Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr20 genome chr20:232088..237478 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G00690.1 vs.
Match: XP_005854200.1 (2 -phosphodiesterase 12-like protein [Nannochloropsis gaditana CCMP526]; EKU22164.1 2 -phosphodiesterase 12-like protein [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 356.3 bits (913), Expect = 2.700e-94
Identity = 216/411 (52.55%), Postives = 255/411 (62.04%), Query Frame = 0
Query: 477 LLSYNADMTCLQEVDERVFRDLLSPILSASGLRGFFLSKCGGTREGAAFFYRTERLSCLATHRVVMREAFQKEDSPFKALQARYPSLRTILQEKLTTVGQIVLLRLKAVDGDGRDTLLLVGNTHLFYHPKAQHIRLMQMATLLREMEAHQARAEEEYGISPRLVVCGDLNSTPHTATIRYLTGETISPGDEVWKWINAFGWGKRQGEAGEEPVGTAAGVTAVGAAAGGKEVEEEEEEEVEERDLDADVAEKINAGQSSARMVPKEGGKQGAGEE-------EEEEEEEEEEEEEEEEEEGGVFVPDATVIPSLSLARPFISACGFPDFTNYVQGFVETLDYIFLQSSTATTPTAAAAATATVPATPVAPADFSVLSVAAMPTREEAGADTALPSWQTPSDHVSIMCDVQLK 881
+LSY+ D+ CLQEVDERVFR+LLSP+L +SGL GF SKCG TREGAA FYR ERL+C+ T MREAF ++D+PFK LQ RYP+LR IL EKLTTVGQIVLLRL +MATL+REM A Q E+++G+ PRLV+CGDLNSTP TATIRYL GETI P DEVW+ ++ FGWGKRQGE E+ G AA AV A GK+ EE + V + G++ G E E EE+E+E+ +E G D VIP+L L RPF SACG PDFTNYVQGFVETLDYIFL+S A VP P + A FSVLSV AMPTREEAG DTALPSWQ PSDHVSI+CDV+++
Sbjct: 1 MLSYSPDLVCLQEVDERVFRELLSPVLLSSGLAGFHHSKCGNTREGAALFYRLERLACMGTFDFEMREAFDRKDNPFKPLQDRYPALRAILCEKLTTVGQIVLLRL-------------------------------EMATLVREMTARQGEIEDKFGVRPRLVLCGDLNSTPTTATIRYLRGETIGPEDEVWEHLHVFGWGKRQGEGEEKEEGEAAATAAVLEAEEGKKGGEE---------------------GGDGKAVAVDDGRESRGRETLLSSRATPRVEAREEKEKEKNSKEKGSMASDGDVIPTLCLTRPFFSACGLPDFTNYVQGFVETLDYIFLESE------------APVPLDP-SGASFSVLSVGAMPTREEAGQDTALPSWQAPSDHVSILCDVRVQ 346
The following BLAST results are available for this feature:
BLAST of NO20G00690.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2800 Expect = 2.70e-94 / Id = 52.55 Sequence XP_005854200.1
Match Name E-value Identity Description
XP_005854200.1 2.700e-94 52.55 2 -phosphodiesterase 12-like protein [Nannochlorop... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO20G00690.1 ID=NO20G00690.1|Name=NO20G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2816bp back to top protein sequence of NO20G00690.1
>NO20G00690.1-protein ID=NO20G00690.1-protein|Name=NO20G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=881bp back to top mRNA from alignment at chr20:232088..237478-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00690.1 ID=NO20G00690.1|Name=NO20G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=5391bp|location=Sequence derived from alignment at chr20:232088..237478- (Nannochloropsis oceanica)ATGCCCACCAGCGGCCG
CCGCGAGCCTCACTCCAACCCATTACCACCATTGCCACTGCTGCTTCTAG
CTGCCTTCTTTCTGTGTAGCACTGCCTTTCACGCGCCATCGACCCTTCGT
TTCTCACATCCGTCTTGTTCATCGCTCGCTGCTACTTCCGCTGCCACCAC
CGTCGCAGCGTCTCCCAGTAGCAGCATCATTCCCACCCCCACCTGCACTA
CCACCACTACCACCACCAGCAGCAGCAGAAGCAGCAGCAGCAGTCGCAGC
AGCAAACGGAAGAAGCACCCGTCCGCCCGTCAAAACCGGGAGCCAAAAGG
GGACCAAGGCCGCGTGGAGCGACAGGCTAATCACATGGACCAGCTGCACA
TCCGGAACGTGGCAGACGAGGCGGAGATCGAACTGACCTTCTTCGATGTG
GATGGAAAG GTACGAGGCAGCAGAAAAAGGGGTGCCGAAAAGTCCCCAGC
TTCAAGATCAACGAGGAACATTCATGGCATTAACGCTTACCACCGGTATT
CTACTCACCATGTTCCCTCTCTCCCTTCCTCCCTCTCTCCCTCTCTTGCA
TTCCTATTTTTTCACAACAACAGCTGTGTCAACTTCGTCGTGCACGGACT
GAGACAGCAGGAGCGACATTACGGCGATTTGGGGCCAAGGTGGTGGGGAG
TGGTGGCGGCGGTGGAGGAAAAGGAGGGAAGGGTGGCAAGAAGCAAGGAA
AGAAGAATGTAATTGGGATGCAAGCGCAG GTAGGGAAAGAGGGAGAGAAG
GAGGAAGGGAAGGAGGGATGGAGGGGAAAATGACAATTTAGAGGTGGGGA
GCTTGTATTATGCATCATGGCCATTTGAATTTCAACTCGTTGATTAGGGC
TTGGTGCCAGGTAATATTAAAGTTCACGATCTGTCCCGCCCTCCCTCCCT
CCTTCCCTCCCTCCCTTTCCTCCCTCCCTCGGTCCCCTGCAGCTGCACAT
GAAGCTGTTGGATGGAACGAGTGAGCTGAACGTGGAGGAGATGAGTGTAG
CCGATGCATGGGCCGATGGGCGAGAGCTTTGGGTCCTGCGGGGCGCACAG
GGCGTGGCTGAGTGGGAGGGAAGGGAGGAGGGAGGGAAGGAGGAAGGGGA
GGGAGGACGGCGGTACGTGCTGAGGTATCGAGTGAGGGTAAATCCACCTC
ACATCACCGAGCTGCGATTTTCGAGCAA GTAAGGAGGGTAGGAGGGGAGG
AAGGGAGGGAGGGAGGGAGGGATGTCACATGTTCAGTCGATTCACTCCCC
CTCCCTCCCTCCCTCACTTGTTATTCACCAGATTAATCATGGCTGGCTTC
CCAGTGAACGTCCTGGCCCGTACACTCTTCGCAGACGGCGTCAACTATCG
GTGGCAGGTGGAGAGGGAGGATAA GTAAGTAAGAGGGAGGGTGGGAGGGA
GGGAGGGGGGAGGGAGGGAGGGACAGCACAGTAAGGATAAGGAAGGAGGG
AGGGAGGGAGGGAGGGAGGGGGGAGGGAGGGAGGGAGCACAGGCCATACC
TGTCCTGTGGTACTCATTCCCCAACCACTTTCCCTTCCTCCCTCCCTCCC
TCCTTCCTTATCCTCCCTCCTTCTTACCTTTCCTCTTTGATTCTCTCTAG
ATGGACTCCATTCGACCCCACCGATGAGGCGGGCCCAGATACTCCTGTCG
TTTACCCCTCCCTCCCTCCCTCCCTTCCTTCCTCTTCCTCCTCCTCCCAC
CACCACCTCCACCACGTGGGCTGTCGGATGCGAGTGCTGTGTACGCCGTA
CCGACATCAGCCGCAGCAACAAGCGCAACGGGAGGAGGGGGCCAAAGGAG
GGGAGAAAAAAGGACAAGACGAAAGGGAGGACGAGGAAGCAGTCGTCTG G
TGCGTAAGCAAGCCACGTCATTGCGGGCCCATCACGATCCGTTTCGAGCC
ATCCCTCCCTTCTTTCCTTCCTTCTTCCCTCCACACTCGCCACTCCCTCC
TCATTTATTTCCCGCCTTTCGCGGCAAGACCGCTGCCTGCTCCATTCCTC
CCTCCCCCTCACCGATCCCTCCCTCCCTCCCTCCCTTCCCTCCTCCCTCC
TTCGGTTAGGGGGAGGACCATTACCTGCTACACCAGCAAGGCCGTCACTT
CTCCCTCCTCTCCCTCCCTCACCCCTTGGCTGACACGCCTCCGGGTGCCT
CTTCCACTG GTACGGATGGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAAAGCATGAGGTCCTTGTTACTTGCAGAAGTTTGTGATTGGTTTGGGC
CGGATATAGCTTAGTTTATATTCACCTATACATCCGTCTTCTGAATATAT
CAACCCAGGAGCGCCTGGAGCGGACCAGGAGGGAGGAGAGGGTGTTAAGG
CTCGTGTCTTACAATATCCTGGCCGACAA GTTCGTCCTGGGAGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCAGGGGACG
CATACATGGCGCCGTCCCGCCAGCGGTCTCATCACAGTGGGTTATCTCCC
CTACTTCATGCATGATATCTTGACCTAGATGTTCAAGCGACTGAAGCCCC
ATGTCCATTCACTCCTCCCTTCCTCCCTTCCTCCCTCCCCCCCTCCCTCC
TCTTCTTCCCTAGCTACGCGACTTCTGCTTGGTCACAGAAGCACCTGTAT
CCCTATGTGCATCCCTCCCATCTTCACTCCGAATATCGGACGCTCCTCAC
CGTGAAAGAGCTCTTGTCGTATAATGCAGACATGACCTGCTTGCAAGAG G
TAGGCGTGTGTACTCCCTTCCTCTCTCCCTCCCTTCCTTCCTTCCTTCCT
CCCTCCCTCCTCGCTTTTCTTTCCCCTCTTTCTTAAGTACCATCCCATTC
AATTTGATCTCCCTCCCTCAGGTGGACGAGCGCGTCTTTCGAGACCTTCT
CTCTCCCATCCTCTCGGCTTCGGGCCTTCGCGGTTTTTTCCTTTCCAAGT
GCGGAGGGACAAGGGAAGGAGCCGCATTCTTCTATAGGACGGAACGGCTG
TCGTGCCTCGCTACCCACCGGGTTGTCATGCGCGAGGCTTTTCAAAAGGA
AGATTCGCCCTTCAAG GTATCCCCTCCCTCCTTCCCTCCCTCCCTCCCTC
TCTCTCCTACCTTCTTCCCTCCCTCCCTCCCTCCCACCCTCTCCCATATC
GATACACATTCGTGACCCCCCTCGCTCCCTCCCTCGCTCCCTCCCTCCCT
CCCTCAGGCCCTTCAAGCCCGCTACCCATCCCTCCGTACCATCCTCCAGG
AGAAACTCACAACCGTCGGACAGATTGTGTTGCTGCGCCTCAAG GTGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTCGACGGGAGGGAAGGAGGG
GGCTTCATGAATCCTATGCTTCCCCCCTCAAGTCGAATGGAGAATACGCG
GGGGGGATGCAGCGAGGAAGAGAGGACTCAGGCCGAGGGAGCAAAAGGCT
TCATTGAATCAAATTGGATTCAAAATTGAATTCGGATGGCTCGTTTCATC
GTTTCTTGACAGGCGGTAGACGGGGATGGACGAGACACACTCCTCCTGGT
GGGCAACACGCATTTATTCTATCACCCCAAGGCACAGCACATCCGCCTGA
TGCAG GTAGAGAGGGAGGGAAAGAGGAAGGGAGGGAAGGGAGAAGGAGAA
GGGAGGGTGGTGTTTTGTTTTTGATGGATGAATGGGTGACTTTCCCTCCC
TCCCTCCCTCCCTCCCTTCCTTCCTCTTTTAGATGGCCACCCTTCTGAGG
GAAATGGAAGCTCATCAAGCCCGGGCGGAGGAGGAGTACGGCATCTCCCC
GCGCCTGGTCGTGTGCGGAGATCTGAACAG GTAGGGAGGGAGGGAGGGAG
GGAAGGAAAAAAGGAAGGAGAGATGGGGGGATACGAAGGCTGGAGGTCGG
AAGAGCATTGCTGTCGCTCACCCTCCCTCCCTCCCGCCCTCCCGCCCTCC
CTCAGCACCCCGCACACAGCCACCATTCGGTACCTGACTGGGGAAACTAT
TTCCCCTGGTGACGAGGTCTGGAAGTGGATTAATGCCTTCGGGTGGGGGA
AGCGGCAGGGGGAGGCGGGAGAAGAGCCGGTGGGGACAGCAGCAGGAGTA
ACGGCTGTCGGAGCAGCTGCAGGAGGGAAGGAGGTGGAGGAGGAGGAGGA
GGAAGAGGTAGAAGAAAGGGACCTGGACGCAGATGTAGCCGAGAAG GTAA
ACACATTTCTTCATTCCCTCCCTCTCTCCCCTCCCCTCCCTCCCTCCCTC
CCTCCCTCACTCCTCTGCGGGTCTTATCTACGCTTGGGGTCGTTTGAAAT
TCCGCAGCAACCCTCAGTTATTTCATTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTCTTCCTGAGTGATTGCTTAATTTTGACCATG
TCTTACGCATATCCCCCCCGCGCATACGGACGGTACGCCACACCAAGCAG
ATTAATGCAGGTCAAAGTAGCGCCAGGATGGTGCCAAAAGAAGGCGGGAA
GCAGGGGGCAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGGAGGCGTGTTTGTGCCCGATGCCACT
GTCATTCCCTCCTTGTCCCTTGCGCGGCCTTTCATCTCTGCGTGTGGTTT
CCCTGACTTTACCAATTACGTGCAG GTATTGCGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGCGGATGTGGTGGTGTTGTTGATGTTCAAAGGGA
TCTAATGATCTGAATAATCATACATAAATATATATATATATATATATAAA
ATTGATAGAAGCTTTATATATACATTCTATGTCATTTTGTGTATGCAAAA
GAGGGAAACGATGCAGGAAGTTCGAGCGGTCTCGAGGAAGATGTTTGTCC
ATGATCCTAACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTAC
CTCCCTCATGCCAGGGCTTCGTCGAGACCCTGGACTACATCTTCCTTCAA
TCATCCACCGCCACTACACCTACTGCTGCTGCTGCTGCTACAGCTACAGT
TCCTGCTACTCCTGTTGCTCCTGCAGATTTTTCCGTCCTTTCCGTGGCGG
CTATGCCAACGCGGGAGGAAGCAGGGGCTGACACCGCCCTGCCCTCCTGG
CAAACCCCCTCGGACCACGTCAGCATTATGTGCGACGTGCAATTAAAGTA
G back to top Coding sequence (CDS) from alignment at chr20:232088..237478-
>NO20G00690.1 ID=NO20G00690.1|Name=NO20G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=2643bp|location=Sequence derived from alignment at chr20:232088..237478- (Nannochloropsis oceanica) back to top