NO21G00050.2, NO21G00050.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00050.2
Unique NameNO21G00050.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1094
Alignment locationchr21:14399..16405 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:14399..16405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00050.2 vs.
Match: XP_005855615.1 (peroxisomal trans-2-enoyl-CoA reductase [Nannochloropsis gaditana CCMP526]; EKU20746.1 peroxisomal trans-2-enoyl-CoA reductase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 366.3 bits (939), Expect = 7.000e-98
Identity = 181/223 (81.17%), Postives = 204/223 (91.48%), Query Frame = 0 
Query:    8 LTPYKAGLFSGKGVIVTGGGTGLGYAIARELVSLGAQVVIAARRLDILEQAAAELNKESGKTGGKVHVCRCNVRSEEDIQELVTFALEKMGRIDGLVNNAGGQFVSPVENISARGFKAVVETNLLSCFMLSKEVYNRWWSQQEGSSGSGSIVNIILANKNGFPMMAHSGAARAGVENLTKSMALEWVGKGVRVNCVAPGIVYTESGFANYGYVYIFVLHASIP 231
            LTP+KAGLF GK +IVTGGGTGLGYAIA+ELVSLGA+VVIAARR+++LE AA+E+NK S + GGK++VC+CNVR+E+DIQ+LVTFALE MG IDGLVNNAGGQFVSPVENISARGFKAVVETNLLSCFMLSKE+YNRWWSQQE    SGSIVNIILANKNGFPMMAHSGAARAGVENLTKSMALEW+G+GVRVNCVAPGI+YTESGFANYG +    L + +P
Sbjct:    6 LTPFKAGLFVGKSIIVTGGGTGLGYAIAKELVSLGAKVVIAARRIEVLEAAASEMNK-SSQRGGKIYVCQCNVRNEDDIQKLVTFALETMGGIDGLVNNAGGQFVSPVENISARGFKAVVETNLLSCFMLSKEIYNRWWSQQEDRKRSGSIVNIILANKNGFPMMAHSGAARAGVENLTKSMALEWIGRGVRVNCVAPGIIYTESGFANYGEMAGAFLSSVLP 227
The following BLAST results are available for this feature:
BLAST of NO21G00050.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855615.17.000e-9881.17peroxisomal trans-2-enoyl-CoA reductase [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00050NO21G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00050.2NO21G00050.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00050.2.cds1NO21G00050.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00050.2.cds2NO21G00050.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00050.2.cds3NO21G00050.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00050.2.cds4NO21G00050.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00050.2 ID=NO21G00050.2|Name=NO21G00050.2|organism=Nannochloropsis oceanica|type=mRNA|length=1094bp
AAAACCATAGACAGACAGGAGAGGGCAATGTCATTCCCGCCTTCCATCCT
AACTCCTTACAAGGCAGGCCTCTTCAGTGGCAAGGGTGTGATCGTCACAG
GTGGAGGCACTGGCCTGGGGTACGCAATAGCCCGGGAACTTGTATCTCTA
GGCGCCCAAGTCGTAATAGCTGCCCGCCGGTTGGACATCCTGGAGCAAGC
CGCTGCTGAACTTAATAAGGAAAGCGGCAAGACAGGGGGAAAAGTCCATG
TCTGCCGGTGCAATGTTCGGAGCGAGGAGGACATTCAAGAGCTTGTGACC
TTCGCTTTGGAGAAAATGGGGAGGATCGACGGCCTGGTCAACAACGCGGG
CGGGCAATTCGTGAGCCCCGTAGAGAATATCAGTGCCCGTGGCTTCAAGG
CTGTGGTTGAGACAAACTTGCTCTCATGTTTCATGCTTTCCAAGGAGGTC
TATAATCGGTGGTGGAGTCAACAGGAAGGCAGCAGCGGTAGTGGCTCCAT
CGTGAACATCATCCTCGCCAACAAGAATGGGTTTCCCATGATGGCACACA
GCGGCGCCGCACGGGCTGGCGTAGAGAACCTGACCAAGAGCATGGCCTTG
GAGTGGGTGGGTAAAGGTGTTCGCGTCAACTGCGTGGCTCCCGGCATCGT
CTACACAGAAAGTGGCTTTGCCAACTATGGGTATGTGTATATTTTTGTCC
TCCATGCCTCCATCCCCGTCTGATGAAACTTTCTTTCTTTTCCCCTTGCT
CAACATACACTTATGCATTGCTCTTTCTGAAACCGATCATCTCTCAAGCG
AAATGGCCACCGCCTTTCTCGCTACCGTCCTTCCTGCGATTCCAGCCCAT
CGGTGCGGCACCGCGGAGGAAGTGAGCAGCCTCGTCCTTTTCCTCCTCTC
GGACGCGGCCGTATACGTTACCGGCCAAAATATAGGGGTGGATGGAGGGA
TGGGCCAGAGCACGATCCCTCTGCGACCACAAGACCACGAAGCGGCTCTA
TTGCCTATATACGGAGAGTTGCCATCGAAGGCAAAGCTGTAGGGAACAGG
AGAGGAGAGGACATCCACAAAAAGAATTAAAGCAAATTCGTGAT
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protein sequence of NO21G00050.2

>NO21G00050.2-protein ID=NO21G00050.2-protein|Name=NO21G00050.2|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MSFPPSILTPYKAGLFSGKGVIVTGGGTGLGYAIARELVSLGAQVVIAAR
RLDILEQAAAELNKESGKTGGKVHVCRCNVRSEEDIQELVTFALEKMGRI
DGLVNNAGGQFVSPVENISARGFKAVVETNLLSCFMLSKEVYNRWWSQQE
GSSGSGSIVNIILANKNGFPMMAHSGAARAGVENLTKSMALEWVGKGVRV
NCVAPGIVYTESGFANYGYVYIFVLHASIPV*
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mRNA from alignment at chr21:14399..16405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00050.2 ID=NO21G00050.2|Name=NO21G00050.2|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at chr21:14399..16405- (Nannochloropsis oceanica)
AAAACCATAGACAGACAGGAGAGGGCAATGTCATTCCCGCCTTCCATCCT
AACTCCTTACAAGGCAGGCCTCTTCAGTGGCAAGGGTGTGATCGTCACAG
GTGGAGGCACTGGCCTGGGGTACGCAATAGGTAAGTCAGGATCATGCATC
CCATTCAGCTACGATGGGCAAAACAGTGACGTGCGGCGACGAGAAAGGTG
GAGACAAAGCGTGTAGCCTTTGTACTACTACTACTGCTACTGTTGCGGCT
ACTACTACTACAGTCCAGATAGACAGAATGGAGGGCCGCGAGAGCGAGGA
ACGATCTAGGGCTACTGCTTGCGCTGGCAACTTCAAAGGACAAACAGGCA
AAGGTCCAGGAGAAGAACAGATTTGGTCTGCTGCTGCGGCTGGTAGAGAT
GGTGTTGCTACTACTGCTGCTGCTGATGCAATTGCGGTTGTAATTACGCC
CTCCCGGCTTCTGATGGTCGACAGACAGGAGTAAAAATGAAGGAGGGAGA
AGGAAGAATTTTCGCCATGACGATGACGGGGACGACTACTACGTAATAAT
TTATTGCGTGGCATTTCCCTACTTCTTTTCCGGCTCTGGGTGTCGGTTTT
CTTTGTCACTGTCTAACATCCCATCACATCTCTATTTTCCCTACCATATC
CTCCTATTTCCCCCACACTCTCTCCAGCCCGGGAACTTGTATCTCTAGGC
GCCCAAGTCGTAATAGCTGCCCGCCGGTTGGACATCCTGGAGCAAGCCGC
TGCTGAACTTAATAAGGAAAGCGGCAAGACAGGGGGAAAAGTCCATGTCT
GCCGGTGCAATGTTCGGAGCGAGGAGGACATTCAAGAGCTTGTGACCTTC
GCTTTGGAGAAAATGGGGAGGATCGACGGCCTGGTCAACAACGCGGGCGG
GCAATTCGTGAGCCCCGTAGAGAATATCAGTGCCCGTGGCTTCAAGGCTG
TGGTTGAGACAAACTTGCTCTCATGTTTCATGCTTTCCAAGGAGGTCTAT
AATCGGTGGTACGGGTGGAGGAAGGGTGGGGAGGCGGGGTGCTAATGGGA
GAAAGGAGGACAATGGGAGGGGAGATGTGTGTAAAACTGCTAAAGCTTGA
GAAGATAAAATATACTGCTGTCTATCTGCCTCCCTCCTTGACTGTCTTTC
TCTCTAAACCCCCTCCCTATCTCCGCCAGTCAATTTATTCAACATCACTC
ATGTTATCTCTCTTCCTCACAGGTGGAGTCAACAGGAAGGCAGCAGCGGT
AGTGGCTCCATCGTGAACATCATCCTCGCCAACAAGAATGGGTTTCCCAT
GATGGCACACAGGTGGGTCCTTTACGTCTCTTTCGCGCATTCTTTTTGGT
CCATTCATTCTTTTCTCATTTTCCTCGGCGTCTCTCAAGAGTTGAGGCCA
GAAAAGCATTTGTGGGCAAAAACAATCCTCTTCTTAGTTCTTCCCCCCCC
CTCCTTCAATTCAGCGGCGCCGCACGGGCTGGCGTAGAGAACCTGACCAA
GAGCATGGCCTTGGAGTGGGTGGGTAAAGGTGTTCGCGTCAACTGCGTGG
CTCCCGGCATCGTCTACACAGAAAGTGGCTTTGCCAACTATGGGTATGTG
TATATTTTTGTCCTCCATGCCTCCATCCCCGTCTGATGAAACTTTCTTTC
TTTTCCCCTTGCTCAACATACACTTATGCATTGCTCTTTCTGAAACCGAT
CATCTCTCAAGCGAAATGGCCACCGCCTTTCTCGCTACCGTCCTTCCTGC
GATTCCAGCCCATCGGTGCGGCACCGCGGAGGAAGTGAGCAGCCTCGTCC
TTTTCCTCCTCTCGGACGCGGCCGTATACGTTACCGGCCAAAATATAGGG
GTGGATGGAGGGATGGGCCAGAGCACGATCCCTCTGCGACCACAAGACCA
CGAAGCGGCTCTATTGCCTATATACGGAGAGTTGCCATCGAAGGCAAAGC
TGTAGGGAACAGGAGAGGAGAGGACATCCACAAAAAGAATTAAAGCAAAT
TCGTGAT
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Coding sequence (CDS) from alignment at chr21:14399..16405-

>NO21G00050.2 ID=NO21G00050.2|Name=NO21G00050.2|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr21:14399..16405- (Nannochloropsis oceanica)
ATGTCATTCCCGCCTTCCATCCTAACTCCTTACAAGGCAGGCCTCTTCAG
TGGCAAGGGTGTGATCGTCACAGGTGGAGGCACTGGCCTGGGGTACGCAA
TAGCCCGGGAACTTGTATCTCTAGGCGCCCAAGTCGTAATAGCTGCCCGC
CGGTTGGACATCCTGGAGCAAGCCGCTGCTGAACTTAATAAGGAAAGCGG
CAAGACAGGGGGAAAAGTCCATGTCTGCCGGTGCAATGTTCGGAGCGAGG
AGGACATTCAAGAGCTTGTGACCTTCGCTTTGGAGAAAATGGGGAGGATC
GACGGCCTGGTCAACAACGCGGGCGGGCAATTCGTGAGCCCCGTAGAGAA
TATCAGTGCCCGTGGCTTCAAGGCTGTGGTTGAGACAAACTTGCTCTCAT
GTTTCATGCTTTCCAAGGAGGTCTATAATCGGTGGTGGAGTCAACAGGAA
GGCAGCAGCGGTAGTGGCTCCATCGTGAACATCATCCTCGCCAACAAGAA
TGGGTTTCCCATGATGGCACACAGCGGCGCCGCACGGGCTGGCGTAGAGA
ACCTGACCAAGAGCATGGCCTTGGAGTGGGTGGGTAAAGGTGTTCGCGTC
AACTGCGTGGCTCCCGGCATCGTCTACACAGAAAGTGGCTTTGCCAACTA
TGGGTATGTGTATATTTTTGTCCTCCATGCCTCCATCCCCGTCTGA
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Synonyms
Publications