NO21G00120.1, NO21G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00120.1
Unique NameNO21G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length204
Alignment locationchr21:34461..35230 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:34461..35230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00120.1 vs.
Match: XP_009825435.1 (hypothetical protein H257_03157 [Aphanomyces astaci]; ETV85417.1 hypothetical protein H257_03157 [Aphanomyces astaci])

HSP 1 Score: 88.6 bits (218), Expect = 8.200e-15
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0 
Query:    1 MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEWLKCIDKHSAKAVLKALK 68
            MA E+PVD MPEIR+  +PKC   +K Y+ CVDRITA+GDG C+ QY ++LKCIDK S   + K LK
Sbjct:    1 MAGEDPVDVMPEIRKACEPKCVESFKLYRACVDRITAKGDGACDGQYFDYLKCIDKCSVPQLFKHLK 67
The following BLAST results are available for this feature:
BLAST of NO21G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009825435.18.200e-1558.21hypothetical protein H257_03157 [Aphanomyces astac... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00120NO21G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00120.1NO21G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00120.1.cds1NO21G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00120.1.cds2NO21G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00120.1.cds3NO21G00120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00120.1.cds4NO21G00120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00120.1 ID=NO21G00120.1|Name=NO21G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=204bp
ATGGCGGACGAAGAGCCTGTGGATACCATGCCAGAGATCCGGGAGAAGGT
CAAGCCCAAGTGTGCGGCAGACTGGAAAGACTATCAGGGCTGCGTGGATC
GTATCACCGCCCGAGGAGACGGGACGTGCGAGCCCCAGTACATGGAGTGG
CTCAAATGCATCGACAAGCACAGCGCCAAGGCGGTTCTGAAGGCACTAAA
GTAA
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protein sequence of NO21G00120.1

>NO21G00120.1-protein ID=NO21G00120.1-protein|Name=NO21G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MADEEPVDTMPEIREKVKPKCAADWKDYQGCVDRITARGDGTCEPQYMEW
LKCIDKHSAKAVLKALK*
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mRNA from alignment at chr21:34461..35230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00120.1 ID=NO21G00120.1|Name=NO21G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=770bp|location=Sequence derived from alignment at chr21:34461..35230- (Nannochloropsis oceanica)
ATGGTAAGCCCTATACTGTATATATTCCCTTCTCCCTTTCTCCCTCCTTC
CCTCTGGTCATCCCTCACGCCCATTCCCCCCCTTCCTCGTTCCACGCGAT
CATCAGGCGGACGAAGAGCCTGTGGATACCATGCCAGAGATCCGGGAGAA
GGTCAAGCCCAAGTGTGCGGCAGACTGGAAAGACTATCAGGTACGGGAAG
GGGGAAGGGAGGGATGCAGCAAGGGAAAAGCAAGTGGAGGGAGCCAGTCT
TCAAAACAAGAAAAGAGACTGACGTGTGCAGCAGCAGCGGCGGCGTCTGC
AGCCACCCCATGACAAAGGTAGTAATTGCAGCAGGCAGGAGAAGCCACGC
GTATCTAGAGAGAGGGCTATCGTGGGGGATGCAAGGAAGAAGGCGGAAGA
GCCTATGGAATAATACATGCTCAGTACAAGAAAACCTTCCTCCTCACTCC
TTCACTCCTTCCCTCCCTTCCTATCTCTCTTCCTCCCTGTCTTCAATCCG
GTATCAGGGCTGCGTGGATCGTATCACCGCCCGAGGAGACGGGACGTGCG
AGCCCCAGTACATGGAGTGGCTCAAATGCATCGACAAGCACGTGCGTACA
CGCCCTCCCTCCCCCTTTCCTTCCTTGGCTCCCTTTTTCCTTTACTCCTT
TCCAACCTTTCTTTGGACTATACAGTTCATTTTCCGGTCTCTGACTTTCT
CCTCTCCTCCCCCCCCCCTTCATTTCTCAAATTACAGAGCGCCAAGGCGG
TTCTGAAGGCACTAAAGTAA
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Coding sequence (CDS) from alignment at chr21:34461..35230-

>NO21G00120.1 ID=NO21G00120.1|Name=NO21G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=204bp|location=Sequence derived from alignment at chr21:34461..35230- (Nannochloropsis oceanica)
ATGGCGGACGAAGAGCCTGTGGATACCATGCCAGAGATCCGGGAGAAGGT
CAAGCCCAAGTGTGCGGCAGACTGGAAAGACTATCAGGGCTGCGTGGATC
GTATCACCGCCCGAGGAGACGGGACGTGCGAGCCCCAGTACATGGAGTGG
CTCAAATGCATCGACAAGCACAGCGCCAAGGCGGTTCTGAAGGCACTAAA
GTAA
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Synonyms
Publications