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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr21 | genome | chr21:414373..416886 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01380.1 vs.
Match: EWM22676.1 (chaperonin containing tcp1 theta subunit [Nannochloropsis gaditana]) HSP 1 Score: 923.7 bits (2386), Expect = 2.700e-265 Identity = 483/549 (87.98%), Postives = 507/549 (92.35%), Query Frame = 0
Query: 1 MSRGLNYNQAAGLQGMLKEGTKSMEGVDEAVIRNIEAAKQLARICSSSMGPNGLKKLVVNHLEKIIVTSDCATILKELEVQHPAAKMLVLAAMMQEKECGDATNLTVSFAGELLKKAEDLLHTGLHPSEIVAGYRTAFEKAMDILPTLTVHTVDDPRDALQVSHVLESVLGTKYFGFQATLAPYVTQACQAVMPSAPKKPSLNVDSVRVCKLQGGTIEDSLVMKGIVVSRSTEGTIKRALKAKVAVYGCGIEASSTETKGTVLIRNAEDLLNYNKGEEKLMEDIIKGIAESGIAVVVTGGSISEMALHFLERYKLMVVKIPSKWELRRLCGAVNATALVRLGPPTAEEAGFVDVVEVREVGGRKITVFEQNAEESRVASIILRASTHNVLEDLERAVDDGVNMVKVLCTDGRFLPGAGAVEIELARRIYKLADATTGLDQYAMRKFAEALEIVPRTLAESSGQDATDTVAALYAEHEKGNVTAGVDVEGTGVKVGAEGVQGVCDSLFVKDSALRLAVDAALTVLRVDQIIMSKPAGGPKPPAGGGGDKE 550
MSR LNYNQAAGLQGMLKEG+KS+EGVDEAVIRNIEAAKQLA ICSSSMGPNGLKKLVVNHLEKIIVTSDCATILKELEVQHPAAKMLV+AAMMQEKECGDATN TVSFAGELLKKAEDLLH GLH SEIVAGYR AF+KAM+ILPTLT HTV DPRDA QV VLESVLGTKYFG++ TLAPYV QACQAVMP AP+KPSLNVDSVRVCKL GGTI DSLVMKG+VVSR+TEGTIKRALKAKVAV+GCGIEASSTETKGTVLIRNAE+LLNYNKGEEKLMEDIIK IA+SG+ V+VTGGSISEMALHFLERYKLMVVKI SKWELRRLCGAVNATALVRLG PT EEAGFVD EVREVGGRK+TVFEQ AEESRVASIILRAST NVLEDLERAVDDGVN VKVLC DGRFLPGAGAVEIELARRI KLADA+TGLDQYAMRKFAEALE+VPRTLAESSGQ+ATDTV ALYAEHEKG + GVD EG GV G +GV DSL VKDSALRLAVDAALTVLRVDQIIMSKPAGGPKPP+GGGGD++
Sbjct: 1 MSRSLNYNQAAGLQGMLKEGSKSLEGVDEAVIRNIEAAKQLAGICSSSMGPNGLKKLVVNHLEKIIVTSDCATILKELEVQHPAAKMLVMAAMMQEKECGDATNFTVSFAGELLKKAEDLLHKGLHTSEIVAGYRVAFDKAMEILPTLTTHTVQDPRDAQQVIRVLESVLGTKYFGYEGTLAPYVAQACQAVMPPAPRKPSLNVDSVRVCKLMGGTIGDSLVMKGVVVSRNTEGTIKRALKAKVAVFGCGIEASSTETKGTVLIRNAEELLNYNKGEEKLMEDIIKSIADSGVQVLVTGGSISEMALHFLERYKLMVVKIQSKWELRRLCGAVNATALVRLGAPTPEEAGFVDRAEVREVGGRKVTVFEQEAEESRVASIILRASTQNVLEDLERAVDDGVNTVKVLCQDGRFLPGAGAVEIELARRIAKLADASTGLDQYAMRKFAEALEVVPRTLAESSGQEATDTVTALYAEHEKGKLGVGVDAEGAGV-----GDKGVLDSLAVKDSALRLAVDAALTVLRVDQIIMSKPAGGPKPPSGGGGDED 544
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01380.1 ID=NO21G01380.1|Name=NO21G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2514bp
CTCTACGAGATGAAAGAAGAGTTTTTGGGACGTCTTTGTGGTATTGGTCA
CTGTGACTGCTAGCTCCTCGTTCATAGCTACTCTCTATGAATGATGTGCC
TGGCATGTAGCGGCATCAGGTGCTGTCGGTTAATGCGGTCAAGGCTCATC
GCCAGAAGCGACTTTCGCACTCCACTCCACGCAGGAAGAAGCCGGGCGAA
GAACAAACTTTTGGATGCAGCACCAAACCCAAAACGTCAATACTCAAGCC
CGCTCATAGAGGTGCACCAGCGCCTCCTTCGTCCTTCATCACCGCGTCCT
AGTCGTGGTGGGATCGCCACTTTTCCCTTGCCTCTTTACCTCAGGTCTTG
CCGAGCCTCGCCTGCTCACGCCTCTCGCCTCACCCCCCACCATCCCATAT
TACAGAAAAAGAGGCGCCCCCAAAAACACAGCAATGTCACGCGGGCTGAA
TTATAACCAGGCCGCAGGCCTTCAAGGCATGCTCAAGGAAGGCACGAAAA
GCATGGAGGGGGTGGACGAGGCCGTCATCCGCAACATCGAAGCCGCTAAG
CAACTCGCCCGCATCTGCTCCTCCTCAATGGGACCGAATGGGCTCAAGAA
GCTCGTCGTGAACCACCTAGAGAAGATCATCGTCACCAGCGACTGTGCCA
CCATCCTGAAGGAATTGGAAGTGCAACATCCTGCTGCGAAAATGCTCGTG
TTGGCCGCCATGATGCAAGAAAAAGAATGCGGGGACGCGACCAACCTCAC
CGTGTCCTTCGCAGGAGAGCTCCTGAAAAAAGCTGAAGACCTTCTCCACA
CCGGTTTGCACCCAAGTGAAATCGTTGCCGGATACCGCACTGCTTTCGAA
AAGGCCATGGATATCCTCCCTACCCTCACGGTGCACACCGTGGACGACCC
CCGTGATGCTTTACAAGTCTCTCATGTCTTGGAGTCGGTTCTTGGGACGA
AATACTTTGGTTTCCAAGCTACTTTGGCCCCCTACGTCACACAGGCTTGC
CAAGCCGTCATGCCTTCGGCGCCGAAGAAACCGTCGTTGAATGTAGACTC
GGTCAGGGTATGCAAATTGCAAGGGGGGACGATAGAAGACAGTTTAGTGA
TGAAGGGCATTGTGGTGTCCAGGAGCACGGAGGGCACGATTAAAAGGGCC
CTCAAGGCGAAAGTGGCCGTGTATGGCTGTGGGATAGAGGCGTCTTCGAC
AGAAACGAAGGGAACAGTGCTGATTCGAAATGCGGAGGATTTGTTGAATT
ATAACAAGGGGGAGGAGAAGCTGATGGAGGACATCATTAAAGGGATTGCC
GAGAGCGGGATAGCAGTAGTGGTCACAGGCGGGTCGATCAGCGAAATGGC
TTTGCACTTCCTTGAGCGATACAAGTTGATGGTTGTCAAGATTCCATCCA
AGTGGGAGTTGAGGCGGTTGTGCGGTGCTGTGAATGCGACTGCGTTGGTG
AGGTTAGGCCCCCCCACGGCGGAGGAGGCGGGCTTTGTGGATGTGGTGGA
GGTGAGGGAGGTGGGGGGTAGGAAGATCACGGTGTTTGAGCAAAATGCGG
AGGAGAGTCGGGTGGCGAGTATCATCTTGAGGGCGAGCACGCATAACGTG
CTGGAGGACTTGGAGAGGGCGGTTGATGATGGGGTGAACATGGTGAAGGT
CTTGTGCACGGACGGTCGGTTCTTGCCGGGAGCGGGCGCCGTGGAGATCG
AGCTGGCGAGACGGATCTATAAGCTGGCGGATGCTACAACGGGGCTTGAT
CAGTACGCGATGAGGAAGTTCGCGGAGGCCTTGGAAATAGTGCCAAGGAC
CCTGGCAGAGAGCTCGGGGCAGGACGCGACTGATACGGTGGCGGCCCTGT
ACGCCGAGCACGAGAAGGGGAATGTCACTGCAGGGGTGGATGTGGAAGGG
ACTGGGGTGAAGGTAGGGGCAGAGGGAGTGCAGGGTGTGTGCGACTCGTT
GTTCGTAAAGGACTCGGCGTTGCGGTTGGCGGTGGATGCGGCGCTGACGG
TGTTGAGGGTTGACCAGATTATCATGTCCAAGCCGGCAGGAGGGCCCAAG
CCTCCCGCCGGGGGGGGAGGAGATAAGGAATAAGGACCTACCTCCCTCCC
CAGCCCCCCCCTTTCCTCTCCTCCCTTCTTTTGGGCATGCAGGAGAGGGA
GGATGAGAGGAAGATTGGACGAATCGGCCTGAAGCACTTGTCGGTTTGGA
GAGAGAAGGGAAGAGAAGGGCGAAGGAGGAAGAAAAGCAGCAGCAAGAAG
AGCAGCTTCGTTAAAGGAGCACCTTAAAAAATTGAAGGAGAAGCAGGGAA
GTTAAGTTGGCATGGTGCATGATTGTGTGGTGTGGGGTAGCGTGATACTG
CTGCCAGATAAGGAAGGTGAGTGTGGAGGAGTGGAAGAGAGAAGAAAATG
GCAAGATAAGGTAGTCAAGGCACTGCAAACCGCAAACAAGATAAAAAAAA
GAGGGAGTTCCAGAAGAAAAAGAATAAAAACAAAATCAATCTTTTATACA
ACGAAGCTCGAAGC back to topprotein sequence of NO21G01380.1 >NO21G01380.1-protein ID=NO21G01380.1-protein|Name=NO21G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MSRGLNYNQAAGLQGMLKEGTKSMEGVDEAVIRNIEAAKQLARICSSSMG
PNGLKKLVVNHLEKIIVTSDCATILKELEVQHPAAKMLVLAAMMQEKECG
DATNLTVSFAGELLKKAEDLLHTGLHPSEIVAGYRTAFEKAMDILPTLTV
HTVDDPRDALQVSHVLESVLGTKYFGFQATLAPYVTQACQAVMPSAPKKP
SLNVDSVRVCKLQGGTIEDSLVMKGIVVSRSTEGTIKRALKAKVAVYGCG
IEASSTETKGTVLIRNAEDLLNYNKGEEKLMEDIIKGIAESGIAVVVTGG
SISEMALHFLERYKLMVVKIPSKWELRRLCGAVNATALVRLGPPTAEEAG
FVDVVEVREVGGRKITVFEQNAEESRVASIILRASTHNVLEDLERAVDDG
VNMVKVLCTDGRFLPGAGAVEIELARRIYKLADATTGLDQYAMRKFAEAL
EIVPRTLAESSGQDATDTVAALYAEHEKGNVTAGVDVEGTGVKVGAEGVQ
GVCDSLFVKDSALRLAVDAALTVLRVDQIIMSKPAGGPKPPAGGGGDKE* back to topmRNA from alignment at chr21:414373..416886- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01380.1 ID=NO21G01380.1|Name=NO21G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2514bp|location=Sequence derived from alignment at chr21:414373..416886- (Nannochloropsis oceanica)
CTCTACGAGATGAAAGAAGAGTTTTTGGGACGTCTTTGTGGTATTGGTCA
CTGTGACTGCTAGCTCCTCGTTCATAGCTACTCTCTATGAATGATGTGCC
TGGCATGTAGCGGCATCAGGTGCTGTCGGTTAATGCGGTCAAGGCTCATC
GCCAGAAGCGACTTTCGCACTCCACTCCACGCAGGAAGAAGCCGGGCGAA
GAACAAACTTTTGGATGCAGCACCAAACCCAAAACGTCAATACTCAAGCC
CGCTCATAGAGGTGCACCAGCGCCTCCTTCGTCCTTCATCACCGCGTCCT
AGTCGTGGTGGGATCGCCACTTTTCCCTTGCCTCTTTACCTCAGGTCTTG
CCGAGCCTCGCCTGCTCACGCCTCTCGCCTCACCCCCCACCATCCCATAT
TACAGAAAAAGAGGCGCCCCCAAAAACACAGCAATGTCACGCGGGCTGAA
TTATAACCAGGCCGCAGGCCTTCAAGGCATGCTCAAGGAAGGCACGAAAA
GCATGGAGGGGGTGGACGAGGCCGTCATCCGCAACATCGAAGCCGCTAAG
CAACTCGCCCGCATCTGCTCCTCCTCAATGGGACCGAATGGGCTCAAGAA
GCTCGTCGTGAACCACCTAGAGAAGATCATCGTCACCAGCGACTGTGCCA
CCATCCTGAAGGAATTGGAAGTGCAACATCCTGCTGCGAAAATGCTCGTG
TTGGCCGCCATGATGCAAGAAAAAGAATGCGGGGACGCGACCAACCTCAC
CGTGTCCTTCGCAGGAGAGCTCCTGAAAAAAGCTGAAGACCTTCTCCACA
CCGGTTTGCACCCAAGTGAAATCGTTGCCGGATACCGCACTGCTTTCGAA
AAGGCCATGGATATCCTCCCTACCCTCACGGTGCACACCGTGGACGACCC
CCGTGATGCTTTACAAGTCTCTCATGTCTTGGAGTCGGTTCTTGGGACGA
AATACTTTGGTTTCCAAGCTACTTTGGCCCCCTACGTCACACAGGCTTGC
CAAGCCGTCATGCCTTCGGCGCCGAAGAAACCGTCGTTGAATGTAGACTC
GGTCAGGGTATGCAAATTGCAAGGGGGGACGATAGAAGACAGTTTAGTGA
TGAAGGGCATTGTGGTGTCCAGGAGCACGGAGGGCACGATTAAAAGGGCC
CTCAAGGCGAAAGTGGCCGTGTATGGCTGTGGGATAGAGGCGTCTTCGAC
AGAAACGAAGGGAACAGTGCTGATTCGAAATGCGGAGGATTTGTTGAATT
ATAACAAGGGGGAGGAGAAGCTGATGGAGGACATCATTAAAGGGATTGCC
GAGAGCGGGATAGCAGTAGTGGTCACAGGCGGGTCGATCAGCGAAATGGC
TTTGCACTTCCTTGAGCGATACAAGTTGATGGTTGTCAAGATTCCATCCA
AGTGGGAGTTGAGGCGGTTGTGCGGTGCTGTGAATGCGACTGCGTTGGTG
AGGTTAGGCCCCCCCACGGCGGAGGAGGCGGGCTTTGTGGATGTGGTGGA
GGTGAGGGAGGTGGGGGGTAGGAAGATCACGGTGTTTGAGCAAAATGCGG
AGGAGAGTCGGGTGGCGAGTATCATCTTGAGGGCGAGCACGCATAACGTG
CTGGAGGACTTGGAGAGGGCGGTTGATGATGGGGTGAACATGGTGAAGGT
CTTGTGCACGGACGGTCGGTTCTTGCCGGGAGCGGGCGCCGTGGAGATCG
AGCTGGCGAGACGGATCTATAAGCTGGCGGATGCTACAACGGGGCTTGAT
CAGTACGCGATGAGGAAGTTCGCGGAGGCCTTGGAAATAGTGCCAAGGAC
CCTGGCAGAGAGCTCGGGGCAGGACGCGACTGATACGGTGGCGGCCCTGT
ACGCCGAGCACGAGAAGGGGAATGTCACTGCAGGGGTGGATGTGGAAGGG
ACTGGGGTGAAGGTAGGGGCAGAGGGAGTGCAGGGTGTGTGCGACTCGTT
GTTCGTAAAGGACTCGGCGTTGCGGTTGGCGGTGGATGCGGCGCTGACGG
TGTTGAGGGTTGACCAGATTATCATGTCCAAGCCGGCAGGAGGGCCCAAG
CCTCCCGCCGGGGGGGGAGGAGATAAGGAATAAGGACCTACCTCCCTCCC
CAGCCCCCCCCTTTCCTCTCCTCCCTTCTTTTGGGCATGCAGGAGAGGGA
GGATGAGAGGAAGATTGGACGAATCGGCCTGAAGCACTTGTCGGTTTGGA
GAGAGAAGGGAAGAGAAGGGCGAAGGAGGAAGAAAAGCAGCAGCAAGAAG
AGCAGCTTCGTTAAAGGAGCACCTTAAAAAATTGAAGGAGAAGCAGGGAA
GTTAAGTTGGCATGGTGCATGATTGTGTGGTGTGGGGTAGCGTGATACTG
CTGCCAGATAAGGAAGGTGAGTGTGGAGGAGTGGAAGAGAGAAGAAAATG
GCAAGATAAGGTAGTCAAGGCACTGCAAACCGCAAACAAGATAAAAAAAA
GAGGGAGTTCCAGAAGAAAAAGAATAAAAACAAAATCAATCTTTTATACA
ACGAAGCTCGAAGC back to topCoding sequence (CDS) from alignment at chr21:414373..416886- >NO21G01380.1 ID=NO21G01380.1|Name=NO21G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at chr21:414373..416886- (Nannochloropsis oceanica)
ATGTCACGCGGGCTGAATTATAACCAGGCCGCAGGCCTTCAAGGCATGCT
CAAGGAAGGCACGAAAAGCATGGAGGGGGTGGACGAGGCCGTCATCCGCA
ACATCGAAGCCGCTAAGCAACTCGCCCGCATCTGCTCCTCCTCAATGGGA
CCGAATGGGCTCAAGAAGCTCGTCGTGAACCACCTAGAGAAGATCATCGT
CACCAGCGACTGTGCCACCATCCTGAAGGAATTGGAAGTGCAACATCCTG
CTGCGAAAATGCTCGTGTTGGCCGCCATGATGCAAGAAAAAGAATGCGGG
GACGCGACCAACCTCACCGTGTCCTTCGCAGGAGAGCTCCTGAAAAAAGC
TGAAGACCTTCTCCACACCGGTTTGCACCCAAGTGAAATCGTTGCCGGAT
ACCGCACTGCTTTCGAAAAGGCCATGGATATCCTCCCTACCCTCACGGTG
CACACCGTGGACGACCCCCGTGATGCTTTACAAGTCTCTCATGTCTTGGA
GTCGGTTCTTGGGACGAAATACTTTGGTTTCCAAGCTACTTTGGCCCCCT
ACGTCACACAGGCTTGCCAAGCCGTCATGCCTTCGGCGCCGAAGAAACCG
TCGTTGAATGTAGACTCGGTCAGGGTATGCAAATTGCAAGGGGGGACGAT
AGAAGACAGTTTAGTGATGAAGGGCATTGTGGTGTCCAGGAGCACGGAGG
GCACGATTAAAAGGGCCCTCAAGGCGAAAGTGGCCGTGTATGGCTGTGGG
ATAGAGGCGTCTTCGACAGAAACGAAGGGAACAGTGCTGATTCGAAATGC
GGAGGATTTGTTGAATTATAACAAGGGGGAGGAGAAGCTGATGGAGGACA
TCATTAAAGGGATTGCCGAGAGCGGGATAGCAGTAGTGGTCACAGGCGGG
TCGATCAGCGAAATGGCTTTGCACTTCCTTGAGCGATACAAGTTGATGGT
TGTCAAGATTCCATCCAAGTGGGAGTTGAGGCGGTTGTGCGGTGCTGTGA
ATGCGACTGCGTTGGTGAGGTTAGGCCCCCCCACGGCGGAGGAGGCGGGC
TTTGTGGATGTGGTGGAGGTGAGGGAGGTGGGGGGTAGGAAGATCACGGT
GTTTGAGCAAAATGCGGAGGAGAGTCGGGTGGCGAGTATCATCTTGAGGG
CGAGCACGCATAACGTGCTGGAGGACTTGGAGAGGGCGGTTGATGATGGG
GTGAACATGGTGAAGGTCTTGTGCACGGACGGTCGGTTCTTGCCGGGAGC
GGGCGCCGTGGAGATCGAGCTGGCGAGACGGATCTATAAGCTGGCGGATG
CTACAACGGGGCTTGATCAGTACGCGATGAGGAAGTTCGCGGAGGCCTTG
GAAATAGTGCCAAGGACCCTGGCAGAGAGCTCGGGGCAGGACGCGACTGA
TACGGTGGCGGCCCTGTACGCCGAGCACGAGAAGGGGAATGTCACTGCAG
GGGTGGATGTGGAAGGGACTGGGGTGAAGGTAGGGGCAGAGGGAGTGCAG
GGTGTGTGCGACTCGTTGTTCGTAAAGGACTCGGCGTTGCGGTTGGCGGT
GGATGCGGCGCTGACGGTGTTGAGGGTTGACCAGATTATCATGTCCAAGC
CGGCAGGAGGGCCCAAGCCTCCCGCCGGGGGGGGAGGAGATAAGGAATAA back to top
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