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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr21 | genome | chr21:392557..394782 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01300.1 vs.
Match: EWM22650.1 (conserved oligomeric golgi complex subunit 6 [Nannochloropsis gaditana]) HSP 1 Score: 815.5 bits (2105), Expect = 1.400e-232 Identity = 451/720 (62.64%), Postives = 535/720 (74.31%), Query Frame = 0
Query: 3 RVLEQKVRKVVEGRTDTPAMLEALQAIAAFYGHREGGNTAEARKSLRQDLEKQNMVLCDRFLELFEVLQKRLAVLDAHTANLEGHCQGIHARIETAEESMSAFLARAHALKKQQADAEAKAAQITSFLDRFTLSDAEVAALRFEAVDKIIEGGQRPFFAAMTRVQEIRAGCGALVGSPQQSAGFEMLEALSEHQEAAFRRLHSWILQRCAGLERDDAAGDVEENDVALGLGLRTMRERSALFVHCQECLLQRRKDVVRRRFLQALSGAGLGG-SGESGGRREGRSLSGSGGQRPIEMQAHDPVRYLSDILAWLHQTVASEKEFLQNLL-----GAGAGEG-----GDKEKDEISASLSSSSGKQEMTQLEMLAGIMEGVAPLLKARIMHLVEPR---SFTN-SSVSSSNQLILSFRLLNLLAFYDVTLQTLGLGGSSKTTTIDSSSGTTPSSSAFGQVLRDTRAQAHHFFEAGLRQLGEAAMASPPAYPIDLSAADLTKDAGRQLTEILWVHESSLIPTEELGYEVDDVLTALVEPVLRACRLGAEGLDPSDAAVYMLNNAGMLYTCLVGSNSSSSSSGGCVGKWVERLKAEMETWLALLVKYQSEAVLERTGLGPLLERAVAVAASSSGTLSATAGLDAGTVGEVMKGFYQGLFSSPQFEKLDDPRMRARARQRTSKVIAEGHETAYKLFSKGENGYPEAGKFLIHTPEQVRILLDCEE 708
RVL+QKVRK+VE RTDTPAMLEALQAIAAFYG REGGNTAEARKSLRQDLEKQNMVLCD FL LFEVL++RLA LDAHTA LE HC GIHARIETAEESMSAFLA+ L+KQQ + E+KA Q+ FLD FTLSDAE+AALR+EAV+K++ G RPFFAA+ R QEIR CGALVGS +Q+ GFEMLE LSEHQE AFRRLHS+ILQRCAGLERDD +VEENDVALGLGLRT+R+R ALFVHCQEC+LQRRKDVVRRRFLQALSG G G+ + RS+SGS GQRPI+M +HDPVRYLSDILAWLHQ VASE+EFL NL G G+G G+ + S + QE++Q ML GIMEGV LLKARI+ L+EP TN S ++ +Q+ L FRLL+LLAFYDVT Q LGL T +SA G+ +R+TR + FE L G ++ S PA PIDLS A + + G+ L EI+ VHE+SL+P LGY +D+VLTAL+EP LRACR GAEGL PSD A+YM+NNA +L L S S V WVE+L+ EMETWL L+V+Y+SE VLERTGLGPLL+RA AV+ASSSGTLSATAGLD+ +V M+ FY+GLF+ PQFE+L P +RARARQ+TS +IA+ HE A+ LF + E+GYP+ FL HTPEQV+ILLDC++
Sbjct: 19 RVLKQKVRKMVECRTDTPAMLEALQAIAAFYGQREGGNTAEARKSLRQDLEKQNMVLCDDFLRLFEVLKERLAALDAHTARLEDHCHGIHARIETAEESMSAFLAKTRVLQKQQVECESKAVQLQDFLDNFTLSDAEIAALRYEAVEKVLPDGHRPFFAALARAQEIRGECGALVGSSRQNLGFEMLEELSEHQETAFRRLHSYILQRCAGLERDDPQEEVEENDVALGLGLRTIRDRPALFVHCQECVLQRRKDVVRRRFLQALSGRDEGAEDGDVREEKGKRSMSGS-GQRPIDMHSHDPVRYLSDILAWLHQAVASEREFLTNLFRPEAPGGSGGQGERPLPGEGVPTDGQESGTLEDHNQELSQAAMLGGIMEGVVALLKARILQLLEPADSYGVTNRESNATRSQIFLLFRLLHLLAFYDVTFQKLGL---------------TADASALGKSMRETRVECQRRFEGRLEAWGSQSLMSVPACPIDLSPAQVMGELGQSLAEIVAVHEASLVPPGALGYALDEVLTALIEPALRACRSGAEGLGPSDVALYMINNAAILSASL---TSGSDPPSPAVTAWVEKLREEMETWLGLVVRYESETVLERTGLGPLLDRAQAVSASSSGTLSATAGLDSESVTRTMEAFYRGLFTLPQFERLQQPALRARARQQTSAIIAQRHEKAHALFRRAESGYPDHETFLAHTPEQVKILLDCDD 719
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01300.1 ID=NO21G01300.1|Name=NO21G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp
ATGGAGCGCGTTCTGGAGCAGAAGGTACGCAAGGTCGTGGAGGGTCGCAC
CGACACGCCCGCCATGCTGGAAGCACTGCAAGCCATCGCCGCTTTTTATG
GGCACCGGGAGGGGGGCAACACGGCCGAGGCCCGCAAGTCCCTGCGGCAA
GATCTGGAGAAGCAAAACATGGTCCTGTGCGACCGCTTCTTGGAGTTGTT
CGAAGTGCTGCAAAAGCGGCTGGCGGTGTTGGACGCCCACACGGCCAACT
TAGAGGGTCATTGCCAGGGGATTCATGCCCGGATTGAGACGGCAGAAGAG
AGCATGAGTGCATTTCTCGCTCGGGCCCACGCCTTGAAAAAGCAACAAGC
AGACGCCGAGGCCAAAGCGGCGCAAATTACTTCTTTTCTGGACAGGTTTA
CCTTGTCGGACGCGGAAGTGGCCGCATTACGATTTGAGGCAGTGGATAAA
ATTATTGAGGGGGGACAGCGCCCCTTCTTTGCCGCCATGACACGCGTGCA
GGAAATCAGGGCAGGCTGTGGTGCCCTCGTAGGGTCACCACAGCAAAGCG
CAGGATTTGAGATGTTAGAAGCCTTGTCTGAGCATCAAGAGGCAGCTTTT
CGACGATTGCATTCGTGGATCCTGCAGCGGTGCGCGGGGTTGGAACGAGA
TGATGCTGCCGGAGATGTAGAGGAGAACGACGTGGCGTTGGGGTTGGGAT
TGAGGACGATGAGGGAACGCTCGGCGCTATTTGTTCATTGTCAAGAGTGC
TTATTGCAACGGAGAAAGGACGTGGTCCGACGGAGGTTTTTGCAGGCCCT
CTCAGGTGCTGGATTGGGTGGTAGTGGAGAAAGTGGGGGAAGGAGGGAGG
GGAGAAGCCTGAGTGGGAGTGGCGGACAGAGGCCAATTGAAATGCAGGCT
CATGACCCAGTGAGATATTTGAGTGATATCTTGGCGTGGCTTCATCAGAC
GGTTGCGTCGGAGAAGGAGTTTCTGCAGAACTTGCTCGGGGCGGGGGCAG
GGGAGGGAGGGGACAAGGAGAAAGATGAGATAAGCGCGTCGTTGTCATCG
TCGTCGGGGAAGCAAGAAATGACGCAGCTAGAGATGTTGGCAGGAATCAT
GGAAGGCGTCGCACCGTTACTCAAGGCCCGCATCATGCATCTAGTGGAGC
CCAGAAGCTTCACCAACAGCAGTGTTAGCAGCAGCAACCAGCTTATCCTT
AGCTTCCGCCTACTGAATCTCCTGGCATTCTACGACGTGACCCTCCAGAC
TCTTGGCCTTGGCGGTAGCAGTAAGACTACTACCATTGACAGCAGCAGCG
GTACCACTCCCTCCTCCTCTGCGTTCGGGCAAGTCCTCAGGGACACACGT
GCCCAGGCTCATCACTTCTTCGAAGCCGGGCTGCGTCAACTGGGAGAGGC
CGCCATGGCCTCCCCCCCTGCCTATCCCATCGATTTGTCTGCTGCGGATC
TGACGAAGGATGCAGGGAGGCAGCTCACGGAAATTCTGTGGGTGCACGAG
TCGTCCTTGATCCCGACGGAGGAGTTGGGGTATGAGGTAGACGATGTGTT
GACAGCCCTGGTCGAGCCCGTGTTACGTGCGTGTAGGTTGGGTGCAGAGG
GGCTGGACCCATCGGATGCTGCTGTGTACATGTTGAACAATGCGGGGATG
TTGTATACGTGTTTGGTCGGGAGTAATAGTAGCAGCAGCAGCAGTGGTGG
TTGTGTAGGGAAGTGGGTGGAGCGATTGAAGGCGGAGATGGAGACCTGGT
TGGCCTTGTTGGTGAAGTATCAATCCGAGGCCGTGCTAGAAAGGACGGGA
CTTGGGCCACTGTTGGAGAGAGCAGTGGCAGTGGCTGCGTCTTCGTCGGG
GACCCTGTCGGCCACGGCGGGATTGGACGCAGGAACTGTAGGGGAGGTCA
TGAAGGGCTTCTATCAGGGTTTGTTCTCCTCGCCTCAATTCGAGAAATTG
GATGATCCGCGGATGAGGGCAAGAGCGAGGCAAAGGACGTCAAAGGTGAT
TGCGGAGGGGCACGAGACGGCGTACAAATTGTTCAGCAAGGGGGAAAATG
GATACCCGGAAGCGGGGAAGTTTTTGATTCACACGCCCGAGCAGGTTCGG
ATTCTATTGGACTGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTATAGA
AAGGAGGAGTGAGGAGGAGGAGGAGGAAAGGGGGCTCACAATGAGGGTGA
ATGATGAATTTAAGCTTTGGAGGTAG back to topprotein sequence of NO21G01300.1 >NO21G01300.1-protein ID=NO21G01300.1-protein|Name=NO21G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=742bp
MERVLEQKVRKVVEGRTDTPAMLEALQAIAAFYGHREGGNTAEARKSLRQ
DLEKQNMVLCDRFLELFEVLQKRLAVLDAHTANLEGHCQGIHARIETAEE
SMSAFLARAHALKKQQADAEAKAAQITSFLDRFTLSDAEVAALRFEAVDK
IIEGGQRPFFAAMTRVQEIRAGCGALVGSPQQSAGFEMLEALSEHQEAAF
RRLHSWILQRCAGLERDDAAGDVEENDVALGLGLRTMRERSALFVHCQEC
LLQRRKDVVRRRFLQALSGAGLGGSGESGGRREGRSLSGSGGQRPIEMQA
HDPVRYLSDILAWLHQTVASEKEFLQNLLGAGAGEGGDKEKDEISASLSS
SSGKQEMTQLEMLAGIMEGVAPLLKARIMHLVEPRSFTNSSVSSSNQLIL
SFRLLNLLAFYDVTLQTLGLGGSSKTTTIDSSSGTTPSSSAFGQVLRDTR
AQAHHFFEAGLRQLGEAAMASPPAYPIDLSAADLTKDAGRQLTEILWVHE
SSLIPTEELGYEVDDVLTALVEPVLRACRLGAEGLDPSDAAVYMLNNAGM
LYTCLVGSNSSSSSSGGCVGKWVERLKAEMETWLALLVKYQSEAVLERTG
LGPLLERAVAVAASSSGTLSATAGLDAGTVGEVMKGFYQGLFSSPQFEKL
DDPRMRARARQRTSKVIAEGHETAYKLFSKGENGYPEAGKFLIHTPEQVR
ILLDCEEEEEEEEEGIERRSEEEEEERGLTMRVNDEFKLWR* back to topmRNA from alignment at chr21:392557..394782+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01300.1 ID=NO21G01300.1|Name=NO21G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at chr21:392557..394782+ (Nannochloropsis oceanica)
ATGGAGCGCGTTCTGGAGCAGAAGGTACGCAAGGTCGTGGAGGGTCGCAC
CGACACGCCCGCCATGCTGGAAGCACTGCAAGCCATCGCCGCTTTTTATG
GGCACCGGGAGGGGGGCAACACGGCCGAGGCCCGCAAGTCCCTGCGGCAA
GATCTGGAGAAGCAAAACATGGTCCTGTGCGACCGCTTCTTGGAGTTGTT
CGAAGTGCTGCAAAAGCGGCTGGCGGTGTTGGACGCCCACACGGCCAACT
TAGAGGGTCATTGCCAGGGGATTCATGCCCGGATTGAGACGGCAGAAGAG
AGCATGAGTGCATTTCTCGCTCGGGCCCACGCCTTGAAAAAGCAACAAGC
AGACGCCGAGGCCAAAGCGGCGCAAATTACTTCTTTTCTGGACAGGTTTA
CCTTGTCGGACGCGGAAGTGGCCGCATTACGATTTGAGGCAGTGGATAAA
ATTATTGAGGGGGGACAGCGCCCCTTCTTTGCCGCCATGACACGCGTGCA
GGAAATCAGGGCAGGCTGTGGTGCCCTCGTAGGGTCACCACAGCAAAGCG
CAGGATTTGAGATGTTAGAAGCCTTGTCTGAGCATCAAGAGGCAGCTTTT
CGACGATTGCATTCGTGGATCCTGCAGCGGTGCGCGGGGTTGGAACGAGA
TGATGCTGCCGGAGATGTAGAGGAGAACGACGTGGCGTTGGGGTTGGGAT
TGAGGACGATGAGGGAACGCTCGGCGCTATTTGTTCATTGTCAAGAGTGC
TTATTGCAACGGAGAAAGGACGTGGTCCGACGGAGGTTTTTGCAGGCCCT
CTCAGGTGCTGGATTGGGTGGTAGTGGAGAAAGTGGGGGAAGGAGGGAGG
GGAGAAGCCTGAGTGGGAGTGGCGGACAGAGGCCAATTGAAATGCAGGCT
CATGACCCAGTGAGATATTTGAGTGATATCTTGGCGTGGCTTCATCAGAC
GGTTGCGTCGGAGAAGGAGTTTCTGCAGAACTTGCTCGGGGCGGGGGCAG
GGGAGGGAGGGGACAAGGAGAAAGATGAGATAAGCGCGTCGTTGTCATCG
TCGTCGGGGAAGCAAGAAATGACGCAGCTAGAGATGTTGGCAGGAATCAT
GGAAGGCGTCGCACCGTTACTCAAGGCCCGCATCATGCATCTAGTGGAGC
CCAGAAGCTTCACCAACAGCAGTGTTAGCAGCAGCAACCAGCTTATCCTT
AGCTTCCGCCTACTGAATCTCCTGGCATTCTACGACGTGACCCTCCAGAC
TCTTGGCCTTGGCGGTAGCAGTAAGACTACTACCATTGACAGCAGCAGCG
GTACCACTCCCTCCTCCTCTGCGTTCGGGCAAGTCCTCAGGGACACACGT
GCCCAGGCTCATCACTTCTTCGAAGCCGGGCTGCGTCAACTGGGAGAGGC
CGCCATGGCCTCCCCCCCTGCCTATCCCATCGATTTGTCTGCTGCGGATC
TGACGAAGGATGCAGGGAGGCAGCTCACGGAAATTCTGTGGGTGCACGAG
TCGTCCTTGATCCCGACGGAGGAGTTGGGGTATGAGGTAGACGATGTGTT
GACAGCCCTGGTCGAGCCCGTGTTACGTGCGTGTAGGTTGGGTGCAGAGG
GGCTGGACCCATCGGATGCTGCTGTGTACATGTTGAACAATGCGGGGATG
TTGTATACGTGTTTGGTCGGGAGTAATAGTAGCAGCAGCAGCAGTGGTGG
TTGTGTAGGGAAGTGGGTGGAGCGATTGAAGGCGGAGATGGAGACCTGGT
TGGCCTTGTTGGTGAAGTATCAATCCGAGGCCGTGCTAGAAAGGACGGGA
CTTGGGCCACTGTTGGAGAGAGCAGTGGCAGTGGCTGCGTCTTCGTCGGG
GACCCTGTCGGCCACGGCGGGATTGGACGCAGGAACTGTAGGGGAGGTCA
TGAAGGGCTTCTATCAGGGTTTGTTCTCCTCGCCTCAATTCGAGAAATTG
GATGATCCGCGGATGAGGGCAAGAGCGAGGCAAAGGACGTCAAAGGTGAT
TGCGGAGGGGCACGAGACGGCGTACAAATTGTTCAGCAAGGGGGAAAATG
GATACCCGGAAGCGGGGAAGTTTTTGATTCACACGCCCGAGCAGGTTCGG
ATTCTATTGGACTGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTATAGA
AAGGAGGAGTGAGGAGGAGGAGGAGGAAAGGGGGCTCACAATGAGGGTGA
ATGATGAATTTAAGCTTTGGAGGTAG back to topCoding sequence (CDS) from alignment at chr21:392557..394782+ >NO21G01300.1 ID=NO21G01300.1|Name=NO21G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at chr21:392557..394782+ (Nannochloropsis oceanica)
ATGGAGCGCGTTCTGGAGCAGAAGGTACGCAAGGTCGTGGAGGGTCGCAC
CGACACGCCCGCCATGCTGGAAGCACTGCAAGCCATCGCCGCTTTTTATG
GGCACCGGGAGGGGGGCAACACGGCCGAGGCCCGCAAGTCCCTGCGGCAA
GATCTGGAGAAGCAAAACATGGTCCTGTGCGACCGCTTCTTGGAGTTGTT
CGAAGTGCTGCAAAAGCGGCTGGCGGTGTTGGACGCCCACACGGCCAACT
TAGAGGGTCATTGCCAGGGGATTCATGCCCGGATTGAGACGGCAGAAGAG
AGCATGAGTGCATTTCTCGCTCGGGCCCACGCCTTGAAAAAGCAACAAGC
AGACGCCGAGGCCAAAGCGGCGCAAATTACTTCTTTTCTGGACAGGTTTA
CCTTGTCGGACGCGGAAGTGGCCGCATTACGATTTGAGGCAGTGGATAAA
ATTATTGAGGGGGGACAGCGCCCCTTCTTTGCCGCCATGACACGCGTGCA
GGAAATCAGGGCAGGCTGTGGTGCCCTCGTAGGGTCACCACAGCAAAGCG
CAGGATTTGAGATGTTAGAAGCCTTGTCTGAGCATCAAGAGGCAGCTTTT
CGACGATTGCATTCGTGGATCCTGCAGCGGTGCGCGGGGTTGGAACGAGA
TGATGCTGCCGGAGATGTAGAGGAGAACGACGTGGCGTTGGGGTTGGGAT
TGAGGACGATGAGGGAACGCTCGGCGCTATTTGTTCATTGTCAAGAGTGC
TTATTGCAACGGAGAAAGGACGTGGTCCGACGGAGGTTTTTGCAGGCCCT
CTCAGGTGCTGGATTGGGTGGTAGTGGAGAAAGTGGGGGAAGGAGGGAGG
GGAGAAGCCTGAGTGGGAGTGGCGGACAGAGGCCAATTGAAATGCAGGCT
CATGACCCAGTGAGATATTTGAGTGATATCTTGGCGTGGCTTCATCAGAC
GGTTGCGTCGGAGAAGGAGTTTCTGCAGAACTTGCTCGGGGCGGGGGCAG
GGGAGGGAGGGGACAAGGAGAAAGATGAGATAAGCGCGTCGTTGTCATCG
TCGTCGGGGAAGCAAGAAATGACGCAGCTAGAGATGTTGGCAGGAATCAT
GGAAGGCGTCGCACCGTTACTCAAGGCCCGCATCATGCATCTAGTGGAGC
CCAGAAGCTTCACCAACAGCAGTGTTAGCAGCAGCAACCAGCTTATCCTT
AGCTTCCGCCTACTGAATCTCCTGGCATTCTACGACGTGACCCTCCAGAC
TCTTGGCCTTGGCGGTAGCAGTAAGACTACTACCATTGACAGCAGCAGCG
GTACCACTCCCTCCTCCTCTGCGTTCGGGCAAGTCCTCAGGGACACACGT
GCCCAGGCTCATCACTTCTTCGAAGCCGGGCTGCGTCAACTGGGAGAGGC
CGCCATGGCCTCCCCCCCTGCCTATCCCATCGATTTGTCTGCTGCGGATC
TGACGAAGGATGCAGGGAGGCAGCTCACGGAAATTCTGTGGGTGCACGAG
TCGTCCTTGATCCCGACGGAGGAGTTGGGGTATGAGGTAGACGATGTGTT
GACAGCCCTGGTCGAGCCCGTGTTACGTGCGTGTAGGTTGGGTGCAGAGG
GGCTGGACCCATCGGATGCTGCTGTGTACATGTTGAACAATGCGGGGATG
TTGTATACGTGTTTGGTCGGGAGTAATAGTAGCAGCAGCAGCAGTGGTGG
TTGTGTAGGGAAGTGGGTGGAGCGATTGAAGGCGGAGATGGAGACCTGGT
TGGCCTTGTTGGTGAAGTATCAATCCGAGGCCGTGCTAGAAAGGACGGGA
CTTGGGCCACTGTTGGAGAGAGCAGTGGCAGTGGCTGCGTCTTCGTCGGG
GACCCTGTCGGCCACGGCGGGATTGGACGCAGGAACTGTAGGGGAGGTCA
TGAAGGGCTTCTATCAGGGTTTGTTCTCCTCGCCTCAATTCGAGAAATTG
GATGATCCGCGGATGAGGGCAAGAGCGAGGCAAAGGACGTCAAAGGTGAT
TGCGGAGGGGCACGAGACGGCGTACAAATTGTTCAGCAAGGGGGAAAATG
GATACCCGGAAGCGGGGAAGTTTTTGATTCACACGCCCGAGCAGGTTCGG
ATTCTATTGGACTGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTATAGA
AAGGAGGAGTGAGGAGGAGGAGGAGGAAAGGGGGCTCACAATGAGGGTGA
ATGATGAATTTAAGCTTTGGAGGTAG back to top
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