NO20G01200.1, NO20G01200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01200.1
Unique NameNO20G01200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1320
Alignment locationchr20:366806..368125 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:366806..368125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G01200.1 vs.
Match: EWM22126.1 (beta-lactamase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 528.5 bits (1360), Expect = 2.000e-146
Identity = 269/453 (59.38%), Postives = 330/453 (72.85%), Query Frame = 0 
Query:    1 MPPTFSPPCP--LQDIEDAASTSSAS----FGSVAILDSCTGCISCRVLAPEIFHEARKTSSDPTVFTEVAPGRPLQSLEEAQQVREAIMSCPVHAIKWVKRPRDLKVRPLTEGYPKPVSVEKKENVFLAGVPSKKLFGGASFLISRGGNGKDRNMLIDTPDCDEALVEYLKKRGGLDYIVFTHRDHIACHREWKQAFPDVQRVLHADDFTDETIKFEVKLQGSG----GSGGSSRSTAPLVCSLPGWEEEVQLIHGPGHTPGSIFVVFKNKYLFTGDSLHYSRIEGHLVGFRLQCWESWSRQQASWEALLRRPVPFLHVLPGHGEPHRFASVEEAHGSLEACLKWAKQLPDGYTPMGRFRMWAITRTTSKRRWLRWVVDNVVLPAGSKVAIPLYRLDEGD-RDGRRKVFGGMSSMVVAVVSMLVGVGVGL--------VAAGAGGGGGGRGG 435
            +PP+   PCP  ++D+ED  +    S    FGSVAILDSCTGC +CRVLAP+IF EAR+TS DPT+FTEVA GRPL+S+EEA+QVREA+M+CPVHA+KWVKRP+ LK RPLTEGYPK +     ENV++ G PSKKLFGGAS+LI   GN + RN+L+DTPD +EALV+ ++  GGLDYI+FTH DH++ HR WK+AFP+VQRV+HADDF D+T  FE+KLQG        GG   +  PLVCSLPGWE+E++LIHGPGHTPGSI+V++K K+L TGDSLHYSR  GHLVGFRLQCWESWSRQQ SW  LLR    F  VLPGHGEPHRF +  EA  SL A ++WA   PDG TP  RFR+WA TR TS+R+WLRW+ DN+VLP GS++AIP Y    G   +G      G+ +M+ ++  +  G GV L        VA G G   GGR G
Sbjct:    5 LPPS---PCPAVVRDVEDIVAMPLVSDTQHFGSVAILDSCTGCTTCRVLAPDIFLEARRTSRDPTIFTEVA-GRPLRSMEEAEQVREAVMACPVHAVKWVKRPKALKARPLTEGYPKLLD----ENVYVGGPPSKKLFGGASYLIVGQGNKRGRNILVDTPDPEEALVDRVRALGGLDYIIFTHIDHVSLHRAWKEAFPNVQRVMHADDFNDDTQDFEIKLQGGKTARTADGGIHDAAPPLVCSLPGWEDELELIHGPGHTPGSIYVLYKEKFLCTGDSLHYSRAVGHLVGFRLQCWESWSRQQTSWRRLLRHSSAFSWVLPGHGEPHRFPTPGEARESLAAAIQWALGFPDGRTPSRRFRLWATTRVTSRRKWLRWLADNLVLPPGSRLAIPCYAGPAGAVLEGGGGPGSGLGAMLQSLCKIDRGTGVALGLTSFVLGVAVGVGWAEGGRRG 449
The following BLAST results are available for this feature:
BLAST of NO20G01200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22126.12.000e-14659.38beta-lactamase domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01200NO20G01200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01200.1NO20G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01200.1.cds1NO20G01200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01200.1 ID=NO20G01200.1|Name=NO20G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
ATGCCTCCGACCTTCTCACCCCCCTGCCCACTCCAAGACATTGAGGACGC
CGCATCTACCTCCTCAGCCTCATTTGGCAGCGTGGCTATTCTAGACAGCT
GCACGGGCTGCATATCCTGCCGTGTCCTCGCTCCTGAAATTTTTCACGAG
GCCCGCAAGACTTCGTCAGACCCGACGGTGTTCACCGAGGTAGCACCAGG
GCGGCCGCTTCAATCGTTGGAGGAGGCACAGCAAGTCCGAGAGGCTATTA
TGTCCTGCCCCGTGCATGCCATCAAGTGGGTGAAGCGCCCTCGGGATTTA
AAAGTTCGTCCGCTGACTGAGGGCTACCCCAAGCCGGTCTCAGTGGAAAA
AAAAGAGAATGTATTCTTGGCGGGCGTCCCGAGTAAGAAGCTATTTGGGG
GCGCGTCGTTTTTGATATCGAGAGGGGGGAATGGGAAGGACCGAAATATG
TTGATTGATACGCCCGACTGTGACGAGGCATTGGTGGAGTATTTAAAGAA
AAGGGGTGGGTTGGACTACATAGTATTCACGCACAGAGATCACATCGCGT
GCCATCGCGAATGGAAACAGGCCTTCCCCGACGTGCAACGTGTGTTGCAC
GCCGACGATTTCACTGACGAAACCATCAAATTTGAAGTCAAGCTGCAAGG
CAGCGGTGGCAGTGGTGGCAGCAGCCGCAGCACTGCCCCCTTAGTCTGTT
CCTTGCCCGGGTGGGAGGAGGAAGTACAGTTGATTCACGGGCCCGGGCAC
ACACCTGGGTCTATTTTTGTCGTGTTTAAAAACAAATACCTATTCACGGG
TGACTCTCTTCATTATTCGCGCATTGAGGGGCATTTGGTCGGTTTCCGAC
TGCAATGCTGGGAGAGCTGGTCGAGGCAGCAGGCGTCGTGGGAGGCCCTT
CTCCGTCGGCCGGTCCCCTTCCTCCACGTCTTACCTGGCCATGGCGAACC
CCACCGATTCGCTTCTGTCGAAGAGGCACACGGGAGCTTGGAGGCATGCT
TAAAGTGGGCGAAGCAACTGCCGGATGGGTATACGCCAATGGGGAGATTT
CGGATGTGGGCCATAACGAGGACGACGAGTAAAAGGCGGTGGCTGCGGTG
GGTGGTTGACAACGTGGTGCTGCCCGCCGGGTCAAAAGTGGCGATTCCAT
TGTATCGGCTGGATGAGGGTGATAGGGATGGACGGAGAAAGGTTTTTGGG
GGAATGTCCTCGATGGTGGTTGCGGTCGTGTCGATGCTTGTCGGTGTGGG
GGTGGGATTGGTGGCTGCAGGGGCGGGAGGAGGAGGGGGAGGAAGGGGGG
GAAGATGGGGGGGAAGATAA
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protein sequence of NO20G01200.1

>NO20G01200.1-protein ID=NO20G01200.1-protein|Name=NO20G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MPPTFSPPCPLQDIEDAASTSSASFGSVAILDSCTGCISCRVLAPEIFHE
ARKTSSDPTVFTEVAPGRPLQSLEEAQQVREAIMSCPVHAIKWVKRPRDL
KVRPLTEGYPKPVSVEKKENVFLAGVPSKKLFGGASFLISRGGNGKDRNM
LIDTPDCDEALVEYLKKRGGLDYIVFTHRDHIACHREWKQAFPDVQRVLH
ADDFTDETIKFEVKLQGSGGSGGSSRSTAPLVCSLPGWEEEVQLIHGPGH
TPGSIFVVFKNKYLFTGDSLHYSRIEGHLVGFRLQCWESWSRQQASWEAL
LRRPVPFLHVLPGHGEPHRFASVEEAHGSLEACLKWAKQLPDGYTPMGRF
RMWAITRTTSKRRWLRWVVDNVVLPAGSKVAIPLYRLDEGDRDGRRKVFG
GMSSMVVAVVSMLVGVGVGLVAAGAGGGGGGRGGRWGGR*
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mRNA from alignment at chr20:366806..368125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01200.1 ID=NO20G01200.1|Name=NO20G01200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp|location=Sequence derived from alignment at chr20:366806..368125- (Nannochloropsis oceanica)
ATGCCTCCGACCTTCTCACCCCCCTGCCCACTCCAAGACATTGAGGACGC
CGCATCTACCTCCTCAGCCTCATTTGGCAGCGTGGCTATTCTAGACAGCT
GCACGGGCTGCATATCCTGCCGTGTCCTCGCTCCTGAAATTTTTCACGAG
GCCCGCAAGACTTCGTCAGACCCGACGGTGTTCACCGAGGTAGCACCAGG
GCGGCCGCTTCAATCGTTGGAGGAGGCACAGCAAGTCCGAGAGGCTATTA
TGTCCTGCCCCGTGCATGCCATCAAGTGGGTGAAGCGCCCTCGGGATTTA
AAAGTTCGTCCGCTGACTGAGGGCTACCCCAAGCCGGTCTCAGTGGAAAA
AAAAGAGAATGTATTCTTGGCGGGCGTCCCGAGTAAGAAGCTATTTGGGG
GCGCGTCGTTTTTGATATCGAGAGGGGGGAATGGGAAGGACCGAAATATG
TTGATTGATACGCCCGACTGTGACGAGGCATTGGTGGAGTATTTAAAGAA
AAGGGGTGGGTTGGACTACATAGTATTCACGCACAGAGATCACATCGCGT
GCCATCGCGAATGGAAACAGGCCTTCCCCGACGTGCAACGTGTGTTGCAC
GCCGACGATTTCACTGACGAAACCATCAAATTTGAAGTCAAGCTGCAAGG
CAGCGGTGGCAGTGGTGGCAGCAGCCGCAGCACTGCCCCCTTAGTCTGTT
CCTTGCCCGGGTGGGAGGAGGAAGTACAGTTGATTCACGGGCCCGGGCAC
ACACCTGGGTCTATTTTTGTCGTGTTTAAAAACAAATACCTATTCACGGG
TGACTCTCTTCATTATTCGCGCATTGAGGGGCATTTGGTCGGTTTCCGAC
TGCAATGCTGGGAGAGCTGGTCGAGGCAGCAGGCGTCGTGGGAGGCCCTT
CTCCGTCGGCCGGTCCCCTTCCTCCACGTCTTACCTGGCCATGGCGAACC
CCACCGATTCGCTTCTGTCGAAGAGGCACACGGGAGCTTGGAGGCATGCT
TAAAGTGGGCGAAGCAACTGCCGGATGGGTATACGCCAATGGGGAGATTT
CGGATGTGGGCCATAACGAGGACGACGAGTAAAAGGCGGTGGCTGCGGTG
GGTGGTTGACAACGTGGTGCTGCCCGCCGGGTCAAAAGTGGCGATTCCAT
TGTATCGGCTGGATGAGGGTGATAGGGATGGACGGAGAAAGGTTTTTGGG
GGAATGTCCTCGATGGTGGTTGCGGTCGTGTCGATGCTTGTCGGTGTGGG
GGTGGGATTGGTGGCTGCAGGGGCGGGAGGAGGAGGGGGAGGAAGGGGGG
GAAGATGGGGGGGAAGATAA
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Coding sequence (CDS) from alignment at chr20:366806..368125-

>NO20G01200.1 ID=NO20G01200.1|Name=NO20G01200.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr20:366806..368125- (Nannochloropsis oceanica)
ATGCCTCCGACCTTCTCACCCCCCTGCCCACTCCAAGACATTGAGGACGC
CGCATCTACCTCCTCAGCCTCATTTGGCAGCGTGGCTATTCTAGACAGCT
GCACGGGCTGCATATCCTGCCGTGTCCTCGCTCCTGAAATTTTTCACGAG
GCCCGCAAGACTTCGTCAGACCCGACGGTGTTCACCGAGGTAGCACCAGG
GCGGCCGCTTCAATCGTTGGAGGAGGCACAGCAAGTCCGAGAGGCTATTA
TGTCCTGCCCCGTGCATGCCATCAAGTGGGTGAAGCGCCCTCGGGATTTA
AAAGTTCGTCCGCTGACTGAGGGCTACCCCAAGCCGGTCTCAGTGGAAAA
AAAAGAGAATGTATTCTTGGCGGGCGTCCCGAGTAAGAAGCTATTTGGGG
GCGCGTCGTTTTTGATATCGAGAGGGGGGAATGGGAAGGACCGAAATATG
TTGATTGATACGCCCGACTGTGACGAGGCATTGGTGGAGTATTTAAAGAA
AAGGGGTGGGTTGGACTACATAGTATTCACGCACAGAGATCACATCGCGT
GCCATCGCGAATGGAAACAGGCCTTCCCCGACGTGCAACGTGTGTTGCAC
GCCGACGATTTCACTGACGAAACCATCAAATTTGAAGTCAAGCTGCAAGG
CAGCGGTGGCAGTGGTGGCAGCAGCCGCAGCACTGCCCCCTTAGTCTGTT
CCTTGCCCGGGTGGGAGGAGGAAGTACAGTTGATTCACGGGCCCGGGCAC
ACACCTGGGTCTATTTTTGTCGTGTTTAAAAACAAATACCTATTCACGGG
TGACTCTCTTCATTATTCGCGCATTGAGGGGCATTTGGTCGGTTTCCGAC
TGCAATGCTGGGAGAGCTGGTCGAGGCAGCAGGCGTCGTGGGAGGCCCTT
CTCCGTCGGCCGGTCCCCTTCCTCCACGTCTTACCTGGCCATGGCGAACC
CCACCGATTCGCTTCTGTCGAAGAGGCACACGGGAGCTTGGAGGCATGCT
TAAAGTGGGCGAAGCAACTGCCGGATGGGTATACGCCAATGGGGAGATTT
CGGATGTGGGCCATAACGAGGACGACGAGTAAAAGGCGGTGGCTGCGGTG
GGTGGTTGACAACGTGGTGCTGCCCGCCGGGTCAAAAGTGGCGATTCCAT
TGTATCGGCTGGATGAGGGTGATAGGGATGGACGGAGAAAGGTTTTTGGG
GGAATGTCCTCGATGGTGGTTGCGGTCGTGTCGATGCTTGTCGGTGTGGG
GGTGGGATTGGTGGCTGCAGGGGCGGGAGGAGGAGGGGGAGGAAGGGGGG
GAAGATGGGGGGGAAGATAA
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Synonyms
Publications