NO20G00100.1, NO20G00100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G00100.1
Unique NameNO20G00100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length618
Alignment locationchr20:33465..34704 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:33465..34704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO20G00100.1 vs.
Match: EWM22227.1 (hypothetical protein Naga_100312g2 [Nannochloropsis gaditana])

HSP 1 Score: 177.2 bits (448), Expect = 5.100e-41
Identity = 104/192 (54.17%), Postives = 130/192 (67.71%), Query Frame = 0 
Query:    6 APHGPDLVVVQLDDDLPTQGEGSKGGGAAELQQQEQDPISMSQTVAGLLETGNKPVKSTLRGFKVAGTLLKVCTVCLIACAGLLFWTSTTVNSKTLVGVCIAIGIFCIFGSCFSCYGVLTLAGYRSMLQRVNRGLEGGAATVTRASRGESAADIARSIVAETGVVGRVGGRVGGRVVQVLGIGGNNAERATR 198
            A   P +VV+ L      Q    +  GA E ++QE+  ISMSQT+AG L T NKPVK+TL GF+VAG LLK+ T+ L+A AGLLFW+ST   S  +V VCIAIG+FC+ GS  SCYGVLTLAGYR+ML+RV+RGLE G   VTR+  GES   +A  +  E GV+    G VGGRVVQ+LG+GGN    A +
Sbjct:    3 ASQKPAMVVIDLGKPAVIQ----EAAGAGEGKEQEEQ-ISMSQTMAGYLHTTNKPVKATLWGFRVAGVLLKLTTLLLLASAGLLFWSSTMSRSHVIVSVCIAIGLFCLLGSILSCYGVLTLAGYRAMLKRVSRGLERGHHVVTRSGEGESVGSLAGELAGEAGVL----GTVGGRVVQMLGVGGNGGAGAEK 185
The following BLAST results are available for this feature:
BLAST of NO20G00100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22227.15.100e-4154.17hypothetical protein Naga_100312g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00100NO20G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G00100.1NO20G00100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G00100.1.cds1NO20G00100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00100.1.cds2NO20G00100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00100.1.cds3NO20G00100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO20G00100.1.cds4NO20G00100.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G00100.1 ID=NO20G00100.1|Name=NO20G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=618bp
CAACAGGCAGCCCCTCGACGAGTGATGAGTGCCCCTTCCGCGCCTCACGG
ACCCGATCTGGTTGTGGTGCAATTAGATGATGATCTGCCTACACAAGGGG
AAGGGAGCAAAGGAGGAGGGGCAGCCGAGCTCCAGCAGCAGGAGCAAGAT
CCTATAAGCATGAGCCAGACTGTGGCAGGTTTGTTAGAGACTGGGAACAA
GCCTGTCAAGAGCACGCTGCGGGGGTTTAAGGTAGCGGGTACTCTGCTCA
AGGTCTGCACCGTCTGCCTGATCGCGTGTGCCGGCCTCCTCTTTTGGACC
TCCACCACAGTAAACAGCAAGACCTTGGTGGGCGTGTGCATCGCCATTGG
GATCTTCTGCATCTTCGGAAGCTGCTTCTCGTGTTACGGCGTTTTGACGC
TGGCCGGGTACAGGTCGATGCTGCAGCGGGTCAACCGCGGGCTGGAAGGA
GGCGCGGCCACCGTCACTCGTGCCAGCCGCGGGGAGAGTGCAGCAGACAT
CGCGAGGAGCATCGTGGCAGAGACAGGCGTGGTGGGGAGGGTGGGAGGGA
GGGTGGGAGGGAGGGTGGTGCAGGTGTTGGGGATAGGCGGGAATAATGCC
GAGCGCGCGACGAGGTAG
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protein sequence of NO20G00100.1

>NO20G00100.1-protein ID=NO20G00100.1-protein|Name=NO20G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MSAPSAPHGPDLVVVQLDDDLPTQGEGSKGGGAAELQQQEQDPISMSQTV
AGLLETGNKPVKSTLRGFKVAGTLLKVCTVCLIACAGLLFWTSTTVNSKT
LVGVCIAIGIFCIFGSCFSCYGVLTLAGYRSMLQRVNRGLEGGAATVTRA
SRGESAADIARSIVAETGVVGRVGGRVGGRVVQVLGIGGNNAERATR*
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mRNA from alignment at chr20:33465..34704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G00100.1 ID=NO20G00100.1|Name=NO20G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1240bp|location=Sequence derived from alignment at chr20:33465..34704+ (Nannochloropsis oceanica)
CAACAGGCAGCCCCTCGACGAGTGATGAGTGCCCCTTCCGCGCCTCACGG
ACCCGATCTGGTTGTGGTGCAATTAGATGATGATCTGCCTACACAAGGGG
AAGGGAGCAAAGGAGGAGGGGCAGCCGAGCTCCAGCAGCAGGAGCAAGAT
CCTATAAGCATGAGCCAGACTGTGGCAGGTTTGTTAGAGACTGGGAACAA
GCCTGTCAAGAGCACGCTGCGGGGGTTTAAGGTAGCGGGTAAGGCGAGGG
GAGGGAGAGAAGTGAGGGAGGGGGGAGGATGGGAAGGGATGAAGGGGGTC
AAGCACTGAGGCAAAGGAGGGTGGGCGCTTGCCACGCTCGACCAAACATT
CAAAGACCTTTGCTCAGCCATCATTCAAGTTGATCGCTCCATTTCTCTCC
AGGTACTCTGCTCAAGGTCTGCACCGTCTGCCTGATCGCGTGTGCCGGCC
TCCTCTTTTGGACCTCCACCACAGTAAACAGCAAGACCTTGGTGGGCGTG
TGCATCGCCATTGGGATCTTCTGCATCTTCGGAAGCTGCTTCTCGGTGCG
TTTAGTAGGAGACGGCCTGGTTTTTCTGTGGGCTTCTTTTTCTTATCTTA
CGAACGCTCACTTGTGTGCCTGTCTCTCCTTGCCTCGCTCTCTCCTTCCT
TCTTTGTCGAAACCGTCCCGTCTAACCCTCACGCCCTCTTATGCCCCTCC
CTTTTTTTCTCTCTTCCTGGCGTCTTTGGTATCTCATAGTGTTACGGCGT
TTTGACGCTGGCCGGGTACAGGTCGATGCTGCAGCGGGTCAACCGCGGGC
TGGAAGGAGGTAGGCAGGGAGGGAGGAAGGGAGTTGGGAAGCGGGAGGGA
ATGGAAGGAGGGGAGAGGTGAACGGCGAGAAGGAGGACAGGATGCTTGGG
ACAAAGGGAGAAAGGGCAACATTAAGAAAGCCGGTTCTTTCGTCGAGAGA
CTGGAAGGAAGGAAGGACGGACGGAAGGAAGGGGGCTTCCTTCTTGTCTT
CTGTTTCGCGCCATGTTTCTCACCTGTTCCCTCCCTTCCTCTTCCTTTCT
CCCTTTCTCTCTCCCTCTCTTAGGCGCGGCCACCGTCACTCGTGCCAGCC
GCGGGGAGAGTGCAGCAGACATCGCGAGGAGCATCGTGGCAGAGACAGGC
GTGGTGGGGAGGGTGGGAGGGAGGGTGGGAGGGAGGGTGGTGCAGGTGTT
GGGGATAGGCGGGAATAATGCCGAGCGCGCGACGAGGTAG
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Coding sequence (CDS) from alignment at chr20:33465..34704+

>NO20G00100.1 ID=NO20G00100.1|Name=NO20G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr20:33465..34704+ (Nannochloropsis oceanica)
ATGAGTGCCCCTTCCGCGCCTCACGGACCCGATCTGGTTGTGGTGCAATT
AGATGATGATCTGCCTACACAAGGGGAAGGGAGCAAAGGAGGAGGGGCAG
CCGAGCTCCAGCAGCAGGAGCAAGATCCTATAAGCATGAGCCAGACTGTG
GCAGGTTTGTTAGAGACTGGGAACAAGCCTGTCAAGAGCACGCTGCGGGG
GTTTAAGGTAGCGGGTACTCTGCTCAAGGTCTGCACCGTCTGCCTGATCG
CGTGTGCCGGCCTCCTCTTTTGGACCTCCACCACAGTAAACAGCAAGACC
TTGGTGGGCGTGTGCATCGCCATTGGGATCTTCTGCATCTTCGGAAGCTG
CTTCTCGTGTTACGGCGTTTTGACGCTGGCCGGGTACAGGTCGATGCTGC
AGCGGGTCAACCGCGGGCTGGAAGGAGGCGCGGCCACCGTCACTCGTGCC
AGCCGCGGGGAGAGTGCAGCAGACATCGCGAGGAGCATCGTGGCAGAGAC
AGGCGTGGTGGGGAGGGTGGGAGGGAGGGTGGGAGGGAGGGTGGTGCAGG
TGTTGGGGATAGGCGGGAATAATGCCGAGCGCGCGACGAGGTAG
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Synonyms
Publications