|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr20 | genome | chr20:804625..808269 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G02550.1 vs.
Match: EWM28507.1 (hypothetical protein Naga_100058g18 [Nannochloropsis gaditana]) HSP 1 Score: 279.3 bits (713), Expect = 1.800e-71 Identity = 145/310 (46.77%), Postives = 205/310 (66.13%), Query Frame = 0
Query: 69 PIFILGHYRSGTSLLHEMLHKDERLLAPTAFQCYVPRIFLGREKFMEGKFSALKMERPMDSMKVGLASPFEDEFAVANLSGVSPYMGAIFPRQYHY---YERYLALKDVTQEELSAWKKSITFFFKKILFRRQDKRLILKSPSHTARVRLLRDLFPGAKFIHISRDPYEIYQSTHKLHTNLLIQWCLQ--------RPPLENKDWKKGNIISHFRRMYDAYFEDVKL--LGKDELVDIKYTDLLSDPVATIKTIYDRFNLGRFEEKMLPFLREYQQEQEGFVVNTHLALSEEERAMVAHAWSDYFEFYGY 366
P+FILGH+RSGT+ LHE++ KD+R +APT +QC+ PR+FL RE+ + +F L+M RPMDS+KV + SP EDEF + NL G+SPYMGAIF R Y +YL+ K+ + EE++ WK ++ FF+KK+LF++QDKRLILKSP+HTAR++LL +LFP AKFIHISR+P+E+YQST KL +LLIQW LQ + E+ + + +I+ + +YD++F+D+ LGKD L +KY DL+ PV ++ IY LG FE L ++ E F N H +S + V + YF +GY
Sbjct: 221 PLFILGHFRSGTTRLHELMSKDDRFVAPTVYQCFAPRVFLHREEAISEQFGKLQMRRPMDSVKVRMESPQEDEFGLVNLCGLSPYMGAIFARAERIKNTYFQYLSFKEASTEEVARWKDAVVFFYKKVLFKKQDKRLILKSPAHTARLKLLHELFPDAKFIHISRNPFEVYQSTSKLFMDLLIQWNLQYVDYLGDIQSHPEDTELHR-SILQLYGGIYDSFFQDLDELGLGKDVLTYVKYEDLMRSPVGVVEKIYKDLRLGNFENVQQLLLEATAKDGE-FRRNAHPNISANVKNDVRTRLARYFTEFGY 528
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G02550.1 ID=NO20G02550.1|Name=NO20G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
CACAGCATCCTCCTCTTTCTCCCTCTCCCCTCCTGAAACGCAGCACCGCT
CTCGTTGTAGCTCACACAGGCCATACGTCGTAGCCACCTCCTCCCTCCCC
GCCTCTCCTCGCTCCTCTCAATAATCCAGCCTGCCTCGACACGAGCCACA
CACACCACCGCCACCGGACAACAAACACATACACACCATCCAGAATTATG
CCCTCCCTGTTTGTCACCCTCGTCGTTGTCCTCGTTGTCCTTCCCGCCTT
TCTCCTCCTCCTCTTGGTTAAGCTGCCCAAGCCCATGCCGTATCGATGGG
ATGTCCGCTACTTTCTTCTCATGGGCATGCCGGCCGATCAGTTCTTGTCC
TTGATCCTCAAGAACGGAATAGATCCAGTTTTCTACCATCGAGCGCTATA
TGCCACATACATCTCGCTCATGGGCACCTTCTTTTGGATCCCCAAGGAGG
AGGAGAAGTATCCCGTGGAGGTGATCGAAAGGGTGCCCATTGCCTATCCC
CCATCTTCATCCTCGGCCACTACCGCAGTGGGACGTCTCTACTGCACGAG
ATGTTGCACAAGGACGAGCGCCTCCTGGCACCCACGGCTTTCCAGTGCTA
CGTGCCGCGGATCTTCCTGGGCAGGGAGAAATTCATGGAAGGCAAGTTCT
CGGCCCTGAAGATGGAACGTCCCATGGACAGTATGAAGGTCGGCCTGGCC
AGCCCCTTCGAGGACGAATTTGCCGTTGCCAATCTCTCGGGTGTCTCTCC
CTATATGGGCGCCATATTCCCCCGGCAATATCACTACTACGAGCGCTACC
TCGCCCTGAAGGACGTCACGCAGGAAGAGCTGTCAGCGTGGAAGAAGTCT
ATCACATTCTTCTTCAAAAAAATTCTCTTCAGACGCCAAGACAAGCGGCT
TATCCTCAAGTCCCCCTCCCACACGGCCCGCGTTCGCCTCCTCCGCGACC
TCTTTCCCGGCGCCAAATTCATCCACATCAGCCGGGACCCATACGAGATC
TATCAGTCCACGCACAAACTACACACTAACCTCCTCATCCAGTGGTGCCT
CCAGCGACCACCCCTGGAGAACAAGGACTGGAAGAAGGGGAACATCATTT
CCCACTTTCGACGGATGTATGATGCCTACTTTGAGGACGTGAAGCTCCTG
GGCAAGGACGAGCTTGTTGATATAAAGTACACAGATTTGCTCTCCGATCC
GGTGGCCACCATCAAGACCATCTACGACCGATTCAATCTCGGGCGCTTCG
AAGAGAAGATGCTGCCTTTTTTGCGCGAATACCAGCAGGAGCAGGAGGGC
TTTGTGGTCAACACGCACCTGGCTCTGAGCGAGGAGGAGAGGGCGATGGT
GGCCCATGCCTGGAGCGACTACTTCGAGTTTTATGGCTATCGGAAGTAAG
GGGA back to topprotein sequence of NO20G02550.1 >NO20G02550.1-protein ID=NO20G02550.1-protein|Name=NO20G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MGCPLLSSHGHAGRSVLVLDPQERNRSSFLPSSAICHIHLAHGHLLLDPQ
GGGEVSRGGDRKGAHCLSPIFILGHYRSGTSLLHEMLHKDERLLAPTAFQ
CYVPRIFLGREKFMEGKFSALKMERPMDSMKVGLASPFEDEFAVANLSGV
SPYMGAIFPRQYHYYERYLALKDVTQEELSAWKKSITFFFKKILFRRQDK
RLILKSPSHTARVRLLRDLFPGAKFIHISRDPYEIYQSTHKLHTNLLIQW
CLQRPPLENKDWKKGNIISHFRRMYDAYFEDVKLLGKDELVDIKYTDLLS
DPVATIKTIYDRFNLGRFEEKMLPFLREYQQEQEGFVVNTHLALSEEERA
MVAHAWSDYFEFYGYRK* back to topmRNA from alignment at chr20:804625..808269- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G02550.1 ID=NO20G02550.1|Name=NO20G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=3645bp|location=Sequence derived from alignment at chr20:804625..808269- (Nannochloropsis oceanica)
CACAGCATCCTCCTCTTTCTCCCTCTCCCCTCCTGAAACGCAGCACCGCT
CTCGTTGTAGCTCACACAGGCCATACGTCGTAGCCACCTCCTCCCTCCCC
GCCTCTCCTCGCTCCTCTCAATAATCCAGCCTGCCTCGACACGAGCCACA
CACACCACCGCCACCGGACAACAAACACATACACACCATCCAGAATTATG
CCCTCCCTGTTTGTCACCCTCGTCGTTGTCCTCGTTGTCCTTCCCGCCTT
TCTCCTCCTCCTCTTGGTTAAGCTGCCCAAGCCCATGCCGTATCGATGGG
ATGTCCGCTACTTTCTTCTCATGGGCATGCCGGCCGATCAGTTCTTGTCC
TTGATCCTCAAGGTAAGGCAGCACAGGGGAGAAGGGATGAGACCAGACCG
ATTTCGCAAAGAGAGGTGCGAGGGTAATGTGCCGGCAATTGACCCTAGTC
GTCTGCTCCATCCCCCTCGTGGGCATGCTCGACGGCCAGTATTCGTGCTT
GTTCATCCTTAAGGAGCGTGCATATAAACGAGGCGTTGAATAAGCAATGG
GCAAGACCGGGCTCTTGGACTGCCTGCGAGCGATTGGTTTCACATGTCGT
ACTCTCACCGTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCGTAGAACGGAATAGATCCAGTTTTCTACCAT
CGAGCGCTATATGCCACATACATCTCGCTCATGGGCACCTTCTTTTGGAT
CCCCAAGGAGGAGGAGAAGTATCCCGTGGAGGTGATCGAAAGGGTAGGGT
CGGAGGGAAGGAGGGAGGGAGGAAGGGGGGGAGAAAGCGGCGGTTCGTGT
CATACTGCCCTGACGGTGTCTTTTTGATGATGCCAGCACACGGCATGTAC
GCTTGGCGTGGCTGGTTGCGACTTTTCTTTGAGAGAAACTCTTTTACCTA
CGCTGTCCATCGCTCCATCGATCTGATTTCATATTCACAGCCTCTCCCTC
CCTCCCTTCGTCCTCCCTCCCTTCCGTCCTCCCTCCCTCAGGTGCCCATT
GCCTATCCCCCATCTTCATCCTCGGCCACTACCGCAGTGGGACGTCTCTA
CTGCACGAGATGTTGCACAAGGACGAGCGCCTCCTGGCACCCACGGCTTT
CCAGTGCTACGTGCCGCGGATCTTCCTGGGCAGGGAGGTGAGGGAGGAAG
GGAGGAAGGGAGGAAGGGAGGAAGGGAGGAAGGGAGGGAAGGAGGGAGGA
GGACTAATGTATAACCTTCTTGGTTTCTTATTATTCCGTATCCCGTTTTC
TCTGAATTGAGATGGTTTCTCTGAAAGGCACCTCCCACTCATACCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCAGAAATTCATGG
AAGGCAAGTTCTCGGCCCTGAAGATGGAACGTCCCATGGACAGTATGAAG
GTAGGTAGGCAGGGCGGGAGGTAGGAACGGAGGGAGCGACGGGGCGATCC
AATAAGCTGAGTGCTTGAGTTTTTGTGCGGGATCCATCCTCCCCTCCCTC
CTCTCCTCCCTCCTTCCCCCCCCCCTCCTTTACCTGACTCCACACTCCCT
CTGGAAGTGGGCTTGCCACCACCTCTCTCACCCTCCCTCCCTCCCTCCCT
CCCCCCTCCCCCCCACTCCAGGTCGGCCTGGCCAGCCCCTTCGAGGACGA
ATTTGCCGTTGCCAATCTCTCGGGTGTCTCTCCCTATATGGGCGCCATAT
TCCCCCGGCAATATCACTACTACGAGCGCTACCTCGCCCTGAAGGACGTC
ACGCAGGTAGGTCCTGTTTTGTCCTCCCCTCCCACCTCCCCCACCCTCCC
TCCTTCCCTCCCTCCCTCCCTCGTCCTCCTTCCAAGGTCGAGGGGGAGAG
TCTCCTTCTCCTCTCTCTTATTCGCCCTCCCTCCCTCCCTCCCTCCCTTC
CTCCCTCCCTTGCAGGAAGAGCTGTCAGCGTGGAAGAAGTCTATCACATT
CTTCTTCAAAAAAATTCTCTTCAGACGCCAAGACAAGCGGCTTATCCTCA
AGGTATCTCCCTCCCTCCCTCCTTTCCTCTCTCCCTCCCTCCCTTTCTCC
CTCCCGGCCTGCCTCCTTACCTATCTTCGCAGCCCTCGATGGGATCGGTG
GAATACATCATTACACTATACCTATACATAAGTGAATATGGATGTAGGTA
TAACCTACCTATCTACATCTATAATGGATGTAATCAGATTCCCAACCTCC
GCCAGTGCCCACGACCTACGCATCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGTCCCCCTCCCACACGGCCC
GCGTTCGCCTCCTCCGCGACCTCTTTCCCGGCGCCAAATTCATCCACATC
AGGTACACCAGATCACTCCCTGCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTTCCAATTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCTCCCTCCCTCCTCCCCTCCCTTCTCTCCCTTGCTCTCTGTCTTCCAT
TCTCTCTGCTTGTCTGACGAAGGCCGTTTGCTGCATTTCTCAAACGCCTC
CCCTCCTCAACCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCG
CTCTTCCTAGCCGGGACCCATACGAGATCTATCAGTCCACGCACAAACTA
CACACTAACCTCCTCATCCAGTGGTGCCTCCAGCGACCACCCCTGGAGGT
ACGTCCTCCCTCCCTCCCTCCCTCCCTTCCTCCTTCCCTCGTGGACCGTG
TCGACACACGCCTTGGCAAATCGTCTAACCTCCTTTCTTCCCTTCCTTCC
TCCCTCCCTGCCCCCCTCTTTAGAACAAGGACTGGAAGAAGGGGAACATC
ATTTCCCACTTTCGACGGATGTATGATGCCTACTTTGAGGTGGGGCCCTC
CCTCCCTTCCTCCTTCCCTCCCTCCCTCGCTCCCTCCCTCGCTCCCTCCT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTGTTACTCCCTTCTAATTC
CACTTCCTTCCTTTTTAATGTGCCCGACGCGCTCACCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCAGGACGTGAAGCTCCTGGGCAAGGACG
AGCTTGTTGATATAAAGTACACAGATTTGCTCTCCGATCCGGTGGCCACC
ATCAAGACCATCTACGACCGATTCAATCTCGGGCGGTACGCACCTTCCCT
CCCTCCCTCCCTCCCTCCCTCGTTATTCCCCTTCTTGGACGATATCTCCC
TACTCCCTCTTTTTCGCCATTTGCTTTCCTCTGTCCCTCCCTCCCTCTCT
CTCTCTTCCTCTCCATCTCATTATCCTCTTAACATGTCCTAACCGAGTCC
GTGGTCATCATGAATGGTTGCCTCATTCCCCTGATCTCCTCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCCTCCCCCCCCCGGCAGCTTCGAAGAGAAGA
TGCTGCCTTTTTTGCGCGAATACCAGCAGGAGCAGGAGGGCTTTGTGGTC
AACACGCACCTGGCTCTGAGCGAGGAGGAGAGGGCGATGGTGGCCCATGC
CTGGAGCGACTACTTCGAGTTTTATGGCTATCGGAAGTAAGGGGA back to topCoding sequence (CDS) from alignment at chr20:804625..808269- >NO20G02550.1 ID=NO20G02550.1|Name=NO20G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr20:804625..808269- (Nannochloropsis oceanica)
ATGGGATGTCCGCTACTTTCTTCTCATGGGCATGCCGGCCGATCAGTTCT
TGTCCTTGATCCTCAAGAACGGAATAGATCCAGTTTTCTACCATCGAGCG
CTATATGCCACATACATCTCGCTCATGGGCACCTTCTTTTGGATCCCCAA
GGAGGAGGAGAAGTATCCCGTGGAGGTGATCGAAAGGGTGCCCATTGCCT
ATCCCCCATCTTCATCCTCGGCCACTACCGCAGTGGGACGTCTCTACTGC
ACGAGATGTTGCACAAGGACGAGCGCCTCCTGGCACCCACGGCTTTCCAG
TGCTACGTGCCGCGGATCTTCCTGGGCAGGGAGAAATTCATGGAAGGCAA
GTTCTCGGCCCTGAAGATGGAACGTCCCATGGACAGTATGAAGGTCGGCC
TGGCCAGCCCCTTCGAGGACGAATTTGCCGTTGCCAATCTCTCGGGTGTC
TCTCCCTATATGGGCGCCATATTCCCCCGGCAATATCACTACTACGAGCG
CTACCTCGCCCTGAAGGACGTCACGCAGGAAGAGCTGTCAGCGTGGAAGA
AGTCTATCACATTCTTCTTCAAAAAAATTCTCTTCAGACGCCAAGACAAG
CGGCTTATCCTCAAGTCCCCCTCCCACACGGCCCGCGTTCGCCTCCTCCG
CGACCTCTTTCCCGGCGCCAAATTCATCCACATCAGCCGGGACCCATACG
AGATCTATCAGTCCACGCACAAACTACACACTAACCTCCTCATCCAGTGG
TGCCTCCAGCGACCACCCCTGGAGAACAAGGACTGGAAGAAGGGGAACAT
CATTTCCCACTTTCGACGGATGTATGATGCCTACTTTGAGGACGTGAAGC
TCCTGGGCAAGGACGAGCTTGTTGATATAAAGTACACAGATTTGCTCTCC
GATCCGGTGGCCACCATCAAGACCATCTACGACCGATTCAATCTCGGGCG
CTTCGAAGAGAAGATGCTGCCTTTTTTGCGCGAATACCAGCAGGAGCAGG
AGGGCTTTGTGGTCAACACGCACCTGGCTCTGAGCGAGGAGGAGAGGGCG
ATGGTGGCCCATGCCTGGAGCGACTACTTCGAGTTTTATGGCTATCGGAA
GTAA back to top
|