NO19G00900.2, NO19G00900.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO19G00900.2
Unique NameNO19G00900.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1872
Alignment locationchr19:305382..307519 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:305382..307519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO19G00900.2 vs.
Match: EWM23593.1 (nuclear y ccaat-box binding factor c subunit nf yc [Nannochloropsis gaditana])

HSP 1 Score: 119.4 bits (298), Expect = 2.300e-23
Identity = 110/256 (42.97%), Postives = 152/256 (59.38%), Query Frame = 0 
Query:   72 DEMEDFKAKVRKSDEEEEENKQVEEDE--GDMGENQHLSEFDGEAAAAAAAAAEEEEEEEEEEEEEEEEANETDGRIMATATSPSEAEEEGEEGREEEEENDENEDSQAVSDRFLLSQTLKQAKSAWMLYTSEARAALKKAQPSLKVTEQLKIMSEQWKSLSRNARQPFLDRAAADKERYRHDKQQYAEAELREKTRRAKMHKKEGGSEGGRD--RRRELSEEMLFPLARIRRVMKLDPEVKTISKEAAMLVAKAT 324
            D   D K  + ++ ++  ++ +VE +E  G+ G++  + +    + A     A E        +  + +A E D           E E++ EE  EEE E +  ED    +DR L +     AKSAWML+T+EAR  LK+ QPSL+VTEQ+KIMSEQWK+L   AR+PFL+RAAADKERY+ +K       LR +  +      +GG E  RD    R L++EMLFPLARIR++MKLDPEVKT+SKEAA+LV KAT
Sbjct:   51 DTSNDQKGVLTRAFDDRYQSTKVEMEERRGENGDDCVVKDGPVPSPAPCCELAAENATPSSPCDVNDGDAYEKD--------IEEEREQQEEEEEEEENEGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEK-------LRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKAT 291
The following BLAST results are available for this feature:
BLAST of NO19G00900.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23593.12.300e-2342.97nuclear y ccaat-box binding factor c subunit nf yc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00900NO19G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO19G00900.2NO19G00900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO19G00900.2.cds1NO19G00900.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00900.2.cds2NO19G00900.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO19G00900.2.cds3NO19G00900.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO19G00900.2 ID=NO19G00900.2|Name=NO19G00900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp
ATGCCAATCGTTGAAGGAGAGGACAAGGAGGAAGCCGAGGCGAATGAAGA
AGAGAACAGTAAGCAGGAACAGCAACCAGAGCGTCAGGAGGACGAGGGCG
ACAATGGTGTTGACGCGGAGAGCGAGAGAGCACACTTAGCCAGTGCGACT
GCCCTAAATACTGCTGATCGTAGAGATGGAGACGAGGGTGAGGCCACACT
AGGCAGTGATGTCGATGAGATGGAAGATTTTAAGGCCAAGGTGAGGAAGT
CCGACGAAGAGGAGGAAGAGAACAAGCAGGTGGAAGAGGACGAGGGAGAT
ATGGGAGAAAATCAGCACCTATCGGAGTTTGATGGAGAAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGCAAACGAAACAGATGGGAGGATCATGGCCACTGCC
ACTTCTCCGAGCGAGGCAGAGGAGGAGGGCGAGGAAGGGAGGGAAGAGGA
GGAGGAGAATGACGAGAACGAGGACTCCCAGGCGGTGTCGGATAGGTTCT
TACTGAGCCAAACGTTGAAGCAGGCAAAGTCGGCATGGATGCTGTACACG
AGTGAGGCGCGCGCAGCGTTGAAGAAGGCCCAACCCTCTCTTAAAGTCAC
GGAGCAACTCAAGATAATGTCCGAGCAATGGAAATCCCTCTCTCGCAACG
CCCGACAGCCTTTCCTGGACCGTGCGGCCGCAGACAAGGAACGTTATCGG
CACGACAAACAGCAATATGCCGAAGCCGAGCTTCGCGAGAAAACACGTCG
GGCCAAGATGCACAAGAAGGAGGGAGGGAGCGAGGGAGGGAGGGATCGAA
GGAGGGAGCTGAGCGAGGAGATGTTGTTCCCCTTGGCAAGGATTAGACGA
GTCATGAAACTCGATCCGGAAGTAAAGACTATCTCGAAGGAGGCGGCGAT
GCTAGTGGCCAAAGCGACGGTAACCAACTCCTCCCTCCTTCCAACCCTCC
TTCCGCCTTCTTTCTTTGAACTCAGCCTCCTTCCCTTCCTCGCCCCCTCC
CTCCCTCCACAAGCTTTTCGAGCTAATGGGATTTAGGGAGGAGTCAAATC
CACAATCCAGACGGATATTAATGATTTAGCAGAAGTATAAGTATTTTGCT
ATCTGCTCATTCTTGTTCCCTTTCTCCCTCCCCCTTCTTTTTTAAAAATC
ATATGTATAACAGGAACTCTTCCTTGATCTGCTTGGAGAAGAAGCGCATA
AGGCTTCAGGAAAGAAGAAAACCCTTAAGGCTGATGACGTTACTGCAGCG
ATGCGTCGTTATGGCCCATTTTGTTTTCTACGACCCGATTTTCCCATGGG
AGGTAGAGGAGGAGGAGGGGGAGGGAAGGAAAGAGAGGTGAAGAAAGGGA
GTGAGGCAGGAGGGGGAGGGGAAGGGAATATGAATGCGATAGCCAAGCTG
GCAGCGGCGGACCGGAGGAAGATGAAGGAAAGGGCATGGGAAGGAGAAGA
GGGAAAGGGAGAGGGGGAGGAGGAGGGCGGGAAGGGATTGGAGGAGGGGA
AAGAGGCGGGAGCGGCAGGCAAGCAGAGAGGGCGTAAGTCTAAGGGGAAG
GGTACAGCGGCGCATGTGGCCGTGGCCGAAGGAAAGGCGAATATCTCGAG
CTTTTTTGGGGAAAAAAAGGCGATGGAAGCGTCAGCCTTAAGTGGCAGTG
AGAATAATTAGACATTCATGGGCGGGTAGGGGAGGTCGAGCAAAAGGGTG
AAAAAGCAAAAACCAAAAGGAGCGACACTCTTTATTGACTGGTTGGTACG
ATTTGCCTTCACAAAAAAGAAATACACATGTGTAAAGTATATACATTTAT
ACATATAAGCAAACGATCATCG
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protein sequence of NO19G00900.2

>NO19G00900.2-protein ID=NO19G00900.2-protein|Name=NO19G00900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MPIVEGEDKEEAEANEEENSKQEQQPERQEDEGDNGVDAESERAHLASAT
ALNTADRRDGDEGEATLGSDVDEMEDFKAKVRKSDEEEEENKQVEEDEGD
MGENQHLSEFDGEAAAAAAAAAEEEEEEEEEEEEEEEEANETDGRIMATA
TSPSEAEEEGEEGREEEEENDENEDSQAVSDRFLLSQTLKQAKSAWMLYT
SEARAALKKAQPSLKVTEQLKIMSEQWKSLSRNARQPFLDRAAADKERYR
HDKQQYAEAELREKTRRAKMHKKEGGSEGGRDRRRELSEEMLFPLARIRR
VMKLDPEVKTISKEAAMLVAKATVTNSSLLPTLLPPSFFELSLLPFLAPS
LPPQAFRANGI*
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mRNA from alignment at chr19:305382..307519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO19G00900.2 ID=NO19G00900.2|Name=NO19G00900.2|organism=Nannochloropsis oceanica|type=mRNA|length=2138bp|location=Sequence derived from alignment at chr19:305382..307519+ (Nannochloropsis oceanica)
ATGCCAATCGTTGAAGGAGAGGACAAGGAGGAAGCCGAGGCGAATGAAGA
AGAGAACAGTAAGCAGGAACAGCAACCAGAGCGTCAGGAGGACGAGGGCG
ACAATGGTGTTGACGCGGAGAGCGAGAGAGGTGAATGAAGAGGCGGGTGG
AGGCGAGGGTGGGCGAGGGTGGGCGAGGCCTGGTGGAGGGTGAGAAGGAA
GGGGCACTCACTCAGCCCTCCGTGCTTTTTTTCTACGCGCATCATCCACT
CACGCACATTCCGTACAGCACACTTAGCCAGTGCGACTGCCCTAAATACT
GCTGATCGTAGAGATGGAGACGAGGGTGAGGCCACACTAGGCAGTGATGT
CGATGAGATGGAAGATTTTAAGGCCAAGGTGAGGAAGTCCGACGAAGAGG
AGGAAGAGAACAAGCAGGTGGAAGAGGACGAGGGAGATATGGGAGAAAAT
CAGCACCTATCGGAGTTTGATGGAGAAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGCAAACGAAACAGATGGGAGGATCATGGCCACTGCCACTTCTCCGAGC
GAGGCAGAGGAGGAGGGCGAGGAAGGGAGGGAAGAGGAGGAGGAGAATGA
CGAGAACGAGGACTCCCAGGCGGTGTCGGATAGGTTCTTACTGAGCCAAA
CGTTGAAGCAGGCAAAGTCGGCATGGATGCTGTACACGAGTGAGGCGCGC
GCAGCGTTGAAGAAGGTGAGTGAGCGAGGGTGGGAGGAAATGAAAGAGGG
AGGGAGGTTTGGCCTTTACCCTTTTCCCTTTTGTATTTATCCGTTCATAT
TTTTCATTCATCAATTTGATAAATTAATCGAATATTCACACAGGCCCAAC
CCTCTCTTAAAGTCACGGAGCAACTCAAGATAATGTCCGAGCAATGGAAA
TCCCTCTCTCGCAACGCCCGACAGCCTTTCCTGGACCGTGCGGCCGCAGA
CAAGGAACGTTATCGGCACGACAAACAGCAATATGCCGAAGCCGAGCTTC
GCGAGAAAACACGTCGGGCCAAGATGCACAAGAAGGAGGGAGGGAGCGAG
GGAGGGAGGGATCGAAGGAGGGAGCTGAGCGAGGAGATGTTGTTCCCCTT
GGCAAGGATTAGACGAGTCATGAAACTCGATCCGGAAGTAAAGACTATCT
CGAAGGAGGCGGCGATGCTAGTGGCCAAAGCGACGGTAACCAACTCCTCC
CTCCTTCCAACCCTCCTTCCGCCTTCTTTCTTTGAACTCAGCCTCCTTCC
CTTCCTCGCCCCCTCCCTCCCTCCACAAGCTTTTCGAGCTAATGGGATTT
AGGGAGGAGTCAAATCCACAATCCAGACGGATATTAATGATTTAGCAGAA
GTATAAGTATTTTGCTATCTGCTCATTCTTGTTCCCTTTCTCCCTCCCCC
TTCTTTTTTAAAAATCATATGTATAACAGGAACTCTTCCTTGATCTGCTT
GGAGAAGAAGCGCATAAGGCTTCAGGAAAGAAGAAAACCCTTAAGGCTGA
TGACGTTACTGCAGCGATGCGTCGTTATGGCCCATTTTGTTTTCTACGAC
CCGATTTTCCCATGGGAGGTAGAGGAGGAGGAGGGGGAGGGAAGGAAAGA
GAGGTGAAGAAAGGGAGTGAGGCAGGAGGGGGAGGGGAAGGGAATATGAA
TGCGATAGCCAAGCTGGCAGCGGCGGACCGGAGGAAGATGAAGGAAAGGG
CATGGGAAGGAGAAGAGGGAAAGGGAGAGGGGGAGGAGGAGGGCGGGAAG
GGATTGGAGGAGGGGAAAGAGGCGGGAGCGGCAGGCAAGCAGAGAGGGCG
TAAGTCTAAGGGGAAGGGTACAGCGGCGCATGTGGCCGTGGCCGAAGGAA
AGGCGAATATCTCGAGCTTTTTTGGGGAAAAAAAGGCGATGGAAGCGTCA
GCCTTAAGTGGCAGTGAGAATAATTAGACATTCATGGGCGGGTAGGGGAG
GTCGAGCAAAAGGGTGAAAAAGCAAAAACCAAAAGGAGCGACACTCTTTA
TTGACTGGTTGGTACGATTTGCCTTCACAAAAAAGAAATACACATGTGTA
AAGTATATACATTTATACATATAAGCAAACGATCATCG
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Coding sequence (CDS) from alignment at chr19:305382..307519+

>NO19G00900.2 ID=NO19G00900.2|Name=NO19G00900.2|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at chr19:305382..307519+ (Nannochloropsis oceanica)
ATGCCAATCGTTGAAGGAGAGGACAAGGAGGAAGCCGAGGCGAATGAAGA
AGAGAACAGTAAGCAGGAACAGCAACCAGAGCGTCAGGAGGACGAGGGCG
ACAATGGTGTTGACGCGGAGAGCGAGAGAGCACACTTAGCCAGTGCGACT
GCCCTAAATACTGCTGATCGTAGAGATGGAGACGAGGGTGAGGCCACACT
AGGCAGTGATGTCGATGAGATGGAAGATTTTAAGGCCAAGGTGAGGAAGT
CCGACGAAGAGGAGGAAGAGAACAAGCAGGTGGAAGAGGACGAGGGAGAT
ATGGGAGAAAATCAGCACCTATCGGAGTTTGATGGAGAAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGCAAACGAAACAGATGGGAGGATCATGGCCACTGCC
ACTTCTCCGAGCGAGGCAGAGGAGGAGGGCGAGGAAGGGAGGGAAGAGGA
GGAGGAGAATGACGAGAACGAGGACTCCCAGGCGGTGTCGGATAGGTTCT
TACTGAGCCAAACGTTGAAGCAGGCAAAGTCGGCATGGATGCTGTACACG
AGTGAGGCGCGCGCAGCGTTGAAGAAGGCCCAACCCTCTCTTAAAGTCAC
GGAGCAACTCAAGATAATGTCCGAGCAATGGAAATCCCTCTCTCGCAACG
CCCGACAGCCTTTCCTGGACCGTGCGGCCGCAGACAAGGAACGTTATCGG
CACGACAAACAGCAATATGCCGAAGCCGAGCTTCGCGAGAAAACACGTCG
GGCCAAGATGCACAAGAAGGAGGGAGGGAGCGAGGGAGGGAGGGATCGAA
GGAGGGAGCTGAGCGAGGAGATGTTGTTCCCCTTGGCAAGGATTAGACGA
GTCATGAAACTCGATCCGGAAGTAAAGACTATCTCGAAGGAGGCGGCGAT
GCTAGTGGCCAAAGCGACGGTAACCAACTCCTCCCTCCTTCCAACCCTCC
TTCCGCCTTCTTTCTTTGAACTCAGCCTCCTTCCCTTCCTCGCCCCCTCC
CTCCCTCCACAAGCTTTTCGAGCTAATGGGATTTAG
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Synonyms
Publications