NO20G00190.1, NO20G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00190.1
Unique NameNO20G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2985
Alignment locationchr20:67273..70868 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:67273..70868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00190.1 vs.
Match: EWM22215.1 (glutamine amidohydrolase [Nannochloropsis gaditana])

HSP 1 Score: 276.9 bits (707), Expect = 7.000e-71
Identity = 148/276 (53.62%), Postives = 186/276 (67.39%), Query Frame = 0 
Query:    8 RQHQHQHQHQLQQQEQRESPQPPQEASHLPPALSLPRAAFVYTRCYCEENVYLLLAKLQTLLISSSSGSPGQLSALFISNKIKTCPVWGQLAAGEDGSKNVERKDEREYKETGHKEHFDGDDNDDNEERERS----PVLWDYHVVALLETGDSAAFIYDLDTRLEPFPCPASEYVARAFRPDIPMKEEYRQRFRLVPFVPIFRDSFACDRSHMRRPDGSWNAPPPAYPPIRGSRAASPMTLPLFWNVDDQGEERIGGGRGGELGEILSLADLQARV 280
            R+  HQ +H  Q+ + ++     +E   LP AL+LPR+ F YTRC+CEENVYLLLAKL  L+ SS      QLSALF+SN +K CP+W Q   GE    N ++ ++RE   T        + N++N+  E S    P+LWDYHVVALLET    A++YDLDTRLEPFPCPA  YV +AF+PD+P++EEYRQRFR V F P+ RD FA DRSHMR  DGSW  PPP YPPIRG+ +AS MTLP FW VD++ E    GG  G+LGE+LSL DL  R+
Sbjct:   31 RKEPHQDEHLWQKSKGKQQNMMAREPC-LPTALALPRSCFTYTRCFCEENVYLLLAKLHALISSSEDLLGCQLSALFVSNSLKACPIWMQRETGE-ALGNADQVEDREEAGT--------EGNEENKIAEFSLNDGPILWDYHVVALLETPGGLAYVYDLDTRLEPFPCPAGAYVRKAFKPDLPLREEYRQRFRRVSFSPVLRDCFASDRSHMRALDGSWTVPPPLYPPIRGANSASAMTLPAFWKVDEEKEGEKEGGTEGKLGEVLSLGDLLKRI 296
The following BLAST results are available for this feature:
BLAST of NO20G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22215.17.000e-7153.62glutamine amidohydrolase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00190NO20G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00190.1NO20G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00190.1.cds1NO20G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00190.1.cds2NO20G00190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00190.1.cds3NO20G00190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00190.1.cds4NO20G00190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00190.1.cds5NO20G00190.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00190.1 ID=NO20G00190.1|Name=NO20G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2985bp
TCACAACATAATAATCTCCCCCGCACGCCTATTGTCCCTACCCACCACGC
CCTCCTTCCCCTCCCACAGCCACCACCTCCTGCACCGTCTGAGGAAAATG
GCAAACTGCCATCTCCAAAACCCGTTCCAAAAACTTAAACTGAGCGTCTT
CGGCGATGCGGCTAAAAGACGGCAAGTGCACAAACAAGGCTGCGCTGTGG
GCATGTCCACGGACCCGACACATCTCCAAAGAATTGAAGTAAAGGTAATT
ACACACAAACCGGCCGGGATTTGAGGAAATCGAAACCTCTTCGCGGGTAT
ATCCAGGTCCTGAAGGACTCTCAGCGTGTAAGGCTCGAGCTATTGTATGA
AGCGGCAAGGTCGAAAAAAGGGAGAAGGACGTGTCAGGGTTGGCGTGGGA
GACTGCGGCTTTCCAAGGCTGGAAAGCCCGTTCATCCGGGAAATCAAACG
ACGCTTCATTGTACCCCACGCTTTCTAAACGGAAGCCTTCGATATCGTTG
CGTACGCCTAGGTGCAGGAGCAAAAGGTTGTCTTCTTGCTGGAGGCCTTG
GGTTCTCAAGGTGGTGTGAATTTGCTGCAGCTCGGTTAGGGAGCCGATGG
CGGATGTTTCGAGAATGTGGGTGGAGATTTTAATGATATCTTCCGTCTTC
TGGATCTTATGGATACGTGTGATTGATAGAAAAAAGAGGAGGAAGTTAGA
GAAGAAGGGGAGAGCGCAAAGGATAACCAAAGATAAAAGACAGTTAGTCA
GTTGAAAGGAGTGACAAATCCGTGAGAGGCAGCTTGGAAAGAGGATGTCA
ATGGAAAGAGACAGTTTACGGATATTCGAGCGGGGGGGAAATTTCACCTG
GTCGCCCAGCCGCCGGACTAGGGTCTCGGAGGGGTTAGATGCCACGTCCT
GGAATGGCCCAAAGGCTGTGACGACGACGCGGAGCTGGCAAGGAGGCTGA
GGTAATGGAGGAAGAGGACAAGGAATTCGTTTCCGACTGCTGTTGTCGCG
AAAACGTCTAGCCATGGAGCTTCGGGGTGAATTACCATCTTTTGCAGCAG
AGGAGGAGGAGGAGGAGGGCAAGGAGTTCCGGGTGGAGTGCGATACGAAA
AAGGATGGAAAGTACTGGTGGACGGCCGAAAGAACAGCAGTAGTGGGGTT
TTGGCATTTAAACCTGAGAGAATACGCAAATGGTTCTGCGTGTGAGTGCC
CAACGCAACCTTTCTACGTAGTCCTTTGCGTTGTCGGTACTGCCTGAGAG
GGCTTACCTCGAGATGGAAAGAGAATGTTGCGGCAGGGAATAAAAAGCAT
CAATCAGAACCGTCAGGGTCAGGAAAATGAGGAGTTGCAAGCGAATCTCC
ATCCAAATCGTGGCCGGCGTCCGCGTGACGTCGGATCGTACGAGGAAGGA
GACCCGAGGTGGCGAAGTCCTTGACTTGGGTGAACGAGCGAATTCAAGCC
CGGCTCGGAGCGGAGGGAGGGCTTTGAATGTAGCTTTATCTGCACAGAGC
GGGGAAAGGGGGTAAAGATATGGGTGAGCTCGTCATAAAAAGAATTCGGC
TCAGGAGAGTAAGGGCCGCTCGAGGAGAATTGATCACCGCTGCAGCACCG
GATGCGACAGCTCACACTCATCGATTGCCGCTTTTGCCGTATGAACAAGA
AGATCGCCTCTCAAACGGCCGACGTTGCTGTCGTCCCTCGTTTTGCGTAT
CGAGGTGTTTTCAAAAGCGTGCCTGCTTATTGCTGTGATGACAACCTCAA
AACCACACCGCCGATCACAAACAGACTACGGTGCAAAGGACGGGTGGGTT
CGGACAAGGGGGCAGGAGGTTAAATTCCAGCGGCACGCCCAACACCATGC
CCTCGCATGCTTTCCAGCGACAGCACCAGCACCAGCACCAGCACCAGCTA
CAGCAGCAGGAGCAACGAGAAAGTCCCCAGCCTCCGCAGGAGGCATCCCA
TTTACCTCCAGCATTGTCCTTACCTCGCGCTGCCTTCGTCTACACGCGGT
GCTACTGCGAGGAAAATGTTTATCTACTTCTGGCCAAGCTCCAAACCCTT
CTTATTTCATCAAGTTCTGGTTCACCAGGCCAGCTCTCGGCCCTCTTCAT
CTCCAACAAGATCAAAACTTGTCCAGTGTGGGGTCAACTGGCAGCAGGAG
AAGACGGCTCAAAGAATGTAGAGAGGAAGGATGAACGCGAGTACAAGGAG
ACGGGACACAAGGAACATTTCGATGGTGACGATAACGACGACAACGAGGA
GAGGGAGAGATCACCGGTCTTGTGGGACTATCACGTTGTCGCCCTCTTGG
AGACCGGCGATAGCGCTGCCTTCATCTATGACCTTGACACTCGCCTAGAA
CCTTTCCCTTGTCCGGCGTCTGAGTATGTTGCGCGGGCTTTTAGGCCTGA
CATACCCATGAAGGAGGAATACCGGCAACGTTTCCGACTAGTGCCCTTCG
TGCCCATCTTCCGCGATAGTTTCGCCTGCGACCGCTCCCACATGCGGAGA
CCCGATGGCTCTTGGAATGCACCACCGCCGGCTTATCCACCCATAAGAGG
ATCTAGGGCGGCCTCCCCAATGACCCTCCCATTATTTTGGAACGTAGACG
ATCAAGGGGAAGAAAGAATAGGGGGAGGGAGGGGGGGAGAGCTGGGGGAA
ATTTTGTCTCTCGCTGACCTACAGGCTCGCGTGGGTGCCGGGCGCGGCGG
CGAGGACGTTCTGTATCAGCGGCGATAGCAAAGGGAGAGAGAAAGCGCAC
AAAGATGACTGTAAACACGACAATGAGACATTAAATAAGAAGTGGAAATG
TAGCGAGTCTCGCGCCATAGAAATCCCAAAAAAATCTCACGCTTTGTGTG
CATAATGTCCCTGTCTGTTCATAGATTTGCTCGAACGAAGAGAGCATTGG
AAATATTTAAAAAATAAAATATATATATAATCGAGTCCCTCGTACTGCTG
TACATTGAAAATAGGAAATAACGCGATAAAAGAGT
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protein sequence of NO20G00190.1

>NO20G00190.1-protein ID=NO20G00190.1-protein|Name=NO20G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MPSHAFQRQHQHQHQHQLQQQEQRESPQPPQEASHLPPALSLPRAAFVYT
RCYCEENVYLLLAKLQTLLISSSSGSPGQLSALFISNKIKTCPVWGQLAA
GEDGSKNVERKDEREYKETGHKEHFDGDDNDDNEERERSPVLWDYHVVAL
LETGDSAAFIYDLDTRLEPFPCPASEYVARAFRPDIPMKEEYRQRFRLVP
FVPIFRDSFACDRSHMRRPDGSWNAPPPAYPPIRGSRAASPMTLPLFWNV
DDQGEERIGGGRGGELGEILSLADLQARVGAGRGGEDVLYQRR*
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mRNA from alignment at chr20:67273..70868+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00190.1 ID=NO20G00190.1|Name=NO20G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=3596bp|location=Sequence derived from alignment at chr20:67273..70868+ (Nannochloropsis oceanica)
TCACAACATAATAATCTCCCCCGCACGCCTATTGTCCCTACCCACCACGC
CCTCCTTCCCCTCCCACAGCCACCACCTCCTGCACCGTCTGAGGAAAATG
GCAAACTGCCATCTCCAAAACCCGTTCCAAAAACTTAAACTGAGCGTCTT
CGGCGATGCGGCTAAAAGACGGCAAGTGCACAAACAAGGCTGCGCTGTGG
GCATGTCCACGGACCCGACACATCTCCAAAGAATTGAAGTAAAGGTAATT
ACACACAAACCGGCCGGGATTTGAGGAAATCGAAACCTCTTCGCGGGTAT
ATCCAGGTCCTGAAGGACTCTCAGCGTGTAAGGCTCGAGCTATTGTATGA
AGCGGCAAGGTCGAAAAAAGGGAGAAGGACGTGTCAGGGTTGGCGTGGGA
GACTGCGGCTTTCCAAGGCTGGAAAGCCCGTTCATCCGGGAAATCAAACG
ACGCTTCATTGTACCCCACGCTTTCTAAACGGAAGCCTTCGATATCGTTG
CGTACGCCTAGGTGCAGGAGCAAAAGGTTGTCTTCTTGCTGGAGGCCTTG
GGTTCTCAAGGTGGTGTGAATTTGCTGCAGCTCGGTTAGGGAGCCGATGG
CGGATGTTTCGAGAATGTGGGTGGAGATTTTAATGATATCTTCCGTCTTC
TGGATCTTATGGATACGTGTGATTGATAGAAAAAAGAGGAGGAAGTTAGA
GAAGAAGGGGAGAGCGCAAAGGATAACCAAAGATAAAAGACAGTTAGTCA
GTTGAAAGGAGTGACAAATCCGTGAGAGGCAGCTTGGAAAGAGGATGTCA
ATGGAAAGAGACAGTTTACGGATATTCGAGCGGGGGGGAAATTTCACCTG
GTCGCCCAGCCGCCGGACTAGGGTCTCGGAGGGGTTAGATGCCACGTCCT
GGAATGGCCCAAAGGCTGTGACGACGACGCGGAGCTGGCAAGGAGGCTGA
GGTAATGGAGGAAGAGGACAAGGAATTCGTTTCCGACTGCTGTTGTCGCG
AAAACGTCTAGCCATGGAGCTTCGGGGTGAATTACCATCTTTTGCAGCAG
AGGAGGAGGAGGAGGAGGGCAAGGAGTTCCGGGTGGAGTGCGATACGAAA
AAGGATGGAAAGTACTGGTGGACGGCCGAAAGAACAGCAGTAGTGGGGTT
TTGGCATTTAAACCTGAGAGAATACGCAAATGGTTCTGCGTGTGAGTGCC
CAACGCAACCTTTCTACGTAGTCCTTTGCGTTGTCGGTACTGCCTGAGAG
GGCTTACCTCGAGATGGAAAGAGAATGTTGCGGCAGGGAATAAAAAGCAT
CAATCAGAACCGTCAGGGTCAGGAAAATGAGGAGTTGCAAGCGAATCTCC
ATCCAAATCGTGGCCGGCGTCCGCGTGACGTCGGATCGTACGAGGAAGGA
GACCCGAGGTGGCGAAGTCCTTGACTTGGGTGAACGAGCGAATTCAAGCC
CGGCTCGGAGCGGAGGGAGGGCTTTGAATGTAGCTTTATCTGCACAGAGC
GGGGAAAGGGGGTAAAGATATGGGTGAGCTCGTCATAAAAAGAATTCGGC
TCAGGAGAGTAAGGGCCGCTCGAGGAGAATTGATCACCGCTGCAGCACCG
GATGCGACAGCTCACACTCATCGATTGCCGCTTTTGCCGTATGAACAAGA
AGATCGCCTCTCAAACGGCCGACGTTGCTGTCGTCCCTCGTTTTGCGTAT
CGAGGTGTTTTCAAAAGCGTGCCTGCTTATTGCTGTGATGACAACCTCAA
AACCACACCGCCGATCACAAACAGACTACGGTGCAAAGGACGGGTGGGTT
CGGACAAGGGGGCAGGAGGTTAAATTCCAGCGGCACGCCCAACACCATGC
CCTCGCATGCTTTCCAGCGACAGCACCAGCACCAGCACCAGCACCAGCTA
CAGCAGCAGGAGCAACGAGAAAGTCCCCAGCCTCCGCAGGAGGCATCCCA
TTTACCTCCAGCATTGTCCTTACCTCGCGCTGCCTTCGTCTACACGCGGT
GCTACTGCGAGGTGAGATAGAGTGAGAAGATTGTAATCCGACAGAAGCAG
GACAACGACAACAGGCGAGACCCATGGCACAGTATATCAGCACAAAGACG
CCTGTACTCTCATGCCCATCCCCGCCGTCCATCCCTTTCTTTCAGGAAAA
TGTTTATCTACTTCTGGCCAAGCTCCAAACCCTTCTTATTTCATCAAGTT
CTGGTTCACCAGGCCAGCTCTCGGCCCTCTTCATCTCCAACAAGATCAAA
ACTTGTCCAGTGTGGGGTCAACTGGCAGCAGGAGAAGACGGCTCAAAGAA
TGTAGAGAGGAAGGATGAACGCGAGTACAAGGAGACGGGACACAAGGAAC
ATTTCGATGGTGACGATAACGACGACAACGAGGAGAGGGAGAGATCACCG
GTCTTGTGGGACTATCACGGTGAGCTCGTGATGCAATGGTCGAGGAAAAT
GAAGAAAGGGGCACAACAAGCTACATTCTTTGCAAACTACATCGTCGAGA
ATTTTTCGAGGCATCTAGAAAATTCTGACCGTCTCCCTCCCTGCTTCCCT
CCCTCCTCTAGTTGTCGCCCTCTTGGAGACCGGCGATAGCGCTGCCTTCA
TCTATGACCTTGACACTCGCCTAGAACCTTTCCCTTGTCCGGCGTCTGAG
TATGTTGCGCGGGCTTTTAGGCCTGACATACCCATGAAGGAGGAATACCG
GCAGTGAGTGGGCACGTAGGGAGGGAGGAAGGGCGGAAGGAATGGCGGGA
GAGAGTTTCCTATTGTGGTGTATTTCACACATTAACGCCTGGACTCATTT
CTACTTTCTTTCCTCCTCCTGCATCTTTATCTGAAGACGTTTCCGACTAG
TGCCCTTCGTGCCCATCTTCCGCGATAGTTTCGCCTGCGACCGCTCCCAC
ATGCGGAGACCCGATGGCTCTTGGAATGCACCACCGCCGGCTTATCCACC
CATAAGGTACGTTAAAAGTGGTGTTGAGGAGGGCGAAATGAAGGGGGGAG
AAAGAGTGGGATTGCAAGGAAAAAGGAGAAAGAAAAAGAAATAAAGGTAC
GCATATTCGTTCATAACTCTATCGCGTCATCGACGAGAGGTCTTTTCCTC
ACGCCAAGCCTCGCTTATTCTTCCTCTTCTCCCTTCCTCCATCTTACGTG
AATTACAGAGGATCTAGGGCGGCCTCCCCAATGACCCTCCCATTATTTTG
GAACGTAGACGATCAAGGGGAAGAAAGAATAGGGGGAGGGAGGGGGGGAG
AGCTGGGGGAAATTTTGTCTCTCGCTGACCTACAGGCTCGCGTGGGTGCC
GGGCGCGGCGGCGAGGACGTTCTGTATCAGCGGCGATAGCAAAGGGAGAG
AGAAAGCGCACAAAGATGACTGTAAACACGACAATGAGACATTAAATAAG
AAGTGGAAATGTAGCGAGTCTCGCGCCATAGAAATCCCAAAAAAATCTCA
CGCTTTGTGTGCATAATGTCCCTGTCTGTTCATAGATTTGCTCGAACGAA
GAGAGCATTGGAAATATTTAAAAAATAAAATATATATATAATCGAGTCCC
TCGTACTGCTGTACATTGAAAATAGGAAATAACGCGATAAAAGAGT
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Coding sequence (CDS) from alignment at chr20:67273..70868+

>NO20G00190.1 ID=NO20G00190.1|Name=NO20G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr20:67273..70868+ (Nannochloropsis oceanica)
ATGCCCTCGCATGCTTTCCAGCGACAGCACCAGCACCAGCACCAGCACCA
GCTACAGCAGCAGGAGCAACGAGAAAGTCCCCAGCCTCCGCAGGAGGCAT
CCCATTTACCTCCAGCATTGTCCTTACCTCGCGCTGCCTTCGTCTACACG
CGGTGCTACTGCGAGGAAAATGTTTATCTACTTCTGGCCAAGCTCCAAAC
CCTTCTTATTTCATCAAGTTCTGGTTCACCAGGCCAGCTCTCGGCCCTCT
TCATCTCCAACAAGATCAAAACTTGTCCAGTGTGGGGTCAACTGGCAGCA
GGAGAAGACGGCTCAAAGAATGTAGAGAGGAAGGATGAACGCGAGTACAA
GGAGACGGGACACAAGGAACATTTCGATGGTGACGATAACGACGACAACG
AGGAGAGGGAGAGATCACCGGTCTTGTGGGACTATCACGTTGTCGCCCTC
TTGGAGACCGGCGATAGCGCTGCCTTCATCTATGACCTTGACACTCGCCT
AGAACCTTTCCCTTGTCCGGCGTCTGAGTATGTTGCGCGGGCTTTTAGGC
CTGACATACCCATGAAGGAGGAATACCGGCAACGTTTCCGACTAGTGCCC
TTCGTGCCCATCTTCCGCGATAGTTTCGCCTGCGACCGCTCCCACATGCG
GAGACCCGATGGCTCTTGGAATGCACCACCGCCGGCTTATCCACCCATAA
GAGGATCTAGGGCGGCCTCCCCAATGACCCTCCCATTATTTTGGAACGTA
GACGATCAAGGGGAAGAAAGAATAGGGGGAGGGAGGGGGGGAGAGCTGGG
GGAAATTTTGTCTCTCGCTGACCTACAGGCTCGCGTGGGTGCCGGGCGCG
GCGGCGAGGACGTTCTGTATCAGCGGCGATAG
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Synonyms
Publications