NO02G02310.1, NO02G02310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02310.1
Unique NameNO02G02310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length771
Alignment locationchr2:648657..649427 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:648657..649427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02310.1 vs.
Match: EWM30428.1 (putative alpha-ketoglutarate-dependent dioxygenase abh7 [Nannochloropsis gaditana])

HSP 1 Score: 290.8 bits (743), Expect = 4.100e-75
Identity = 149/205 (72.68%), Postives = 165/205 (80.49%), Query Frame = 0 
Query:   49 LDFSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSVIENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLANDGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLRPRSLYILSGEARYKYAHEILAPSP-GGERWVDGVVVARGRRLSLIFRDEKVQQ 253
            +DFSN      D+SS++VLPDVIT EEEARLVAELE N+RRRRYVANHWDSVIE YREVEKR W+DP N  +A RIK++IL TL + +   FLPVHVIDLA DGFIKPHVDS KFSG +V GLSLCS AIMQLKGD +QG +P SIVRLLLRPRSLYIL G ARY+YAHEILA  P G ERWVDG  V R RRLSLIFRDE+  Q
Sbjct:   70 IDFSNCRDNTLDSSSIRVLPDVITIEEEARLVAELEGNMRRRRYVANHWDSVIERYREVEKRAWIDPLNAKIAQRIKSVILQTLNKSLATRFLPVHVIDLAEDGFIKPHVDSSKFSGGLVCGLSLCSSAIMQLKGDVEQGQNPDSIVRLLLRPRSLYILCGNARYRYAHEILATRPEGEERWVDGRRVKRSRRLSLIFRDEREDQ 274
The following BLAST results are available for this feature:
BLAST of NO02G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30428.14.100e-7572.68putative alpha-ketoglutarate-dependent dioxygenase... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02310NO02G02310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02310.1NO02G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02310.1.cds1NO02G02310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02310.1 ID=NO02G02310.1|Name=NO02G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=771bp
ATGTCCCTCCTCGTTGTCTCGGCCGCCTGTCGCCTAGTCCTATCACACTG
TCGCAAGCGATCAAGGCCACCATTGTCCTGCCCCGTCATTTGTCACCTCA
GCACCTCCTCAGCTGTCGCCTCCGTCGAGACCTCGCACTCCCTTCTCGAC
TTCTCCAACATCGGCCCTCCGGGTTTTGACACGTCCTCCGTGCAGGTCTT
GCCCGATGTCATCACGCCTGAAGAAGAGGCCCGACTTGTGGCCGAGTTGG
AGGAGAATGTGCGGCGGCGTCGATATGTCGCTAACCATTGGGACTCTGTT
ATTGAAAATTATCGGGAGGTAGAAAAACGAGGATGGCTTGACCCCGGGAA
CAAAGCGCTGGCCGACCGGATCAAGAACCTCATTCTCCACACACTGCAGC
GCCCTATGACATTGCCTTTCCTCCCGGTGCATGTGATTGATTTAGCCAAC
GATGGATTTATCAAGCCTCATGTTGATAGTGTAAAATTTAGTGGCGACAT
TGTGAGTGGCCTCTCCCTGTGCTCGCCCGCCATCATGCAACTCAAAGGCG
ACAAAGACCAAGGCATGGACCCCTTATCTATCGTTCGCTTGTTGCTACGG
CCTCGTTCGTTGTATATTTTAAGTGGGGAAGCAAGATATAAATACGCACA
CGAGATCTTGGCGCCTTCGCCCGGGGGGGAAAGGTGGGTGGATGGGGTGG
TGGTGGCACGTGGGCGACGATTATCTTTGATATTTAGGGATGAAAAGGTG
CAGCAGCAAGAGGAGATTTGA
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protein sequence of NO02G02310.1

>NO02G02310.1-protein ID=NO02G02310.1-protein|Name=NO02G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MSLLVVSAACRLVLSHCRKRSRPPLSCPVICHLSTSSAVASVETSHSLLD
FSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSV
IENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLAN
DGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLR
PRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKV
QQQEEI*
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mRNA from alignment at chr2:648657..649427-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02310.1 ID=NO02G02310.1|Name=NO02G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=771bp|location=Sequence derived from alignment at chr2:648657..649427- (Nannochloropsis oceanica)
ATGTCCCTCCTCGTTGTCTCGGCCGCCTGTCGCCTAGTCCTATCACACTG
TCGCAAGCGATCAAGGCCACCATTGTCCTGCCCCGTCATTTGTCACCTCA
GCACCTCCTCAGCTGTCGCCTCCGTCGAGACCTCGCACTCCCTTCTCGAC
TTCTCCAACATCGGCCCTCCGGGTTTTGACACGTCCTCCGTGCAGGTCTT
GCCCGATGTCATCACGCCTGAAGAAGAGGCCCGACTTGTGGCCGAGTTGG
AGGAGAATGTGCGGCGGCGTCGATATGTCGCTAACCATTGGGACTCTGTT
ATTGAAAATTATCGGGAGGTAGAAAAACGAGGATGGCTTGACCCCGGGAA
CAAAGCGCTGGCCGACCGGATCAAGAACCTCATTCTCCACACACTGCAGC
GCCCTATGACATTGCCTTTCCTCCCGGTGCATGTGATTGATTTAGCCAAC
GATGGATTTATCAAGCCTCATGTTGATAGTGTAAAATTTAGTGGCGACAT
TGTGAGTGGCCTCTCCCTGTGCTCGCCCGCCATCATGCAACTCAAAGGCG
ACAAAGACCAAGGCATGGACCCCTTATCTATCGTTCGCTTGTTGCTACGG
CCTCGTTCGTTGTATATTTTAAGTGGGGAAGCAAGATATAAATACGCACA
CGAGATCTTGGCGCCTTCGCCCGGGGGGGAAAGGTGGGTGGATGGGGTGG
TGGTGGCACGTGGGCGACGATTATCTTTGATATTTAGGGATGAAAAGGTG
CAGCAGCAAGAGGAGATTTGA
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Coding sequence (CDS) from alignment at chr2:648657..649427-

>NO02G02310.1 ID=NO02G02310.1|Name=NO02G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at chr2:648657..649427- (Nannochloropsis oceanica)
ATGTCCCTCCTCGTTGTCTCGGCCGCCTGTCGCCTAGTCCTATCACACTG
TCGCAAGCGATCAAGGCCACCATTGTCCTGCCCCGTCATTTGTCACCTCA
GCACCTCCTCAGCTGTCGCCTCCGTCGAGACCTCGCACTCCCTTCTCGAC
TTCTCCAACATCGGCCCTCCGGGTTTTGACACGTCCTCCGTGCAGGTCTT
GCCCGATGTCATCACGCCTGAAGAAGAGGCCCGACTTGTGGCCGAGTTGG
AGGAGAATGTGCGGCGGCGTCGATATGTCGCTAACCATTGGGACTCTGTT
ATTGAAAATTATCGGGAGGTAGAAAAACGAGGATGGCTTGACCCCGGGAA
CAAAGCGCTGGCCGACCGGATCAAGAACCTCATTCTCCACACACTGCAGC
GCCCTATGACATTGCCTTTCCTCCCGGTGCATGTGATTGATTTAGCCAAC
GATGGATTTATCAAGCCTCATGTTGATAGTGTAAAATTTAGTGGCGACAT
TGTGAGTGGCCTCTCCCTGTGCTCGCCCGCCATCATGCAACTCAAAGGCG
ACAAAGACCAAGGCATGGACCCCTTATCTATCGTTCGCTTGTTGCTACGG
CCTCGTTCGTTGTATATTTTAAGTGGGGAAGCAAGATATAAATACGCACA
CGAGATCTTGGCGCCTTCGCCCGGGGGGGAAAGGTGGGTGGATGGGGTGG
TGGTGGCACGTGGGCGACGATTATCTTTGATATTTAGGGATGAAAAGGTG
CAGCAGCAAGAGGAGATTTGA
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Synonyms
Publications