Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:3046..8228 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00020.1 vs.
Match: EWM20665.1 (mitochondrial phosphate carrier protein [Nannochloropsis gaditana])
HSP 1 Score: 657.1 bits (1694), Expect = 4.700e-185
Identity = 376/555 (67.75%), Postives = 425/555 (76.58%), Query Frame = 0
Query: 1 MRPPLFLVCLSYVALLGSQASWAWIAFFPGGQRGASAATSPSSSSPGLHRQSWGDVSASSSSRRRRCPSCGTRACA---SSSSSSSPFLPPSLSHALPSARGGGAFSARRRGRQTAAVTAAAAGEQPPSSSSSSPLHINTTGQAQSYSNDSSSGGRRNGPLLHSSSISSSLTKLSRGGKDTGNLSSFPPSPSSSSSGRRHLSNTKPSSTLFILAFGLFLTAAAAVIPSSLLVSPGLSSLSSSTSSSLLSFFLAKLRPPPGIEPTGRDLYWRIFLSGGVCASISHGWAVPLDVVKTRLQTDPERYQGLGIWGACEKIRREEGPGMLLKGLGATLTGYSIQGSLKYGLYAMLKTVMKRALPLSSVSVTWVLASMMADVIASTALCPLEATRIRLVADPGFAHGTLDGLANLIGKEGVSSIFKGMPAILAKQLPYTIVQLCGFELITRLFYSWEVTAALVHSPGPWQWAVSFGSAVITGIFASLASQPGDVILSRVNRDRSHKPVLETMKDAVRELGIKGLFKGTRARLLHVGMIVTIQLVIYDFVKQLVGLPATGAH 553
MRP FLVCLSYVALLGSQASWAWIAF P GQRGASAA+ PSS + W VS+ RRCPSCG AC+ SSSSSS LPP+L PSARGGGAFS+RRRGRQ PP SS S L S ++ SS G + L S+ ++ ++G + + SS P PS RR K SST+ IL L LT AA+IPS+LL ++S+SLL+ LA+LRPPPGIEP+G DLYWRIFL+GGVCASISHGWAVPLDVVKTRLQTDP RYQGLGIWGACEKIRREEGPGMLLKGLGATLTGYSIQGSLKYGLYA+ K+V+ R LP SS+ VTWVLASM+AD IASTALCPLEATRIRLVADP FA GTLDG+ +L+ +EG SSIFKGMPAILAKQLPYTIVQLCGFELITR+FYSWEVTA LVH+PGPWQW VSFGSA+ITG+FAS+ASQPGDVILSRVN+ +SHK V+ETM++AV+ELG++GL+KGTRARLLHVGMIVTIQLVIYDFVKQLVGLPATGAH
Sbjct: 1 MRPSPFLVCLSYVALLGSQASWAWIAFLPVGQRGASAASCPSSP-----QTLWAGVSSQGP---RRCPSCGALACSTPSSSSSSSLALLPPTL----PSARGGGAFSSRRRGRQ------------PPPVSSPSELRA-------SGADGSSDPGTESDALPPPPSVPANARPDAKGQVSSASTSS--PFPSQ----RRPPGKQKLSSTIPILGIALLLTGLAALIPSALL-------FPDASSASLLASLLARLRPPPGIEPSGGDLYWRIFLAGGVCASISHGWAVPLDVVKTRLQTDPARYQGLGIWGACEKIRREEGPGMLLKGLGATLTGYSIQGSLKYGLYAIFKSVVTRLLPSSSIFVTWVLASMIADCIASTALCPLEATRIRLVADPSFASGTLDGIGHLLREEGCSSIFKGMPAILAKQLPYTIVQLCGFELITRVFYSWEVTARLVHAPGPWQWLVSFGSALITGVFASIASQPGDVILSRVNKTKSHKAVVETMREAVQELGLRGLYKGTRARLLHVGMIVTIQLVIYDFVKQLVGLPATGAH 511
The following BLAST results are available for this feature:
BLAST of NO21G00020.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 Expect = 4.70e-185 / Id = 67.75 Sequence EWM20665.1
Match Name E-value Identity Description
EWM20665.1 4.700e-185 67.75 mitochondrial phosphate carrier protein [Nannochlo... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G00020.1 ID=NO21G00020.1|Name=NO21G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2961bp back to top protein sequence of NO21G00020.1
>NO21G00020.1-protein ID=NO21G00020.1-protein|Name=NO21G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp back to top mRNA from alignment at chr21:3046..8228+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00020.1 ID=NO21G00020.1|Name=NO21G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=5183bp|location=Sequence derived from alignment at chr21:3046..8228+ (Nannochloropsis oceanica)A
TGCGCCCTCCCCTCTTCCTTGTCTGCCTCTCCTATGTCGCTTTGCTCGGT
TCCCAAGCCTCCTGGGCATGGATTGCTTTCTTCCCTGGAGGTCAACGCGG
GGCGTCGGCGGCCACCAGCCCAAGCAGCAGCAGCCCTGGCTTGCATCGTC
AGTCTTGGGGGGATGTCAG GTAGGCGGAGAGGGGTAGATGGAGAGAAGGG
AGCCCGAAAGGGGAGAGGGAGGAGCACGAAGGAAGGTGCAGACTGAGGTT
TCGACGGCTGCAAGCCTTCACTCGCTCATTTTCACTCTCGCCCTTTTTCT
TGGTGTCCTCCACTTACTACACGCACAGCGCAAGCAGTAGCAGCAGAAGA
AGAAGATGCCCTTCCTGCGGCACCCGTGCCTGCGCCTCGTCCTCGTCCTC
GTCCTCCCCCTTCCTTCCACCCTCCCTCTCCCACGCCCTCCCCTCGGCCC
GGGGCGGCGGCGCTTTTTCCGCACGGCGCCGCGGGCGACAAACTGCCGCA
GTCACTGCCGCGGCTGCAGGAGAGCAGCCCCCTTCCTCCTCCTCCTCCTC
CCCCCTCCACATCAATACTACAGGCCAAGCACAGAGCTACAGCAACGACA
GCAGCAGTGGCGGCCGTAGGAACGGCCCCCTCCTTCACTCCTCCTCGATC
TCCTCCTCCCTCACCAAACTCTCAAGAGGCGGGAAAGATACGGGCAACCT
GTCCTCCTTTCCCCCCTCCCCCTCCTCCTCTTCCTCGGGGCGACGTCATC
TAAGCAATACAAAACCGAGCAGCACGCTCTTCATCCTCGCCTTCGGCCTC
TTCCTCACCGCTGCCGCCGCCGTTATCCCGTCCTCCTTACTCGTCTCCCC
CGGCCTCTCCTCCCTCTCTTCCTCAACCTCCTCCTCCCTCCTCTCCTTCT
TCCTGGCCAAGCTGCGACCGCCCCCCGGGATCGAGCCGACCGGGAGAGAC
CTTTACTGGAGGATATTCCTCTCGGGCGGCGTGTGTGCCAGCATCTCGCA
CGGGTGGGCCGTGCCTCTAG GCAAGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAAGGGTGGTTTTGGGGCCCGACGAAACCCTCGCCAGGGGCATGGGT
GAAGCCGAGAGGGAATCAAGAATGTCTCATGATTGCGTGCTATCTTTACG
ATGTCGATGTATCAATGTGGCCGTGTCAGAGTGTGAGGGAGCTCACTCCT
CCTTCTTAATTCCTGCCTCCCGCCCTCCTCCCCCAGACGTGGTCAAGACG
CGGCTGCAGACGGACCCCGAGCGCTACCAAGGCCTGGGCATCTGGGGGGC
GTGTGAAAAGATAAG GTGAGAGAGAGGGGGAGGGAGAGAGGGGAGGAGGG
AGAGAGGGGAGGAGAGAGAGAGGGAGGGGGAGAGAGAGGGAGGGGGAGAG
AGAGGGAGGGGGAGAGAGGGAGGGAGGAGGGTCAAAGTGCGGTCGCACTC
GGGGAACGGGGGAGGGAGAAGGTGAGGTGAGGGAGGTCGGGATGGAGAGG
GGGGGAATGGCGAGTGGAGGCAATGCGCATTGCTTTTATATCCTAACGGG
ATCTCTTCTCCTCCTTTGCTTTCCTCCTTCTCTTCCTCCCTCCCCTGTAG
ACGGGAAGAAGGGCCGGGCATGCTCCTCAAGGGCCTCGGCGCCACGTTAA
CAG GTAGGTGTAAGGGCAGCTGTCTTTCCCCCTCATTACCCCCTCCTTCG
TTCGGTCCCTCCGTTCCTTCCTCTCTCTTTTCTTCAAGCTTCAGGTCGTC
CCGGTCTCAGCTTCGTCGTCCCCCCCCTCCCCCCCTCCCTTCTTCCCCCC
CCTCAAGGCTACTCGATCCAAGGCTCCCTCAAGTACGGCCTCTACGCCAT
GCTCAAGACCGTGATGAAGCGGGCCCTACCGCTCTCATCCGTATCAGTCA
CTTGGGTATTGGCCAGCATGATGGCCGACGTCATCGCCAGCACCGCCCTC
TGTCCTCTCGAG GTACGTGCCTTTCTCCCTCCTTCCCGCCCGCCCTCCCC
TCCTCCCTCCCTCCCTGCGCATTTCTGCCTCCTCCCTCAGTCCTCGCACA
AGCCAGTCTCGGCGAGAGCGCGGCTTTATGCCGTTAGTGATAGCCAACAT
TGACTCCCAGCACCCATGCCATTGCTGACTGCAAGCATGCGTGCATGTCC
TCCAGCGGAACGTGCTTGCTGTCCTCACTCCCTTTCCGTGCGCCCGGCTG
CTCCCCCAAAGCGTGTCTTGTCCCTCTCTCCCCTCACGCTCACTTCTTTC
TGCCTGCCCTCTTCCATTTCACCACTCCTTGCCCTCTCCCTCCACGCACT
TATTGTCCTCCCTCCCTCCCTCCTCCTCCCGCTCCTTCCACGCAGGCCAC
TCGCATCCGCCTAGTGGCCGATCCGGGTTTCGCCCACGGGACCTTGGACG
GCCTAGCGAACCTCATCGGGAAGGAGGGCGTGTCGAGCATCTTCAAGGGC
ATGCCGGCCATCCTGGCCAAGCAGCTCCCTTACACCATTG GTGGGTAGGT
GGGCGGGTGCCTGCAGCCCTCCTGCCCTCCCTCTCTCCTTCCTCCCTTCC
CTGTTCTTGGCACCTCCCACATTCCCTCCCTGCGGACCAACTCCACACCC
AACTTACCCCGCCCTCCCTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCC
TCTTCTCAGTGCAACTGTGCGGCTTCGAGCTCATCACGCGTCTGTTCTAC
TCCTGGGAGGTGACGGCGGCCCTCGTGCACTCCCCGGGGCCCTGGCAGTG
GGCAGTGTCGTTCGGCAGCGCGGTTATCACG GTGAGCACACGGCATGAGC
TCTCACACACACAGACACACGCACACAAGCAGCACCGAGGATGACGGATC
TCTCCCTCAAAAGCACACTCACACACGAGCCCCCAAACTCAATCTTCTCA
CCTTTGCCGCCCTTTCTGCTGCTCCTTCCATGCCCTCCCTCCCTCCCTCC
CTCCCTCGACCAGGGAATCTTCGCCTCCCTTGCCTCCCAGCCGGGGGACG
TGATCCTTTCGCGGGTCAACAGGGACAGGAGCCACAAG GTGGGTAGTTCA
AGAGAGGGGGGAGGGGGGGAAGGAGGGTGGGAGGGAGGGAGGGAGGCAAG
GAGGGAGGGAGGGTGAGATGGAAAGGTGAAGCAGTTTATTTAAAACACCC
TCCACTCCCACTGCACTCACACCGACCCTCCCTCGCTTCCTTCCATCCTC
CCTGCCTCCCTCCCTCCCTTTGCGAAGCCGGTGCTGGAGACGATGAAGGA
CGCAGTGCGGGAGTTGGGCATCAAGGGACTCTTCAAAGGCACG GTAAGCA
GTCAGGAATACGTCGTGTATTGATGCGTGGGACAGAGAAAAGGGAGGAGA
AGGGAGGGATAGGAGGGATAAGAGTGAACAAGAGCCGCGGGACTCGCTTT
CCCCTGGGAATCGACTCAGTCGGTCGGTCGATCCGGCGCCCTGGCCCATT
TTGCCGCTTGTCTCTCTGGGAAAGGAAGGTACAGCCCGAACGACCTCCAT
CAGCACCTCACACCCCGTTCTCCTCCTCCCTCTCTGCCCTCCCACCTCCT
CCTCTCCCTTAGCGCGCGCGTCTGCTGCACGTGGGCATGATCGTGACCAT
CCAGCTCGTCATCTACGACTTTGTCAAGCAACTGGTCGGCTTGCCCGCCA
CGGGGGCTCACTAA back to top Coding sequence (CDS) from alignment at chr21:3046..8228+
>NO21G00020.1 ID=NO21G00020.1|Name=NO21G00020.1|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at chr21:3046..8228+ (Nannochloropsis oceanica) back to top