTACGCAAGGCCTTGGGGGT
TACATCCCAAGCGCGGCGCCACCGCAGCCGAGACGACAAATATGGTCGTA
ATATGGCCATTCCTGAGCTCGACGATGACGAGGGAGAGGACGAGGAGGGC
CTGGAGGAGAAGAATAATGGTGGGGATCTCTCCTCATCCATGGTGCTGGA
TATTGACGGGAATGGGGACGGGACAAGCGCAGGAGGTAAAAAGAGTCCTT
TTCGGCTACCTGACTATGTCCAGGCACGTAGCGTCCATAATTTGATCCCC
GCTTTGATCAGCGATGAAGAGGAAGAAGGGTTGGAGCTGCTAGCACATGC
CGTGGCTGCAGACAATCGTGCAGCCGAGGTCGAAGCGGCTGAGGCGTACG
CTGCCGCTGAGGGCGATGGACGAAATGCGGGCACCCGGCAGCCGTTGCTG
ATGGGATCCTTGAGTGAGACGCAGCGGGTTTCGAGCGGGGTGAAGGAGGA
GGGGCAGCATTCGACCTCGTCGACGACGACATTAACACAAGAGAACGGGA
ACACGACTCTCTCCCGTAGTAAAGCTTTACCTACTTGTCCTAAGGCGGGC
CGTAAGGTATTGACAGCCAAACAGCAGCATGTCCGTACTTTGACGCTGCC
GAAGCAAGGGCAGACGATGGAAATGGAATTGGCCTTAAAGGATTTACTCC
GTTACATCCAGAACGCCGTCCGTGCAGTGCATGTAAGCCAGCAACAACAA
TTTTCGATAAATCTAAGCCAAAACGCGTATGTACCTCCTTTTTCCACCGG
TGGTCAGTGCAAGGAGGATAGCGTGAGTAATGCCGCCAATTCTTTCAATC
GAAAGGGGATGCTTCATTCTAGGACAATGAGCACCGGTAATAATGAGAGT
ATCATGATGGGAGGAGGAGGGCCAGTAACCCGCATGCCATTGCAGGCACC
ACCCGCTCTGGTGGGTGGTTTGTTGAATGCCCGAGATGTGAGGCGGTTGG
TAAGTGGGTTGGACACGGAGAGTGTGAAGAGTAAAGAGATGAGTATTGCC
GTGCGTAGGCATACGATCGTGCTAAGTTTAGATATCATACGTTGTCTCAT
TTTGTGGGATCGGATCATTGTCGTCGTGCCGGACGGCGCTGAATCGAATT
GCTTCGGAGAGCTGGAAAGAAATTTGCGTTGGTTGAGAGTGCAGCAGCGG
GCGTTCGACATGGGTGAGGGAGGGGAGGAGGAGGAGGAGTTTGAATTCTT
GGCGTTGGAAGCAGTATTGATGACGATTAATAACCATTTTAGGAATCGCT
TGAAGGATATACGGCCGCACATTATCAAGAATAGCAAGGCATTGTTAGGA
AACGGAACGCTAAACACCCAGCTTCAAGATACTCTCCGGCAGCTAAAGAG
TCAAGTCGCCAATCACCAAGCTAAAGTCCGCTCTCTCCACAAGGCTATTT
TTGCTCTTCTCGACGACGAGGAACACCTCCAAATGCTGCACCTCACCCGT
ATTATCACCAATAATCAGAACCACCAGCAACAGCAGCAACAGCACTTTTT
CCTGCAGAATGGGGGACTGGAAAGTGTTAACACTGATGCTGGCATGGCGC
TAGGTGCCAGTGAAGGGAAAGCAGGAGGTGGGAGCAGGATGGGAGGCAGA
AACAGCAGTGTTGCTTGTGGTGGTGATAGTGGAAACGGGGAGAGCAATAG
CAACTACGAACAGCAGCAGCTCATCTCAACATGGCTGCCTTTGGAAGCGG
AGGACAACGACGAAGCTGAGATTTTGTTGGAAAGCTTTTTGGGGGACTTT
AATGAGTTGATAATAAAGTGGGAGTTGGTGAAGGAGGATATGCAGAATAC
TGAGAACTATGTGACAGTAAAGTTGGACATGGCCCGCAACAAGCTTTTGA
CGATCGGAACGTTGTTCGCGTTGGTTAACCTGTGTTTTGCATTTGGTGCG
CTTGTATCGGGAATTTTCGGGATGAATCTTTATAATGGGGTGAGTGAGGG
GAGTGGGAGTGAAGATAGCTTTCCTTTTTTCGTGGGAACGATTTCGTTTA
TTGTTTTCATGATGACGGTGATCACTGGGAGTGTATTGGCTTACATGTAC
ATGTCACGGATAATTGTCACTTGAAGAGAATTAGAAAAGTGCTGCTGTCG
GTTGGATCGAAGGGAAAGGCTACCTTCACGAGGGGGGGGCTGCTGTTGGA
AGACAGTGAAGTGACAAGATATGGAGTCGGGAAACTGGAGACGTGATTGA
AATACGTGTGTAAGGTTGCACGATGTCGAACAAATATTAGAAGCTGAAGC
CTGATTGACTCTGTGTGGTAGGGTGAGGGAGGATGTGGTAGGTTGGTTGA
AGTGCAGTGACCTTGCCTCGGTACGTCAGGAGGAAATGCATCGATCGTAG
AGCGGAAGCCTGTGCCTAATCTATGTTTGTGCGTCTTTCCACCCAGAGAT
TCAAAAATTGGGGAGTTTATTGAAGCGCCCAAAAAAAGATGCAGACACCC
G
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protein sequence of NO21G01570.1

>NO21G01570.1-protein ID=NO21G01570.1-protein|Name=NO21G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=752bp
MAHQHQVNASGDDVIGLPITIEAGADSPPSDVGACSDENIGGGRKEGTAS
LWRPLRKALGVTSQARRHRSRDDKYGRNMAIPELDDDEGEDEEGLEEKNN
GGDLSSSMVLDIDGNGDGTSAGGKKSPFRLPDYVQARSVHNLIPALISDE
EEEGLELLAHAVAADNRAAEVEAAEAYAAAEGDGRNAGTRQPLLMGSLSE
TQRVSSGVKEEGQHSTSSTTTLTQENGNTTLSRSKALPTCPKAGRKVLTA
KQQHVRTLTLPKQGQTMEMELALKDLLRYIQNAVRAVHVSQQQQFSINLS
QNAYVPPFSTGGQCKEDSVSNAANSFNRKGMLHSRTMSTGNNESIMMGGG
GPVTRMPLQAPPALVGGLLNARDVRRLVSGLDTESVKSKEMSIAVRRHTI
VLSLDIIRCLILWDRIIVVVPDGAESNCFGELERNLRWLRVQQRAFDMGE
GGEEEEEFEFLALEAVLMTINNHFRNRLKDIRPHIIKNSKALLGNGTLNT
QLQDTLRQLKSQVANHQAKVRSLHKAIFALLDDEEHLQMLHLTRIITNNQ
NHQQQQQQHFFLQNGGLESVNTDAGMALGASEGKAGGGSRMGGRNSSVAC
GGDSGNGESNSNYEQQQLISTWLPLEAEDNDEAEILLESFLGDFNELIIK
WELVKEDMQNTENYVTVKLDMARNKLLTIGTLFALVNLCFAFGALVSGIF
GMNLYNGVSEGSGSEDSFPFFVGTISFIVFMMTVITGSVLAYMYMSRIIV
T*
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mRNA from alignment at chr21:464145..466845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01570.1 ID=NO21G01570.1|Name=NO21G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2701bp|location=Sequence derived from alignment at chr21:464145..466845+ (Nannochloropsis oceanica)
AACAGGCACCTGCTGCCGCAATCAACCACACCGCCGCTGCCGCTTCGAAC
CCTGGCTGCCGTTACACCATGGCCCACCAACATCAGGTCAATGCCTCTGG
CGATGACGTCATTGGCTTGCCCATTACCATTGAAGCCGGCGCTGACTCGC
CCCCAAGCGACGTGGGTGCCTGTTCTGACGAGAACATAGGAGGAGGACGC
AAAGAGGGTACTGCATCTTTGTGGCGGCCACTACGCAAGGCCTTGGGGGT
TACATCCCAAGCGCGGCGCCACCGCAGCCGAGACGACAAATATGGTCGTA
ATATGGCCATTCCTGAGCTCGACGATGACGAGGGAGAGGACGAGGAGGGC
CTGGAGGAGAAGAATAATGGTGGGGATCTCTCCTCATCCATGGTGCTGGA
TATTGACGGGAATGGGGACGGGACAAGCGCAGGAGGTAAAAAGAGTCCTT
TTCGGCTACCTGACTATGTCCAGGCACGTAGCGTCCATAATTTGATCCCC
GCTTTGATCAGCGATGAAGAGGAAGAAGGGTTGGAGCTGCTAGCACATGC
CGTGGCTGCAGACAATCGTGCAGCCGAGGTCGAAGCGGCTGAGGCGTACG
CTGCCGCTGAGGGCGATGGACGAAATGCGGGCACCCGGCAGCCGTTGCTG
ATGGGATCCTTGAGTGAGACGCAGCGGGTTTCGAGCGGGGTGAAGGAGGA
GGGGCAGCATTCGACCTCGTCGACGACGACATTAACACAAGAGAACGGGA
ACACGACTCTCTCCCGTAGTAAAGCTTTACCTACTTGTCCTAAGGCGGGC
CGTAAGGTATTGACAGCCAAACAGCAGCATGTCCGTACTTTGACGCTGCC
GAAGCAAGGGCAGACGATGGAAATGGAATTGGCCTTAAAGGATTTACTCC
GTTACATCCAGAACGCCGTCCGTGCAGTGCATGTAAGCCAGCAACAACAA
TTTTCGATAAATCTAAGCCAAAACGCGTATGTACCTCCTTTTTCCACCGG
TGGTCAGTGCAAGGAGGATAGCGTGAGTAATGCCGCCAATTCTTTCAATC
GAAAGGGGATGCTTCATTCTAGGACAATGAGCACCGGTAATAATGAGAGT
ATCATGATGGGAGGAGGAGGGCCAGTAACCCGCATGCCATTGCAGGCACC
ACCCGCTCTGGTGGGTGGTTTGTTGAATGCCCGAGATGTGAGGCGGTTGG
TAAGTGGGTTGGACACGGAGAGTGTGAAGAGTAAAGAGATGAGTATTGCC
GTGCGTAGGCATACGATCGTGCTAAGTTTAGATATCATACGTTGTCTCAT
TTTGTGGGATCGGATCATTGTCGTCGTGCCGGACGGCGCTGAATCGAATT
GCTTCGGAGAGCTGGAAAGAAATTTGCGTTGGTTGAGAGTGCAGCAGCGG
GCGTTCGACATGGGTGAGGGAGGGGAGGAGGAGGAGGAGTTTGAATTCTT
GGCGTTGGAAGCAGTATTGATGACGATTAATAACCATTTTAGGAATCGCT
TGAAGGATATACGGCCGCACATTATCAAGAATAGCAAGGCATTGTTAGGA
AACGGAACGCTAAACACCCAGCTTCAAGATACTCTCCGGCAGCTAAAGAG
TCAAGTCGCCAATCACCAAGCTAAAGTCCGCTCTCTCCACAAGGCTATTT
TTGCTCTTCTCGACGACGAGGAACACCTCCAAATGCTGCACCTCACCCGT
ATTATCACCAATAATCAGAACCACCAGCAACAGCAGCAACAGCACTTTTT
CCTGCAGAATGGGGGACTGGAAAGTGTTAACACTGATGCTGGCATGGCGC
TAGGTGCCAGTGAAGGGAAAGCAGGAGGTGGGAGCAGGATGGGAGGCAGA
AACAGCAGTGTTGCTTGTGGTGGTGATAGTGGAAACGGGGAGAGCAATAG
CAACTACGAACAGCAGCAGCTCATCTCAACATGGCTGCCTTTGGAAGCGG
AGGACAACGACGAAGCTGAGATTTTGTTGGAAAGCTTTTTGGGGGACTTT
AATGAGTTGATAATAAAGTGGGAGTTGGTGAAGGAGGATATGCAGAATAC
TGAGAACTATGTGACAGTAAAGTTGGACATGGCCCGCAACAAGCTTTTGA
CGATCGGAACGTTGTTCGCGTTGGTTAACCTGTGTTTTGCATTTGGTGCG
CTTGTATCGGGAATTTTCGGGATGAATCTTTATAATGGGGTGAGTGAGGG
GAGTGGGAGTGAAGATAGCTTTCCTTTTTTCGTGGGAACGATTTCGTTTA
TTGTTTTCATGATGACGGTGATCACTGGGAGTGTATTGGCTTACATGTAC
ATGTCACGGATAATTGTCACTTGAAGAGAATTAGAAAAGTGCTGCTGTCG
GTTGGATCGAAGGGAAAGGCTACCTTCACGAGGGGGGGGCTGCTGTTGGA
AGACAGTGAAGTGACAAGATATGGAGTCGGGAAACTGGAGACGTGATTGA
AATACGTGTGTAAGGTTGCACGATGTCGAACAAATATTAGAAGCTGAAGC
CTGATTGACTCTGTGTGGTAGGGTGAGGGAGGATGTGGTAGGTTGGTTGA
AGTGCAGTGACCTTGCCTCGGTACGTCAGGAGGAAATGCATCGATCGTAG
AGCGGAAGCCTGTGCCTAATCTATGTTTGTGCGTCTTTCCACCCAGAGAT
TCAAAAATTGGGGAGTTTATTGAAGCGCCCAAAAAAAGATGCAGACACCC
G
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Coding sequence (CDS) from alignment at chr21:464145..466845+

>NO21G01570.1 ID=NO21G01570.1|Name=NO21G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=2256bp|location=Sequence derived from alignment at chr21:464145..466845+ (Nannochloropsis oceanica)
ATGGCCCACCAACATCAGGTCAATGCCTCTGGCGATGACGTCATTGGCTT
GCCCATTACCATTGAAGCCGGCGCTGACTCGCCCCCAAGCGACGTGGGTG
CCTGTTCTGACGAGAACATAGGAGGAGGACGCAAAGAGGGTACTGCATCT
TTGTGGCGGCCACTACGCAAGGCCTTGGGGGTTACATCCCAAGCGCGGCG
CCACCGCAGCCGAGACGACAAATATGGTCGTAATATGGCCATTCCTGAGC
TCGACGATGACGAGGGAGAGGACGAGGAGGGCCTGGAGGAGAAGAATAAT
GGTGGGGATCTCTCCTCATCCATGGTGCTGGATATTGACGGGAATGGGGA
CGGGACAAGCGCAGGAGGTAAAAAGAGTCCTTTTCGGCTACCTGACTATG
TCCAGGCACGTAGCGTCCATAATTTGATCCCCGCTTTGATCAGCGATGAA
GAGGAAGAAGGGTTGGAGCTGCTAGCACATGCCGTGGCTGCAGACAATCG
TGCAGCCGAGGTCGAAGCGGCTGAGGCGTACGCTGCCGCTGAGGGCGATG
GACGAAATGCGGGCACCCGGCAGCCGTTGCTGATGGGATCCTTGAGTGAG
ACGCAGCGGGTTTCGAGCGGGGTGAAGGAGGAGGGGCAGCATTCGACCTC
GTCGACGACGACATTAACACAAGAGAACGGGAACACGACTCTCTCCCGTA
GTAAAGCTTTACCTACTTGTCCTAAGGCGGGCCGTAAGGTATTGACAGCC
AAACAGCAGCATGTCCGTACTTTGACGCTGCCGAAGCAAGGGCAGACGAT
GGAAATGGAATTGGCCTTAAAGGATTTACTCCGTTACATCCAGAACGCCG
TCCGTGCAGTGCATGTAAGCCAGCAACAACAATTTTCGATAAATCTAAGC
CAAAACGCGTATGTACCTCCTTTTTCCACCGGTGGTCAGTGCAAGGAGGA
TAGCGTGAGTAATGCCGCCAATTCTTTCAATCGAAAGGGGATGCTTCATT
CTAGGACAATGAGCACCGGTAATAATGAGAGTATCATGATGGGAGGAGGA
GGGCCAGTAACCCGCATGCCATTGCAGGCACCACCCGCTCTGGTGGGTGG
TTTGTTGAATGCCCGAGATGTGAGGCGGTTGGTAAGTGGGTTGGACACGG
AGAGTGTGAAGAGTAAAGAGATGAGTATTGCCGTGCGTAGGCATACGATC
GTGCTAAGTTTAGATATCATACGTTGTCTCATTTTGTGGGATCGGATCAT
TGTCGTCGTGCCGGACGGCGCTGAATCGAATTGCTTCGGAGAGCTGGAAA
GAAATTTGCGTTGGTTGAGAGTGCAGCAGCGGGCGTTCGACATGGGTGAG
GGAGGGGAGGAGGAGGAGGAGTTTGAATTCTTGGCGTTGGAAGCAGTATT
GATGACGATTAATAACCATTTTAGGAATCGCTTGAAGGATATACGGCCGC
ACATTATCAAGAATAGCAAGGCATTGTTAGGAAACGGAACGCTAAACACC
CAGCTTCAAGATACTCTCCGGCAGCTAAAGAGTCAAGTCGCCAATCACCA
AGCTAAAGTCCGCTCTCTCCACAAGGCTATTTTTGCTCTTCTCGACGACG
AGGAACACCTCCAAATGCTGCACCTCACCCGTATTATCACCAATAATCAG
AACCACCAGCAACAGCAGCAACAGCACTTTTTCCTGCAGAATGGGGGACT
GGAAAGTGTTAACACTGATGCTGGCATGGCGCTAGGTGCCAGTGAAGGGA
AAGCAGGAGGTGGGAGCAGGATGGGAGGCAGAAACAGCAGTGTTGCTTGT
GGTGGTGATAGTGGAAACGGGGAGAGCAATAGCAACTACGAACAGCAGCA
GCTCATCTCAACATGGCTGCCTTTGGAAGCGGAGGACAACGACGAAGCTG
AGATTTTGTTGGAAAGCTTTTTGGGGGACTTTAATGAGTTGATAATAAAG
TGGGAGTTGGTGAAGGAGGATATGCAGAATACTGAGAACTATGTGACAGT
AAAGTTGGACATGGCCCGCAACAAGCTTTTGACGATCGGAACGTTGTTCG
CGTTGGTTAACCTGTGTTTTGCATTTGGTGCGCTTGTATCGGGAATTTTC
GGGATGAATCTTTATAATGGGGTGAGTGAGGGGAGTGGGAGTGAAGATAG
CTTTCCTTTTTTCGTGGGAACGATTTCGTTTATTGTTTTCATGATGACGG
TGATCACTGGGAGTGTATTGGCTTACATGTACATGTCACGGATAATTGTC
ACTTGA
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Synonyms
Publications