|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr21 | genome | chr21:324095..326962 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01020.2 vs.
Match: EWM22594.1 (glutathione s-transferase omega-like protein [Nannochloropsis gaditana]) HSP 1 Score: 510.4 bits (1313), Expect = 6.900e-141 Identity = 314/533 (58.91%), Postives = 348/533 (65.29%), Query Frame = 0
Query: 7 MRLSRPALRPSHLCLALCILLDPLNAFNPQLPSSSFHRTIKGN---TAFPSSNSPHSFASPAAAAVTCMRPCRRHVLIMDAASAGGWPPYHGDNDDSSSSSGGSGGQGSNSGGSEFGGIGSSSGISSSPSSAANVPASFPPPPSSFFN-------PDFEDDDQHVGTHNS--EDSDSDSASSSTSSTRIDGSCTLGKRVPWIEGRATSEAQGSLSANTRRRARLHSHRHGGMEDKGEGRGGNGRRD---------------EEKRKGPAKFSGVRTSLSETDEQGRFVRSPSVHRNWIEPEGKYRSEADRYHLYVSLACPWSARCLMVLYLKGLDNAISISVTHPTWTRTRINDELDHHTGWVFRSSFDPPLSSPAGWGAFSCDGCIPDYINGARTIRDLYELSKDTEGKYTVPVLWDKATSTIVNNESGDIMKMLNDNFNFLAMNPTLNLKPLELAKAVDQYNLWLHENINDGVYKCGFATSQAAYEEAVEGVVGAMDHAEALLGRQRYLLGDRLTEADVRLFPTLVRFDEV 513
MR AL P LCL L LL PL AF PS RT K N +AF S + ++ + RP RHVL M+A GGWP HGD DDS +G SN G SE G+ S +SS P VP FP P S PD D+ H S E D + + T T G LG RVPWIEGR A S ++ RRAR R E G+GRG GRR+ KR GP F G+RTSLSETDEQGRFVRSPSVHRNW+ P+ KYR + +RYHLYVSLACPWS RCLMVLYLKGLDN ISISVTHPTW RTR+NDELDHHTGWVFR+ DPP+SSPAGWG F C GCIPDY+NGART+R+LYE S+DTEGK+TVP+LWDK T TIVNNESGDI++MLND FN AMNP LNL P EL KA+DQY WLHE +NDGVYKCGFATSQ AYEEAVEGVVGAMDH EALLGRQRYLLGDRLTEADVRLF TLVRFDEV
Sbjct: 1 MRSRMLALGPPLLCLPL--LLQPLFAFFHVAPSYPLQRTKKINCCQSAFISLSGMSAYPKYRSLG----RPRGRHVLRMEAD--GGWPTAHGDGDDSGYHNGIPSDLSSN-GNSEVSEDGTGS-LSSPPF----VP--FPLFPFSDCGEAAMAQFPDMTDEGLHSDVEGSTHECGDGEKRTRGTDITGRGGRA-LGGRVPWIEGRLDRVA--SFLFSSHRRARQLRRR---TEGAGDGRGAEGRREGGGHAAGQANKGRDMSGKRGGPTAFRGIRTSLSETDEQGRFVRSPSVHRNWVGPQAKYRPQPNRYHLYVSLACPWSCRCLMVLYLKGLDNVISISVTHPTWARTRLNDELDHHTGWVFRAQSDPPVSSPAGWGRFPCHGCIPDYVNGARTVRELYEESRDTEGKFTVPILWDKRTGTIVNNESGDIIRMLNDQFNEWAMNPNLNLFPYELGKALDQYGDWLHETLNDGVYKCGFATSQPAYEEAVEGVVGAMDHLEALLGRQRYLLGDRLTEADVRLFQTLVRFDEV 511
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01020.2 ID=NO21G01020.2|Name=NO21G01020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2555bp
ACAGGTTGTCGGTGTTGCTCTCGTGTTTCAGGCGGAATTTTCATTTTTTG
CTGTCACGCCGTGGTCCAGTGGCGCTCTCTCCTAACCCTCGCCTCGAACC
CGTCGCTTGAAGTAAGCTCAGCAGCTCCTCAACCCACACAAACGTCAACA
CTACCTATCCCACGCTTTCCATCACGCTGCCGTCAAAATAGGGTCGCTGA
CCATTCCATGTCCTCTCCTATGGTAATGCGACTGTCGCGCCCGGCTCTCC
GTCCCTCCCATTTGTGCCTCGCCCTGTGCATCTTACTCGATCCCCTCAAC
GCCTTCAACCCGCAGTTGCCCTCGTCGTCTTTTCACCGGACCATTAAAGG
GAACACTGCTTTCCCCTCTTCTAATTCTCCTCATTCTTTTGCGTCTCCAG
CTGCTGCTGCTGTAACATGCATGCGCCCATGTCGTCGTCACGTCCTTATC
ATGGACGCTGCCAGTGCAGGAGGCTGGCCCCCATATCACGGCGACAACGA
CGACAGCAGTAGCAGCAGCGGGGGCAGCGGTGGGCAGGGCAGCAACAGTG
GTGGAAGTGAATTCGGTGGGATTGGGAGTAGTAGTGGCATTTCATCCTCC
CCTTCTTCTGCCGCCAATGTGCCTGCGTCATTTCCTCCTCCCCCCTCGTC
TTTTTTTAACCCTGACTTTGAGGATGATGACCAGCACGTTGGTACCCACA
ACAGCGAGGACAGCGATAGTGATAGTGCCAGCAGTAGCACTAGTAGCACC
AGGATTGACGGTAGCTGCACCCTGGGGAAAAGAGTTCCTTGGATCGAGGG
CCGCGCGACTTCCGAAGCCCAAGGCTCCCTCTCTGCCAACACTCGCCGCC
GCGCGCGTCTCCACAGCCACCGACATGGAGGGATGGAGGACAAGGGTGAA
GGAAGAGGGGGGAATGGTAGGAGGGATGAAGAGAAGAGAAAGGGGCCTGC
GAAATTTAGTGGGGTTAGGACGTCGCTCAGCGAGACGGATGAACAGGGGA
GGTTTGTCCGCAGTCCGAGCGTGCATAGGAACTGGATAGAGCCCGAAGGG
AAATATCGGTCAGAGGCGGATAGGTACCATCTCTACGTGTCCTTGGCCTG
CCCCTGGTCGGCTCGGTGTTTGATGGTGCTTTATTTGAAAGGCCTCGACA
ATGCCATCTCCATCAGCGTTACGCACCCCACGTGGACACGTACCCGGATC
AACGACGAGCTGGACCACCATACGGGATGGGTTTTCCGCTCCTCCTTCGA
CCCTCCCCTCTCGTCCCCCGCCGGATGGGGCGCCTTCTCGTGCGACGGCT
GCATCCCTGATTACATCAACGGGGCCAGGACAATTCGCGACTTATATGAA
CTATCCAAGGATACAGAGGGGAAATACACGGTGCCCGTGCTCTGGGACAA
GGCGACTTCCACCATTGTGAATAATGAGAGCGGGGACATCATGAAGATGC
TGAACGACAATTTCAATTTTCTGGCGATGAATCCCACGTTGAATCTGAAG
CCCTTAGAGCTGGCGAAGGCCGTGGACCAGTACAATCTGTGGCTACATGA
GAACATCAACGATGGCGTGTATAAGTGTGGGTTTGCCACCAGCCAGGCCG
CGTACGAGGAGGCAGTTGAGGGCGTGGTGGGGGCCATGGATCATGCGGAG
GCTTTACTTGGGCGACAGCGGTATCTGTTGGGGGATCGGTTGACAGAAGC
GGACGTTCGCTTGTTCCCGACGTTGGTGCGATTTGATGAGGTAAGCGAGG
GAGGAAAGAAGGAAGGGAGTGGGAAGGTTCCAGGTTGTGTTGTCTTATCC
TTTTTTGTTTTTTGTCTTTTAACTTAGGAATGGTCATCATCGACCTTGAA
ATATCCCCGCGATTTAAGTGATAATCATCACATACCTAAATCGATATATC
CCATTTCTCTCAATTATCCACAGGTATACAACCCCCACTTCAAATGCAAT
CGCAAATCCATCCTAAAAGACTACCCCAACCTTCTCAACTACGCTCGGGA
GATCTTCCAGCTGCCGGGCGTTGCCCTCTCAGTCAATATGCAGCACATTA
AGACGCATTATTATTCCTCACACCCGACATTGGAGCATTTTGCGATGGTC
CCAGCCGGGCCTCGGTTTTTGCACGAGCTGTACAAGGCGCATGACCGGGA
GAGATTCCCTCGGAGAAGGGTCGGGTTGTGGTAGGGTGGGTGCGAGGGAG
GGAGGATGAGAGGGAGGGGGTTGTGGGGCTAGATCCCACATTGTGGCACA
TTGTGGGAGGAAAGGAGCGGGAGGGGGAAAAGGGACGAGTAGAGCACTAC
GGTTATTGATATTTTCATTCAAACATTTTTGACTTTCCCCTCAGTCTCCG
TAGTTTTTGAAAGGATTTGGCTTCGATTGCGCACAAAAGCTGCCATCGTC
GCTTGGGTTGCGAAGCCAAACAAAAAAATATCTTTGTAGATAGGTAGCCA
TTCAATTTGAAAGAAGAAAAGAAGGTGGTATAAATTGGCATATATATACA
TATATAGGTGCCCTTGGCTTGGGGGGCACATGACGCCTGCTTCAACTCGT
TCAAC back to topprotein sequence of NO21G01020.2 >NO21G01020.2-protein ID=NO21G01020.2-protein|Name=NO21G01020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MSSPMVMRLSRPALRPSHLCLALCILLDPLNAFNPQLPSSSFHRTIKGNT
AFPSSNSPHSFASPAAAAVTCMRPCRRHVLIMDAASAGGWPPYHGDNDDS
SSSSGGSGGQGSNSGGSEFGGIGSSSGISSSPSSAANVPASFPPPPSSFF
NPDFEDDDQHVGTHNSEDSDSDSASSSTSSTRIDGSCTLGKRVPWIEGRA
TSEAQGSLSANTRRRARLHSHRHGGMEDKGEGRGGNGRRDEEKRKGPAKF
SGVRTSLSETDEQGRFVRSPSVHRNWIEPEGKYRSEADRYHLYVSLACPW
SARCLMVLYLKGLDNAISISVTHPTWTRTRINDELDHHTGWVFRSSFDPP
LSSPAGWGAFSCDGCIPDYINGARTIRDLYELSKDTEGKYTVPVLWDKAT
STIVNNESGDIMKMLNDNFNFLAMNPTLNLKPLELAKAVDQYNLWLHENI
NDGVYKCGFATSQAAYEEAVEGVVGAMDHAEALLGRQRYLLGDRLTEADV
RLFPTLVRFDEVSEGGKKEGSGKVPGCVVLSFFVFCLLT* back to topmRNA from alignment at chr21:324095..326962+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01020.2 ID=NO21G01020.2|Name=NO21G01020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2868bp|location=Sequence derived from alignment at chr21:324095..326962+ (Nannochloropsis oceanica)
ACAGGTTGTCGGTGTTGCTCTCGTGTTTCAGGCGGAATTTTCATTTTTTG
CTGTCACGCCGTGGTCCAGTGGCGCTCTCTCCTAACCCTCGCCTCGAACC
CGTCGCTTGAAGTAAGCTCAGCAGCTCCTCAACCCACACAAACGTCAACA
CTACCTATCCCACGCTTTCCATCACGCTGCCGTCAAAATAGGGTCGCTGA
CCATTCCATGTCCTCTCCTATGGTAATGCGACTGTCGCGCCCGGCTCTCC
GTCCCTCCCATTTGTGCCTCGCCCTGTGCATCTTACTCGATCCCCTCAAC
GCCTTCAACCCGCAGTTGCCCTCGTCGTCTTTTCACCGGACCATTAAAGG
GAACACTGCTTTCCCCTCTTCTAATTCTCCTCATTCTTTTGCGTCTCCAG
CTGCTGCTGCTGTAACATGCATGCGCCCATGTCGTCGTCACGTCCTTATC
ATGGACGCTGCCAGTGCAGGAGGCTGGCCCCCATATCACGGCGACAACGA
CGACAGCAGTAGCAGCAGCGGGGGCAGCGGTGGGCAGGGCAGCAACAGTG
GTGGAAGTGAATTCGGTGGGATTGGGAGTAGTAGTGGCATTTCATCCTCC
CCTTCTTCTGCCGCCAATGTGCCTGCGTCATTTCCTCCTCCCCCCTCGTC
TTTTTTTAACCCTGACTTTGAGGATGATGACCAGCACGTTGGTACCCACA
ACAGCGAGGACAGCGATAGTGATAGTGCCAGCAGTAGCACTAGTAGCACC
AGGATTGACGGTAGCTGCACCCTGGGGAAAAGAGTTCCTTGGATCGAGGT
AAGTGAAGGGTGGAGGGACGGAGGAAGGGACGGATGCATGGCATGTGCTG
CGTTTGCGGGTTGTGAGTTATCTTGGTGTAAAGACACGGTACTACTCCCT
TCCCTCCTTTTGGTATCATGAATTATGATGCCTTCATCCTCTCTCCCTCC
TTCACCCTCCTTCCCTTTACCCTACCTACCCACTCATTCCCAAAAAATAG
GGCCGCGCGACTTCCGAAGCCCAAGGCTCCCTCTCTGCCAACACTCGCCG
CCGCGCGCGTCTCCACAGCCACCGACATGGAGGGATGGAGGACAAGGGTG
AAGGAAGAGGGGGGAATGGTAGGAGGGATGAAGAGAAGAGAAAGGGGCCT
GCGAAATTTAGTGGGGTTAGGACGTCGCTCAGCGAGACGGATGAACAGGG
GAGGTTTGTCCGCAGTCCGAGCGTGCATAGGAACTGGATAGAGCCCGAAG
GGAAATATCGGTCAGAGGCGGATAGGTACCATCTCTACGTGTCCTTGGCC
TGCCCCTGGTCGGCTCGGTGTTTGATGGTGCTTTATTTGAAAGGTACATG
AGGTGTTGCGCCTCCCCCCCCTCCTTTCCTCCCTCCCTTCCTTTCTCCTA
CCCTCCTACCCTCTCCTCCCTCTCATGCTTGCACATGCCCCCTCTCCCCC
TTAGGCCTCGACAATGCCATCTCCATCAGCGTTACGCACCCCACGTGGAC
ACGTACCCGGATCAACGACGAGCTGGACCACCATACGGGATGGGTTTTCC
GCTCCTCCTTCGACCCTCCCCTCTCGTCCCCCGCCGGATGGGGCGCCTTC
TCGTGCGACGGCTGCATCCCTGATTACATCAACGGGGCCAGGACAATTCG
CGACTTATATGAACTATCCAAGGATACAGAGGGGAAATACACGGTGCCCG
TGCTCTGGGACAAGGCGACTTCCACCATTGTGAATAATGAGAGCGGGGAC
ATCATGAAGATGCTGAACGACAATTTCAATTTTCTGGCGATGAATCCCAC
GTTGAATCTGAAGCCCTTAGAGCTGGCGAAGGCCGTGGACCAGTACAATC
TGTGGCTACATGAGAACATCAACGATGGCGTGTATAAGTGTGGGTTTGCC
ACCAGCCAGGCCGCGTACGAGGAGGCAGTTGAGGGCGTGGTGGGGGCCAT
GGATCATGCGGAGGCTTTACTTGGGCGACAGCGGTATCTGTTGGGGGATC
GGTTGACAGAAGCGGACGTTCGCTTGTTCCCGACGTTGGTGCGATTTGAT
GAGGTAAGCGAGGGAGGAAAGAAGGAAGGGAGTGGGAAGGTTCCAGGTTG
TGTTGTCTTATCCTTTTTTGTTTTTTGTCTTTTAACTTAGGAATGGTCAT
CATCGACCTTGAAATATCCCCGCGATTTAAGTGATAATCATCACATACCT
AAATCGATATATCCCATTTCTCTCAATTATCCACAGGTATACAACCCCCA
CTTCAAATGCAATCGCAAATCCATCCTAAAAGACTACCCCAACCTTCTCA
ACTACGCTCGGGAGATCTTCCAGCTGCCGGGCGTTGCCCTCTCAGTCAAT
ATGCAGCACATTAAGACGCATTATTATTCCTCACACCCGACATTGGAGCA
TTTTGCGATGGTCCCAGCCGGGCCTCGGTTTTTGCACGAGCTGTACAAGG
CGCATGACCGGGAGAGATTCCCTCGGAGAAGGGTCGGGTTGTGGTAGGGT
GGGTGCGAGGGAGGGAGGATGAGAGGGAGGGGGTTGTGGGGCTAGATCCC
ACATTGTGGCACATTGTGGGAGGAAAGGAGCGGGAGGGGGAAAAGGGACG
AGTAGAGCACTACGGTTATTGATATTTTCATTCAAACATTTTTGACTTTC
CCCTCAGTCTCCGTAGTTTTTGAAAGGATTTGGCTTCGATTGCGCACAAA
AGCTGCCATCGTCGCTTGGGTTGCGAAGCCAAACAAAAAAATATCTTTGT
AGATAGGTAGCCATTCAATTTGAAAGAAGAAAAGAAGGTGGTATAAATTG
GCATATATATACATATATAGGTGCCCTTGGCTTGGGGGGCACATGACGCC
TGCTTCAACTCGTTCAAC back to topCoding sequence (CDS) from alignment at chr21:324095..326962+ >NO21G01020.2 ID=NO21G01020.2|Name=NO21G01020.2|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr21:324095..326962+ (Nannochloropsis oceanica)
ATGTCCTCTCCTATGGTAATGCGACTGTCGCGCCCGGCTCTCCGTCCCTC
CCATTTGTGCCTCGCCCTGTGCATCTTACTCGATCCCCTCAACGCCTTCA
ACCCGCAGTTGCCCTCGTCGTCTTTTCACCGGACCATTAAAGGGAACACT
GCTTTCCCCTCTTCTAATTCTCCTCATTCTTTTGCGTCTCCAGCTGCTGC
TGCTGTAACATGCATGCGCCCATGTCGTCGTCACGTCCTTATCATGGACG
CTGCCAGTGCAGGAGGCTGGCCCCCATATCACGGCGACAACGACGACAGC
AGTAGCAGCAGCGGGGGCAGCGGTGGGCAGGGCAGCAACAGTGGTGGAAG
TGAATTCGGTGGGATTGGGAGTAGTAGTGGCATTTCATCCTCCCCTTCTT
CTGCCGCCAATGTGCCTGCGTCATTTCCTCCTCCCCCCTCGTCTTTTTTT
AACCCTGACTTTGAGGATGATGACCAGCACGTTGGTACCCACAACAGCGA
GGACAGCGATAGTGATAGTGCCAGCAGTAGCACTAGTAGCACCAGGATTG
ACGGTAGCTGCACCCTGGGGAAAAGAGTTCCTTGGATCGAGGGCCGCGCG
ACTTCCGAAGCCCAAGGCTCCCTCTCTGCCAACACTCGCCGCCGCGCGCG
TCTCCACAGCCACCGACATGGAGGGATGGAGGACAAGGGTGAAGGAAGAG
GGGGGAATGGTAGGAGGGATGAAGAGAAGAGAAAGGGGCCTGCGAAATTT
AGTGGGGTTAGGACGTCGCTCAGCGAGACGGATGAACAGGGGAGGTTTGT
CCGCAGTCCGAGCGTGCATAGGAACTGGATAGAGCCCGAAGGGAAATATC
GGTCAGAGGCGGATAGGTACCATCTCTACGTGTCCTTGGCCTGCCCCTGG
TCGGCTCGGTGTTTGATGGTGCTTTATTTGAAAGGCCTCGACAATGCCAT
CTCCATCAGCGTTACGCACCCCACGTGGACACGTACCCGGATCAACGACG
AGCTGGACCACCATACGGGATGGGTTTTCCGCTCCTCCTTCGACCCTCCC
CTCTCGTCCCCCGCCGGATGGGGCGCCTTCTCGTGCGACGGCTGCATCCC
TGATTACATCAACGGGGCCAGGACAATTCGCGACTTATATGAACTATCCA
AGGATACAGAGGGGAAATACACGGTGCCCGTGCTCTGGGACAAGGCGACT
TCCACCATTGTGAATAATGAGAGCGGGGACATCATGAAGATGCTGAACGA
CAATTTCAATTTTCTGGCGATGAATCCCACGTTGAATCTGAAGCCCTTAG
AGCTGGCGAAGGCCGTGGACCAGTACAATCTGTGGCTACATGAGAACATC
AACGATGGCGTGTATAAGTGTGGGTTTGCCACCAGCCAGGCCGCGTACGA
GGAGGCAGTTGAGGGCGTGGTGGGGGCCATGGATCATGCGGAGGCTTTAC
TTGGGCGACAGCGGTATCTGTTGGGGGATCGGTTGACAGAAGCGGACGTT
CGCTTGTTCCCGACGTTGGTGCGATTTGATGAGGTAAGCGAGGGAGGAAA
GAAGGAAGGGAGTGGGAAGGTTCCAGGTTGTGTTGTCTTATCCTTTTTTG
TTTTTTGTCTTTTAACTTAG back to top
|