NO21G01450.1, NO21G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01450.1
Unique NameNO21G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1338
Alignment locationchr21:437910..439744 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:437910..439744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01450.1 vs.
Match: EWM22626.1 (7-dehydrocholesterol reductase [Nannochloropsis gaditana])

HSP 1 Score: 856.7 bits (2212), Expect = 3.300e-245
Identity = 392/445 (88.09%), Postives = 422/445 (94.83%), Query Frame = 0 
Query:    1 MWLNNNGKSSGLLPGRESVGPLALMCITPVFIFILWYTMQHLGGDFGKLIDNFHTNGWGYLKVIVPTPFDPTAWKVILSYMAVELAFMRLLPGKTFKATVTPAGNVPVYKANGMQAFFASLFLFFLLQQYGPAYGLHVSWVYHHMGELLSAMNVFSLAFCFFLLVKGLTFPSSSDSGSSGNWIIDFYWGTELYPRVLGFDMKMFTNCRFGMMFWALGILCYAQAQVEADGFLSNAMLVSVTLQLVYITKFFHWETGYLCSMDIQHDRAGYYICWGCLVWVPSVYTSPSYFLVNHAAQDISSLTAVLLLLAGAICVAINYWADRQRQVFRATDGKCTIWGKPPVFITASYTTEAGQKRSSLLLASGWWGVARHFHYVPEILGAFLWSCPAGFHGFRYFLAYFYVIFLTPLLFDRAFRDDARCRDKYGKHWEKYCALVPYKIIPGVL 446
            MW N NGKSSGLLPGRES+GPL LM  TP+FIFI W+TMQHL GDFG+LI++F  +GWGYLK+IVP+PFDPTAWKVILSYMAVELAFMRLLPGKTFKATVTPAGNVPVY+ANGMQA+ ASL LFFLLQ+YGPA+GLHVSWVYHHMGELLSAMNVFSLAFC FLLVKGLTFPSSSDSGSSGNW+IDFYWGTELYPRVLGFD+KMFTNCRFGMMFWALGILCYAQAQ E DGFLSNAMLVSV LQL+YITKFF+WETGYLCSMDIQHDRAGYYICWGCLVWVP+VYTSPSYFLVNH  +DI SLTA+LLL AGA CV INYWADRQRQVFRA+DGKC+IWGKPPVFITASYTTE G+KRSS+LLASGWWGVARHFHYVPEI+GAFLWSCPAGF+G R+FLAYFYVIFLTPLLFDRAFRDDARCRDKYGKHW+KYCALVPYK+IPG+L
Sbjct:    1 MWQNKNGKSSGLLPGRESLGPLFLMGTTPIFIFITWFTMQHLDGDFGRLIESFRAHGWGYLKIIVPSPFDPTAWKVILSYMAVELAFMRLLPGKTFKATVTPAGNVPVYRANGMQAYAASLLLFFLLQRYGPAHGLHVSWVYHHMGELLSAMNVFSLAFCLFLLVKGLTFPSSSDSGSSGNWVIDFYWGTELYPRVLGFDLKMFTNCRFGMMFWALGILCYAQAQAEKDGFLSNAMLVSVLLQLIYITKFFYWETGYLCSMDIQHDRAGYYICWGCLVWVPAVYTSPSYFLVNHGGRDIGSLTALLLLSAGAACVGINYWADRQRQVFRASDGKCSIWGKPPVFITASYTTEKGEKRSSILLASGWWGVARHFHYVPEIMGAFLWSCPAGFYGLRFFLAYFYVIFLTPLLFDRAFRDDARCRDKYGKHWDKYCALVPYKMIPGIL 445
The following BLAST results are available for this feature:
BLAST of NO21G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22626.13.300e-24588.097-dehydrocholesterol reductase [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01450NO21G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01450.1NO21G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01450.1.cds1NO21G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01450.1.cds2NO21G01450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01450.1.cds3NO21G01450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01450.1.cds4NO21G01450.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01450.1 ID=NO21G01450.1|Name=NO21G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp
ATGTGGCTCAACAATAATGGCAAGTCCTCGGGCCTTTTGCCCGGCCGCGA
GAGTGTGGGGCCCCTTGCGCTCATGTGCATCACGCCCGTCTTCATCTTCA
TTCTTTGGTACACCATGCAGCACTTGGGGGGCGACTTCGGCAAACTCATC
GATAACTTCCATACGAATGGATGGGGTTACCTCAAGGTGATCGTTCCGAC
GCCCTTTGACCCCACCGCTTGGAAGGTGATTCTCTCCTACATGGCTGTGG
AGCTGGCCTTCATGAGGCTCCTCCCAGGCAAGACCTTCAAGGCGACCGTG
ACACCGGCAGGAAACGTACCCGTGTATAAGGCTAACGGTATGCAAGCCTT
CTTTGCCTCCCTCTTCCTCTTCTTCCTCCTGCAGCAATACGGCCCTGCGT
ACGGCCTGCACGTCTCCTGGGTCTACCACCACATGGGCGAGCTTCTTTCG
GCCATGAACGTCTTTTCTCTTGCCTTCTGCTTTTTCCTCCTGGTCAAGGG
CCTCACCTTTCCAAGTTCCTCTGATTCAGGCTCCTCGGGCAACTGGATCA
TTGACTTCTACTGGGGCACGGAGCTGTACCCGCGCGTACTTGGCTTCGAC
ATGAAGATGTTCACCAACTGCCGGTTTGGGATGATGTTCTGGGCGTTGGG
CATTCTCTGCTACGCGCAGGCCCAGGTCGAGGCAGACGGGTTCCTCTCCA
ACGCCATGCTGGTGAGCGTGACCCTGCAACTCGTGTACATCACCAAGTTC
TTTCACTGGGAGACGGGCTACCTCTGCTCCATGGACATCCAGCACGACCG
GGCCGGCTACTACATTTGTTGGGGCTGCCTGGTCTGGGTCCCCTCCGTCT
ATACCTCTCCGTCCTACTTTCTGGTCAACCACGCCGCCCAGGATATCTCC
AGCCTCACGGCCGTCCTCCTCCTCCTGGCCGGTGCTATCTGTGTCGCCAT
CAACTACTGGGCCGACCGCCAGCGCCAGGTCTTCCGCGCCACTGACGGCA
AGTGTACCATCTGGGGAAAGCCGCCTGTATTCATCACGGCCTCCTACACC
ACCGAAGCGGGCCAGAAGCGCTCCTCCCTTCTGCTGGCCTCGGGCTGGTG
GGGCGTGGCGCGGCACTTTCATTATGTGCCCGAGATCTTGGGCGCGTTCC
TCTGGAGCTGCCCGGCGGGCTTTCATGGCTTTCGCTATTTCTTGGCTTAT
TTCTATGTTATTTTTCTGACCCCGTTACTCTTTGACCGCGCCTTCCGTGA
CGACGCGCGGTGCCGTGACAAATATGGGAAGCACTGGGAGAAGTATTGCG
CGCTCGTGCCCTACAAGATTATCCCCGGTGTCCTTTAA
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protein sequence of NO21G01450.1

>NO21G01450.1-protein ID=NO21G01450.1-protein|Name=NO21G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MWLNNNGKSSGLLPGRESVGPLALMCITPVFIFILWYTMQHLGGDFGKLI
DNFHTNGWGYLKVIVPTPFDPTAWKVILSYMAVELAFMRLLPGKTFKATV
TPAGNVPVYKANGMQAFFASLFLFFLLQQYGPAYGLHVSWVYHHMGELLS
AMNVFSLAFCFFLLVKGLTFPSSSDSGSSGNWIIDFYWGTELYPRVLGFD
MKMFTNCRFGMMFWALGILCYAQAQVEADGFLSNAMLVSVTLQLVYITKF
FHWETGYLCSMDIQHDRAGYYICWGCLVWVPSVYTSPSYFLVNHAAQDIS
SLTAVLLLLAGAICVAINYWADRQRQVFRATDGKCTIWGKPPVFITASYT
TEAGQKRSSLLLASGWWGVARHFHYVPEILGAFLWSCPAGFHGFRYFLAY
FYVIFLTPLLFDRAFRDDARCRDKYGKHWEKYCALVPYKIIPGVL*
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mRNA from alignment at chr21:437910..439744+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01450.1 ID=NO21G01450.1|Name=NO21G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp|location=Sequence derived from alignment at chr21:437910..439744+ (Nannochloropsis oceanica)
ATGTGGCTCAACAATAATGGCAAGTCCTCGGGCCTTTTGCCCGGCCGCGA
GAGTGTGGGGCCCCTTGCGCTCATGTGCATCACGCCCGTCTTCATCTTCA
TTCTTTGGTACACCATGCAGCACTTGGGGGGCGACTTCGGCAAACTCATC
GATAACTTCCATACGGTGAGTCAGATGGGAAGGGGACGAGGGAGAGGCGA
GGGGTAGCGAGGACTGCACCAGCTATGTGCCACCCGTCGCCTAACCAGGC
CCTCGAGCGCTTTCTCTGACACTCTTATAACTCGCAGAATGGATGGGGTT
ACCTCAAGGTGATCGTTCCGACGCCCTTTGACCCCACCGCTTGGAAGGTG
ATTCTCTCCTACATGGCTGTGGAGCTGGCCTTCATGAGGTAAGTATTTCG
GTGGCGCCTAATGAGCTCCTGCAGGCCCGGTAGAGTTCCCCCCAACACTG
GTGCTCTTATGTACGCTCATGAATTCCGCTAGAGTTTCAGTGAACGTCCC
TGCTCCCACGGCATATTTACCCTGCATCTAAATCTTATTCCTTTCCTTCT
CCATCTACCCTTCCAGGCTCCTCCCAGGCAAGACCTTCAAGGCGACCGTG
ACACCGGCAGGAAACGTACCCGTGTATAAGGCTAACGGTATGCAAGCCTT
CTTTGCCTCCCTCTTCCTCTTCTTCCTCCTGCAGCAATACGGCCCTGCGT
ACGGCCTGCACGTCTCCTGGGTCTACCACCACATGGGCGAGCTTCTTTCG
GCCATGAACGTCTTTTCTCTTGCCTTCTGCTTTTTCCTCCTGGTCAAGGG
CCTCACCTTTCCAAGTTCCTCTGATTCAGGCTCCTCGGGCAACTGGATCA
TTGACTTCTACTGGTACGTATTGACAGAAAGCGGGGGGGGGGACGTGTGG
AGTGGTGTAGTTGGGTTTTTGTCTATTGATTCTCGTAAAGCGTAATTAAC
GATCGTGTCTTTTCTCGTTCTCTCCCCGCGGCTGGTTGCATTGACTACCC
TTACTTACCACCTCCCTCCTCCTTCCCCCTTCCTCTTTCTCCTCTTCGCC
CTGAACGCAGGGGCACGGAGCTGTACCCGCGCGTACTTGGCTTCGACATG
AAGATGTTCACCAACTGCCGGTTTGGGATGATGTTCTGGGCGTTGGGCAT
TCTCTGCTACGCGCAGGCCCAGGTCGAGGCAGACGGGTTCCTCTCCAACG
CCATGCTGGTGAGCGTGACCCTGCAACTCGTGTACATCACCAAGTTCTTT
CACTGGGAGACGGGCTACCTCTGCTCCATGGACATCCAGCACGACCGGGC
CGGCTACTACATTTGTTGGGGCTGCCTGGTCTGGGTCCCCTCCGTCTATA
CCTCTCCGTCCTACTTTCTGGTCAACCACGCCGCCCAGGATATCTCCAGC
CTCACGGCCGTCCTCCTCCTCCTGGCCGGTGCTATCTGTGTCGCCATCAA
CTACTGGGCCGACCGCCAGCGCCAGGTCTTCCGCGCCACTGACGGCAAGT
GTACCATCTGGGGAAAGCCGCCTGTATTCATCACGGCCTCCTACACCACC
GAAGCGGGCCAGAAGCGCTCCTCCCTTCTGCTGGCCTCGGGCTGGTGGGG
CGTGGCGCGGCACTTTCATTATGTGCCCGAGATCTTGGGCGCGTTCCTCT
GGAGCTGCCCGGCGGGCTTTCATGGCTTTCGCTATTTCTTGGCTTATTTC
TATGTTATTTTTCTGACCCCGTTACTCTTTGACCGCGCCTTCCGTGACGA
CGCGCGGTGCCGTGACAAATATGGGAAGCACTGGGAGAAGTATTGCGCGC
TCGTGCCCTACAAGATTATCCCCGGTGTCCTTTAA
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Coding sequence (CDS) from alignment at chr21:437910..439744+

>NO21G01450.1 ID=NO21G01450.1|Name=NO21G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at chr21:437910..439744+ (Nannochloropsis oceanica)
ATGTGGCTCAACAATAATGGCAAGTCCTCGGGCCTTTTGCCCGGCCGCGA
GAGTGTGGGGCCCCTTGCGCTCATGTGCATCACGCCCGTCTTCATCTTCA
TTCTTTGGTACACCATGCAGCACTTGGGGGGCGACTTCGGCAAACTCATC
GATAACTTCCATACGAATGGATGGGGTTACCTCAAGGTGATCGTTCCGAC
GCCCTTTGACCCCACCGCTTGGAAGGTGATTCTCTCCTACATGGCTGTGG
AGCTGGCCTTCATGAGGCTCCTCCCAGGCAAGACCTTCAAGGCGACCGTG
ACACCGGCAGGAAACGTACCCGTGTATAAGGCTAACGGTATGCAAGCCTT
CTTTGCCTCCCTCTTCCTCTTCTTCCTCCTGCAGCAATACGGCCCTGCGT
ACGGCCTGCACGTCTCCTGGGTCTACCACCACATGGGCGAGCTTCTTTCG
GCCATGAACGTCTTTTCTCTTGCCTTCTGCTTTTTCCTCCTGGTCAAGGG
CCTCACCTTTCCAAGTTCCTCTGATTCAGGCTCCTCGGGCAACTGGATCA
TTGACTTCTACTGGGGCACGGAGCTGTACCCGCGCGTACTTGGCTTCGAC
ATGAAGATGTTCACCAACTGCCGGTTTGGGATGATGTTCTGGGCGTTGGG
CATTCTCTGCTACGCGCAGGCCCAGGTCGAGGCAGACGGGTTCCTCTCCA
ACGCCATGCTGGTGAGCGTGACCCTGCAACTCGTGTACATCACCAAGTTC
TTTCACTGGGAGACGGGCTACCTCTGCTCCATGGACATCCAGCACGACCG
GGCCGGCTACTACATTTGTTGGGGCTGCCTGGTCTGGGTCCCCTCCGTCT
ATACCTCTCCGTCCTACTTTCTGGTCAACCACGCCGCCCAGGATATCTCC
AGCCTCACGGCCGTCCTCCTCCTCCTGGCCGGTGCTATCTGTGTCGCCAT
CAACTACTGGGCCGACCGCCAGCGCCAGGTCTTCCGCGCCACTGACGGCA
AGTGTACCATCTGGGGAAAGCCGCCTGTATTCATCACGGCCTCCTACACC
ACCGAAGCGGGCCAGAAGCGCTCCTCCCTTCTGCTGGCCTCGGGCTGGTG
GGGCGTGGCGCGGCACTTTCATTATGTGCCCGAGATCTTGGGCGCGTTCC
TCTGGAGCTGCCCGGCGGGCTTTCATGGCTTTCGCTATTTCTTGGCTTAT
TTCTATGTTATTTTTCTGACCCCGTTACTCTTTGACCGCGCCTTCCGTGA
CGACGCGCGGTGCCGTGACAAATATGGGAAGCACTGGGAGAAGTATTGCG
CGCTCGTGCCCTACAAGATTATCCCCGGTGTCCTTTAA
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Synonyms
Publications