NO20G00620.1, NO20G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00620.1
Unique NameNO20G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1047
Alignment locationchr20:209660..210706 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:209660..210706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00620NO20G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00620.1NO20G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00620.1.cds1NO20G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00620.1 ID=NO20G00620.1|Name=NO20G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp
ATGAAATCGGCTGAAAAAGAGGGCGAAGGGATTGAGGAAAGCAGGGCTGC
AGGAGCGGGAGATGAGGAAGGAACGAAACGAAGCGAGGTGGAAGGGGCAC
CTATCGCCGGTGAGGACGAAGGAAAGAGAGGAGGAGGAAAGGATAGGGTG
AATTCGAAGCGCGCGAAAGTCGACAGCGGCTGCAAGAGCAGCAGGAGCAG
CAGCAGCAGCAGCGATGGTGGACAAGCAGGTGTGATGGTGGGCACTCATC
AGCTGCAGGAACTACTACCACAACAACAAAAACAACAACAACAACAACAA
CGACAACGACAGCACCAGCAGCTGCAGCAGCAGCAAGGGTCGACTGTCCA
GCCAGATTCTTTATCTAATCCTTCGCAACATCATTCTGATGGAGGAGGCG
GGGTGGAAAGGGGGCAGCGTCGACAGCAGGCAGACCCGCAGGTGGTGGAG
GAAAGGGAGGAGGAGAAGGAGGGGTTTCACATCCCGCACTGGGCCACGGG
AGCACAAGATATGGGAGGGACACAGCTCTCGGAGGGTCATACGGTCTTGA
GTGATAATGAATGGCAGCTGCTGGATGACGAGGGGGAGATGGAGGTAGAG
GAGGAGGGTGGGGAGGATGGAGGACAGCTACAACTTAGCAAAAAAGAGGA
GGAAGAAAGCATGAAGGCGGCGGTGGGGGAGGAAGAAGTGGCAGCTGTGA
TGTATTCGTCATCTACCAGTGCTACTCCTGCCACGGCAATTGGTAAGGAG
CCAAGAGATATCGACGCTGCTGCTGCTGCTACTACTGCAGCTGCTGCTGC
TGCTGCTCCTGTCGTTGCAGCTGCTGCTAGTGCTCCGACAGCTGTTTCTA
CTGGTACTCATAACAGAGCCTTCCTCGTGCCGACCCCCATTTCACACCGA
GGCGACGGCAGTCAAAGTCACAGCCAAAACGAGAATCAAAGTCAGCAGGG
CCAAGGGAAGGATGGGGAGGGACGGAGGCAGCAGCCACATGTGCAACAGA
TTAAAAGAGGTGACCACTCTCAGGGTAGTGGGACCCCATCACAATGA
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protein sequence of NO20G00620.1

>NO20G00620.1-protein ID=NO20G00620.1-protein|Name=NO20G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MKSAEKEGEGIEESRAAGAGDEEGTKRSEVEGAPIAGEDEGKRGGGKDRV
NSKRAKVDSGCKSSRSSSSSSDGGQAGVMVGTHQLQELLPQQQKQQQQQQ
RQRQHQQLQQQQGSTVQPDSLSNPSQHHSDGGGGVERGQRRQQADPQVVE
EREEEKEGFHIPHWATGAQDMGGTQLSEGHTVLSDNEWQLLDDEGEMEVE
EEGGEDGGQLQLSKKEEEESMKAAVGEEEVAAVMYSSSTSATPATAIGKE
PRDIDAAAAATTAAAAAAAPVVAAAASAPTAVSTGTHNRAFLVPTPISHR
GDGSQSHSQNENQSQQGQGKDGEGRRQQPHVQQIKRGDHSQGSGTPSQ*
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mRNA from alignment at chr20:209660..210706+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00620.1 ID=NO20G00620.1|Name=NO20G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp|location=Sequence derived from alignment at chr20:209660..210706+ (Nannochloropsis oceanica)
ATGAAATCGGCTGAAAAAGAGGGCGAAGGGATTGAGGAAAGCAGGGCTGC
AGGAGCGGGAGATGAGGAAGGAACGAAACGAAGCGAGGTGGAAGGGGCAC
CTATCGCCGGTGAGGACGAAGGAAAGAGAGGAGGAGGAAAGGATAGGGTG
AATTCGAAGCGCGCGAAAGTCGACAGCGGCTGCAAGAGCAGCAGGAGCAG
CAGCAGCAGCAGCGATGGTGGACAAGCAGGTGTGATGGTGGGCACTCATC
AGCTGCAGGAACTACTACCACAACAACAAAAACAACAACAACAACAACAA
CGACAACGACAGCACCAGCAGCTGCAGCAGCAGCAAGGGTCGACTGTCCA
GCCAGATTCTTTATCTAATCCTTCGCAACATCATTCTGATGGAGGAGGCG
GGGTGGAAAGGGGGCAGCGTCGACAGCAGGCAGACCCGCAGGTGGTGGAG
GAAAGGGAGGAGGAGAAGGAGGGGTTTCACATCCCGCACTGGGCCACGGG
AGCACAAGATATGGGAGGGACACAGCTCTCGGAGGGTCATACGGTCTTGA
GTGATAATGAATGGCAGCTGCTGGATGACGAGGGGGAGATGGAGGTAGAG
GAGGAGGGTGGGGAGGATGGAGGACAGCTACAACTTAGCAAAAAAGAGGA
GGAAGAAAGCATGAAGGCGGCGGTGGGGGAGGAAGAAGTGGCAGCTGTGA
TGTATTCGTCATCTACCAGTGCTACTCCTGCCACGGCAATTGGTAAGGAG
CCAAGAGATATCGACGCTGCTGCTGCTGCTACTACTGCAGCTGCTGCTGC
TGCTGCTCCTGTCGTTGCAGCTGCTGCTAGTGCTCCGACAGCTGTTTCTA
CTGGTACTCATAACAGAGCCTTCCTCGTGCCGACCCCCATTTCACACCGA
GGCGACGGCAGTCAAAGTCACAGCCAAAACGAGAATCAAAGTCAGCAGGG
CCAAGGGAAGGATGGGGAGGGACGGAGGCAGCAGCCACATGTGCAACAGA
TTAAAAGAGGTGACCACTCTCAGGGTAGTGGGACCCCATCACAATGA
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Coding sequence (CDS) from alignment at chr20:209660..210706+

>NO20G00620.1 ID=NO20G00620.1|Name=NO20G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr20:209660..210706+ (Nannochloropsis oceanica)
ATGAAATCGGCTGAAAAAGAGGGCGAAGGGATTGAGGAAAGCAGGGCTGC
AGGAGCGGGAGATGAGGAAGGAACGAAACGAAGCGAGGTGGAAGGGGCAC
CTATCGCCGGTGAGGACGAAGGAAAGAGAGGAGGAGGAAAGGATAGGGTG
AATTCGAAGCGCGCGAAAGTCGACAGCGGCTGCAAGAGCAGCAGGAGCAG
CAGCAGCAGCAGCGATGGTGGACAAGCAGGTGTGATGGTGGGCACTCATC
AGCTGCAGGAACTACTACCACAACAACAAAAACAACAACAACAACAACAA
CGACAACGACAGCACCAGCAGCTGCAGCAGCAGCAAGGGTCGACTGTCCA
GCCAGATTCTTTATCTAATCCTTCGCAACATCATTCTGATGGAGGAGGCG
GGGTGGAAAGGGGGCAGCGTCGACAGCAGGCAGACCCGCAGGTGGTGGAG
GAAAGGGAGGAGGAGAAGGAGGGGTTTCACATCCCGCACTGGGCCACGGG
AGCACAAGATATGGGAGGGACACAGCTCTCGGAGGGTCATACGGTCTTGA
GTGATAATGAATGGCAGCTGCTGGATGACGAGGGGGAGATGGAGGTAGAG
GAGGAGGGTGGGGAGGATGGAGGACAGCTACAACTTAGCAAAAAAGAGGA
GGAAGAAAGCATGAAGGCGGCGGTGGGGGAGGAAGAAGTGGCAGCTGTGA
TGTATTCGTCATCTACCAGTGCTACTCCTGCCACGGCAATTGGTAAGGAG
CCAAGAGATATCGACGCTGCTGCTGCTGCTACTACTGCAGCTGCTGCTGC
TGCTGCTCCTGTCGTTGCAGCTGCTGCTAGTGCTCCGACAGCTGTTTCTA
CTGGTACTCATAACAGAGCCTTCCTCGTGCCGACCCCCATTTCACACCGA
GGCGACGGCAGTCAAAGTCACAGCCAAAACGAGAATCAAAGTCAGCAGGG
CCAAGGGAAGGATGGGGAGGGACGGAGGCAGCAGCCACATGTGCAACAGA
TTAAAAGAGGTGACCACTCTCAGGGTAGTGGGACCCCATCACAATGA
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Synonyms
Publications