NO20G00450.1, NO20G00450.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO20G00450.1
Unique Name	NO20G00450.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1707
Alignment location	chr20:152851..155002 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr20	genome	chr20:152851..155002 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO20G00450.1 vs.
Match: EWM22156.1 (gpn-loop gtpase 2 [Nannochloropsis gaditana])

HSP 1 Score: 531.2 bits (1367), Expect = 2.500e-147
Identity = 276/358 (77.09%), Postives = 303/358 (84.64%), Query Frame = 0

Query:    7 GPRFGQAVIGPPGAGKTTYCHGMARFLAARGRAVAVVNLDPANDRLPYPVDIDVSELVNLADVMETQNLGPNGGLMYCMEYVEQNLDWLFQRLEALQGRRYMLLDFPGQVELYTHGNTVQRLLKRLEQWGCRLTTVHLIDAHHCSDAGKFISATLISLTTMVRLELPHVNVLSKIDLIESCGRLAFDLNFYTDVMEVRNLLPYLEARP--MDPRKKDNE----EDE--MEEEVGE-EVEDGEGQMRGGMDR------MFARRYHKLNEAMCELIEDYSLVAFHPLNIEDGKCIARVLAVVDKCNGYLLGAEERAKEG-GGEAALLSTLAGLAFRAQPDADRVKDVQDRYMDKEDGVES 349
            GPRFGQAVIGPPGAGKTTYCHG+ARFL+ARGR VAVVNLDPAND+LP+PVDIDVSELVNLADVMET NLGPNGGL+YCM+Y+EQN DWL +RLEALQGRRY+L DFPGQVELYTHG  VQRLL+RLE+WGCRLT VHL+DAHHCSDAGKFISA LISLTTMVRLELPHVNVLSK+DL+ES GRLAFDLNFYTDV++V+ LLPY+  R    DP ++  E    EDE   EEEV E  +EDG    R G +        FARRY KLNEA+CELIED+SLVAFHPLNI+D  CI RVLAVVDKCNGYLLGAEERA  G  GEAALLSTL+GLAFRAQPDADRVKDVQDRYMD ED  E+
Sbjct:    8 GPRFGQAVIGPPGAGKTTYCHGIARFLSARGRPVAVVNLDPANDKLPFPVDIDVSELVNLADVMETHNLGPNGGLVYCMDYLEQNFDWLLERLEALQGRRYVLFDFPGQVELYTHGEAVQRLLQRLEKWGCRLTAVHLVDAHHCSDAGKFISAVLISLTTMVRLELPHVNVLSKVDLVESYGRLAFDLNFYTDVVDVQRLLPYVGTRSTYKDPGREGEEGGGREDENGWEEEVREGSIEDGGEGKRDGREAGTSGGGRFARRYRKLNEALCELIEDFSLVAFHPLNIQDADCIERVLAVVDKCNGYLLGAEERALVGREGEAALLSTLSGLAFRAQPDADRVKDVQDRYMDIEDRDEN 365

The following BLAST results are available for this feature:

BLAST of NO20G00450.1 vs.

BLAST of NO20G00450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22156.1	2.500e-147	77.09	gpn-loop gtpase 2 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO20G00450	NO20G00450	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO20G00450.1	NO20G00450.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO20G00450.1.cds1	NO20G00450.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00450.1.cds2	NO20G00450.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00450.1.cds3	NO20G00450.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO20G00450.1.cds4	NO20G00450.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr20:152851..155002-
coding sequence from alignment at chr20:152851..155002-

mRNA sequence

>NO20G00450.1 ID=NO20G00450.1|Name=NO20G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
CGGACGGGCAAGGGCGTAGGAGCTGGCTAGCGAGGGGAAGACTTTACATA
AGTGTGGAGAGCGGTAAGGTGGGTTACCAAGAAGATATACGACTTCATTT
CCAATTTTTACCGCTGCTACTGCCGCTGGTCTTGATGCGCTTTTGTCATA
CAAAGAGGGAATGGAGAAGGGAAGGCACGTGGCGGCGAAACAAGTACGTA
CCTCCGTGTCGGCGACCGCAGGACAAGGCCCAAGGCACGGAGCATTTTAT
CCTCCTGTGCGTGTGTGTGAGAGAGAGAGGGGTGAGCGCCATTGTTCGTG
GTTTGGTCCTGAATATAGGAGAAAAACTCTACAACAATAAACAATGCCAA
GCAGACCAACCTCCTCACCCTACCTCTAACCAGTCCTCTCCCCCTCCTCT
CTCGACTCGACACAGCGCCAGAACGCACAACAAGAGCCCGACGCACATAT
GACCTCTTCCTCGGTCGGCCCACGCTTCGGACAGGCTGTCATAGGTCCTC
CAGGGGCGGGAAAGACGACTTACTGCCACGGCATGGCCCGCTTCCTAGCC
GCACGCGGACGTGCCGTGGCGGTGGTCAATCTAGACCCTGCAAATGACCG
GCTGCCGTACCCAGTTGATATTGATGTGTCGGAGCTCGTCAATTTGGCGG
ACGTAATGGAAACACAGAACTTGGGGCCGAATGGCGGCTTGATGTATTGC
ATGGAGTATGTCGAGCAGAATCTGGACTGGCTTTTTCAGCGCTTGGAGGC
GTTGCAGGGGAGGCGGTATATGCTGTTAGACTTCCCCGGACAGGTGGAGC
TGTACACGCACGGAAATACGGTGCAACGACTCTTAAAGCGCTTGGAGCAA
TGGGGATGTCGCCTGACGACCGTGCACCTCATCGATGCCCATCACTGCAG
CGATGCCGGTAAATTTATCTCGGCGACATTGATCTCTCTCACGACCATGG
TGCGGCTAGAACTACCTCACGTGAATGTGTTAAGCAAAATTGACTTGATT
GAAAGCTGCGGTCGTTTGGCTTTCGATTTGAATTTTTATACTGATGTTAT
GGAGGTCCGAAATTTGTTGCCGTACTTGGAGGCAAGACCCATGGATCCAC
GCAAGAAAGATAATGAGGAGGATGAAATGGAGGAAGAGGTGGGGGAGGAG
GTGGAGGATGGGGAGGGGCAGATGAGGGGAGGTATGGATAGGATGTTTGC
AAGGCGGTATCATAAACTGAATGAGGCCATGTGTGAATTAATCGAGGACT
ATTCATTGGTGGCGTTTCATCCGTTGAACATCGAGGACGGAAAATGCATA
GCTCGTGTCTTGGCGGTGGTTGATAAATGCAACGGGTATTTGTTAGGGGC
AGAAGAGAGGGCAAAGGAGGGAGGCGGGGAGGCGGCATTGCTGTCGACGC
TGGCCGGGTTGGCGTTTCGGGCACAGCCGGATGCAGACCGCGTCAAGGAT
GTTCAGGATCGATATATGGATAAGGAGGATGGGGTGGAGAGCTAAGACTG
TGTATGTATCTTATTTCCAACAAAATGATTAAATCAAGTAACCATCTGAT
CGAGGCAGATTTTTGGATTGTTTGGAATGACATTGTTTTTCAACAAGTAT
TACTTGTTCTTTACTCTCTGACTTTTTATATATGATGAGGGAAAATAAAA
TAATTAAGTCCTAAAATTGTAAAATCGAAGAAATCAATCAAATTAACAAA
AACAATG

protein sequence of NO20G00450.1

>NO20G00450.1-protein ID=NO20G00450.1-protein|Name=NO20G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MTSSSVGPRFGQAVIGPPGAGKTTYCHGMARFLAARGRAVAVVNLDPAND
RLPYPVDIDVSELVNLADVMETQNLGPNGGLMYCMEYVEQNLDWLFQRLE
ALQGRRYMLLDFPGQVELYTHGNTVQRLLKRLEQWGCRLTTVHLIDAHHC
SDAGKFISATLISLTTMVRLELPHVNVLSKIDLIESCGRLAFDLNFYTDV
MEVRNLLPYLEARPMDPRKKDNEEDEMEEEVGEEVEDGEGQMRGGMDRMF
ARRYHKLNEAMCELIEDYSLVAFHPLNIEDGKCIARVLAVVDKCNGYLLG
AEERAKEGGGEAALLSTLAGLAFRAQPDADRVKDVQDRYMDKEDGVES*

mRNA from alignment at chr20:152851..155002-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO20G00450.1 ID=NO20G00450.1|Name=NO20G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2152bp|location=Sequence derived from alignment at chr20:152851..155002- (Nannochloropsis oceanica)
CGGACGGGCAAGGGCGTAGGAGCTGGCTAGCGAGGGGAAGACTTTACATA
AGTGTGGAGAGCGGTAAGGTGGGTTACCAAGAAGATATACGACTTCATTT
CCAATTTTTACCGCTGCTACTGCCGCTGGTCTTGATGCGCTTTTGTCATA
CAAAGAGGGAATGGAGAAGGGAAGGCACGTGGCGGCGAAACAAGTACGTA
CCTCCGTGTCGGCGACCGCAGGACAAGGCCCAAGGCACGGAGCATTTTAT
CCTCCTGTGCGTGTGTGTGAGAGAGAGAGGGGTGAGCGCCATTGTTCGTG
GTTTGGTCCTGAATATAGGAGAAAAACTCTACAACAATAAACAATGCCAA
GCAGACCAACCTCCTCACCCTACCTCTAACCAGTCCTCTCCCCCTCCTCT
CTCGACTCGACACAGCGCCAGAACGCACAACAAGAGCCCGACGCACATAT
GACCTCTTCCTCGGTCGGCCCACGCTTCGGACAGGCTGTCATAGGTCCTC
CAGGGGCGGGAAAGACGACTTACTGCCACGGCATGGCCCGCTTCCTAGCC
GCACGCGGACGTGCCGTGGCGGTGGTCAATCTAGACCCTGCAAATGACCG
GCTGCCGTACCCAGTTGATATTGATGTGTCGGAGCTCGTCAATTTGGCGG
TACGTCTCTCTCCTTCAGTCCTGAAGGGATGGGAGAACGCGTTAAGAGGG
AGTGGGGAGTCGGGGTTGAGGTGGGAGAGGAGGGATGAAATTGATTGACT
CAGCGATCTCCCTGTCCGCTCCCCCTCTCCTCACCAAAGGACGTAATGGA
AACACAGAACTTGGGGCCGAATGGCGGCTTGATGTATTGCATGGAGTATG
TCGAGCAGAATCTGGACTGGCTTTTTCAGCGCTTGGAGGCGTTGCAGGGG
AGGCGGTATATGCTGTTAGACTTCCCCGGACAGGTACGTGTCTAGGTGGA
GGCATGGAGTATATATGGAGGGAGAGGATATCCTTATCTTTTTATTCAGA
CCTGTTTGCCCTTATCTAGCCCATCGATCATTCTCATGGCGCTTCCCCTC
CCTCCTGTCCCTCCCTTCATCCCTCCCTTTCATCCATTTTTTTTTCACGC
CTTCAATGCAGGTGGAGCTGTACACGCACGGAAATACGGTGCAACGACTC
TTAAAGCGCTTGGAGCAATGGGGATGTCGCCTGACGACCGTGCACCTCAT
CGATGCCCATCACTGCAGGTACGTGTGTGACTCACCTGCCTTCTCTCTAT
TATGTGGGGCTGTTTATCATTTCCCCTCCTTCCAGCCTTCCTACCCACTC
CGAGTTTATTCATTGTCCCTTTTTTTCTTGCCAATGACCACGCAGCGATG
CCGGTAAATTTATCTCGGCGACATTGATCTCTCTCACGACCATGGTGCGG
CTAGAACTACCTCACGTGAATGTGTTAAGCAAAATTGACTTGATTGAAAG
CTGCGGTCGTTTGGCTTTCGATTTGAATTTTTATACTGATGTTATGGAGG
TCCGAAATTTGTTGCCGTACTTGGAGGCAAGACCCATGGATCCACGCAAG
AAAGATAATGAGGAGGATGAAATGGAGGAAGAGGTGGGGGAGGAGGTGGA
GGATGGGGAGGGGCAGATGAGGGGAGGTATGGATAGGATGTTTGCAAGGC
GGTATCATAAACTGAATGAGGCCATGTGTGAATTAATCGAGGACTATTCA
TTGGTGGCGTTTCATCCGTTGAACATCGAGGACGGAAAATGCATAGCTCG
TGTCTTGGCGGTGGTTGATAAATGCAACGGGTATTTGTTAGGGGCAGAAG
AGAGGGCAAAGGAGGGAGGCGGGGAGGCGGCATTGCTGTCGACGCTGGCC
GGGTTGGCGTTTCGGGCACAGCCGGATGCAGACCGCGTCAAGGATGTTCA
GGATCGATATATGGATAAGGAGGATGGGGTGGAGAGCTAAGACTGTGTAT
GTATCTTATTTCCAACAAAATGATTAAATCAAGTAACCATCTGATCGAGG
CAGATTTTTGGATTGTTTGGAATGACATTGTTTTTCAACAAGTATTACTT
GTTCTTTACTCTCTGACTTTTTATATATGATGAGGGAAAATAAAATAATT
AAGTCCTAAAATTGTAAAATCGAAGAAATCAATCAAATTAACAAAAACAA
TG

Coding sequence (CDS) from alignment at chr20:152851..155002-

>NO20G00450.1 ID=NO20G00450.1|Name=NO20G00450.1|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr20:152851..155002- (Nannochloropsis oceanica)
ATGACCTCTTCCTCGGTCGGCCCACGCTTCGGACAGGCTGTCATAGGTCC
TCCAGGGGCGGGAAAGACGACTTACTGCCACGGCATGGCCCGCTTCCTAG
CCGCACGCGGACGTGCCGTGGCGGTGGTCAATCTAGACCCTGCAAATGAC
CGGCTGCCGTACCCAGTTGATATTGATGTGTCGGAGCTCGTCAATTTGGC
GGACGTAATGGAAACACAGAACTTGGGGCCGAATGGCGGCTTGATGTATT
GCATGGAGTATGTCGAGCAGAATCTGGACTGGCTTTTTCAGCGCTTGGAG
GCGTTGCAGGGGAGGCGGTATATGCTGTTAGACTTCCCCGGACAGGTGGA
GCTGTACACGCACGGAAATACGGTGCAACGACTCTTAAAGCGCTTGGAGC
AATGGGGATGTCGCCTGACGACCGTGCACCTCATCGATGCCCATCACTGC
AGCGATGCCGGTAAATTTATCTCGGCGACATTGATCTCTCTCACGACCAT
GGTGCGGCTAGAACTACCTCACGTGAATGTGTTAAGCAAAATTGACTTGA
TTGAAAGCTGCGGTCGTTTGGCTTTCGATTTGAATTTTTATACTGATGTT
ATGGAGGTCCGAAATTTGTTGCCGTACTTGGAGGCAAGACCCATGGATCC
ACGCAAGAAAGATAATGAGGAGGATGAAATGGAGGAAGAGGTGGGGGAGG
AGGTGGAGGATGGGGAGGGGCAGATGAGGGGAGGTATGGATAGGATGTTT
GCAAGGCGGTATCATAAACTGAATGAGGCCATGTGTGAATTAATCGAGGA
CTATTCATTGGTGGCGTTTCATCCGTTGAACATCGAGGACGGAAAATGCA
TAGCTCGTGTCTTGGCGGTGGTTGATAAATGCAACGGGTATTTGTTAGGG
GCAGAAGAGAGGGCAAAGGAGGGAGGCGGGGAGGCGGCATTGCTGTCGAC
GCTGGCCGGGTTGGCGTTTCGGGCACAGCCGGATGCAGACCGCGTCAAGG
ATGTTCAGGATCGATATATGGATAAGGAGGATGGGGTGGAGAGCTAA

Synonyms

Publications