NO19G00580.3, NO19G00580.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G00580.3
Unique Name	NO19G00580.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3493
Alignment location	chr19:223548..228300 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:223548..228300 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO19G00580.3 vs.
Match: EWM23563.1 (PDZ domain protein [Nannochloropsis gaditana])

HSP 1 Score: 551.6 bits (1420), Expect = 5.600e-153
Identity = 356/662 (53.78%), Postives = 423/662 (63.90%), Query Frame = 0

Query:  495 LMDHMSDLLGMLNEAVRTSWPLLSRLTGLKLASLPPYTAADAAAVAAAARLAALRQPPETQLARA--LPVEKEEGGRDGRTEERKEGQIIALEIKDPGPLGLHVDIYKDESTKEDNSPPLPPSFPPSLAFAPPPHPSSSSSSSSSPPPNPLCYGLIVIRSVSSDGAVARALPSLPPSLSPSLPTPRD-------------LQGATWIGLNGKSLRHVTIINVIPYVRRLPRPFNLHLRLPPSLPPSIRPTPPS-LPPSLTALSLHEADVQEAGGKEEGEEGGREGGATPPPYPATTFTFSGSSAGIRFRAWPTLQRGNVLLVSGF-----LAPSSPPSL-----SPAEASGKVSVGDVLLAINGVSTLTLSLPHTTSLLRDPSRPMTLTLGKASPDTLVELALPPALSSSLDSPFLDLDVALFRAPPSTFSSSPSSSSSVLCIVTGFRLTARGPLEASGKVKEGDRLVAVRGVKTAGREGGQQGRGE-EGFRRGVEMIGRLKPADFPVTLSFER----GREGGREGGKAVFDLVIQNPPLTRWGVVFGPSPPTEEEEKKENEEAGKKELGGGRQGGRGGGREVWPVVRAFQRLPGPAQRSGKIKTGMVLLQIN-------EEDVLEGVTEGGVVERVRRTTLPCSVMVRDMEVWTRMMAWRP 1119
            L  H+S L   L  ++ +SWPLLS L+GL LASLPPYT  D AAV+ AARLAALRQ PETQLARA  L    +EGGR+G  E    G ++ L I +PG LGL VDIYKDE+T E +S     SFPPS        PSSSSS+        LCYGLI+ R+V++ GAVA AL +LPPS  P LP                 L  A W+GLNGKSL H+T+ N++P VRRLPRPF LHLRLPP L  +    PP+ LPPS    +LH       G +E G+EG RE  A  PPYP T+FTFS  +AGIRF   PTL  G+ L V+GF     L PS PPSL     SPAE SG V++GD+L+A+N V TL LSLP TTSLL +P+RPMTL LGKA PD  + LAL PAL    D+  LDL VA F AP    S  PS   S LC+VTGF  TA+GPLEASG  + GD+L+AVRG    GREGG +G  +  GFR+GV ++  LK  DFPV L+FER    GRE G EGG+ VF++VI  PP+TRWGVVFG S P                 G G + GR GGREVWPV++AFQRLPGPAQRSGKIK GMVL+ +N        E   EG  EG +VERV+R  LPC+V VRDM+VWT+MMAWRP
Sbjct:   44 LPSHLS-LPPSLPPSLSSSWPLLSNLSGLDLASLPPYTEQDEAAVSRAARLAALRQSPETQLARAPLLDTGVDEGGREGGNE----GWLLTLTITEPGTLGLRVDIYKDENTMESDS-----SFPPSSL------PSSSSST--------LCYGLIMTRTVTTTGAVAHALLALPPSAFPPLPPSAPPAPVTTLHQRISLLSNAAWVGLNGKSLSHLTVTNIVPLVRRLPRPFTLHLRLPPPLSSAQDGLPPAFLPPS---FALH-----VEGSQEGGKEGRREDKAPLPPYPTTSFTFSEPAAGIRFHTHPTLLEGSALQVAGFGRPPSLPPSLPPSLPISLPSPAEVSGCVAIGDILMAVNNVPTLPLSLPQTTSLLHEPARPMTLALGKADPD--LNLALRPALPG--DTLELDLQVASFPAPSPPASLPPSLPPS-LCVVTGFVPTAQGPLEASGLCQVGDKLLAVRGEAAKGREGGGEGGTKGGGFRKGVALLQALKGEDFPVALTFERRTCEGREEGGEGGREVFEVVIPKPPVTRWGVVFGASVPE----------------GEGEEAGREGGREVWPVIKAFQRLPGPAQRSGKIKPGMVLVGVNGEGGEGGGEGRREGGREGEIVERVKRIRLPCTVTVRDMDVWTQMMAWRP 652

The following BLAST results are available for this feature:

BLAST of NO19G00580.3 vs.

BLAST of NO19G00580.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM23563.1	5.600e-153	53.78	PDZ domain protein [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO19G00580	NO19G00580	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO19G00580.3	NO19G00580.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO19G00580.3.cds1	NO19G00580.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00580.3.cds2	NO19G00580.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00580.3.cds3	NO19G00580.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00580.3.cds4	NO19G00580.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00580.3.cds5	NO19G00580.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00580.3.cds6	NO19G00580.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00580.3.cds7	NO19G00580.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO19G00580.3.cds8	NO19G00580.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr19:223548..228300+
coding sequence from alignment at chr19:223548..228300+

mRNA sequence

>NO19G00580.3 ID=NO19G00580.3|Name=NO19G00580.3|organism=Nannochloropsis oceanica|type=mRNA|length=3493bp
CCCTCCCTCCCACCTCCTCGGACCCCCCCCTCCCTCCCTCACGACATCTC
TGGGCCTCTCCCTCCTGGTGGAGACGGAGGCTAAGCTTAGAGGCCATTTC
TCAAACGTCCGAACTCTTGCCCAGGGGTTGAATAAAATGACTTTCAAGGG
CTTCACCGAGGAGGGCTTGAATCAGATGGAGTCAGCTCTAGTCATCCTCC
TTCGACTCCTGGAGGAACACCCCTTGATCCCTCCATTCCACTCCCCTTCC
TCCCTCCCGCCCTTCTCCTCCTCGTCCTCGGCAAGCCCGCCGTCAGACCT
GCCTTCCCTCCCTTCCTCTTCCTCCTCCTCCTCCCCCTCCCCTTCCTCCA
TCCCGGCCTCGATGTCGAAGATATCTCAACGGGTCCACAAGGGAGAGCTC
TCTCTATCCCAAGGCGTCAACCTGGTGCTGAAGGCGCTCGAGGCGGACGA
GAAGGAGGGAGAGAGGGATGGAGGGAGGGAAGGGGAGATGACGAAGATGG
TTGATAGGCTGCTGGGGCAGGGGGAGGCGATTCTGGACAAGATGGAGGCG
TTGAAGGAGCACCCTAAATTCCGCGGCGTCCTCCTCTCCATCCAAGAAAG
ACAAGATTCCAAAGCCTCCTACCCGGAAGAACAACTCTTCACGTACTTGG
AAGCGCTTGATCCTAACGCCCTCGTGCACCAGGTGGAGAGCGCCTGCCTC
GACAGCGACGCCCGAGCCACCCTTCTCCATGCCTTCACAGACCGCTCCCT
GTCCTTCCTTCTCGACTACCTACCTTCCCTCTCCATCCCTGTCCTGCAAG
GAATCACCGACGATCAAAGCACGGAGTACTCGATCGCCGATATGGACATG
AAGGGCTTCAAGCTGCGAAAGGAGGATGTCCGTGTCCACATAGCAGGCAT
CTCCTCCCCTCCTCCCTCTCGCCCTCCCTCTCTCGACCTCCTTGGGCGGA
CAGCAGCAACACCAGCCGTAGACACCTCCCTCCTTCTCCCCTCCACCTCC
TCCACCTCCTCCTCCACCTCCTCCTGCACCTCCTCCTTCAACTCTTCCTC
TATCTCCTCCTCCTCCTCGTCTGCTTCGAACGGAATCCCGACGCAGGACG
GAAAGTATTGCGGGGGGGGGGAAACGCTGGTAATCCAGGTGTCAAATCTG
TCCGCGGATTTCAGTCGACTCAAGTGGGCATACAAACAGCTCTTCTTCCC
TTACTTGAAGGGTGAGGGACTGGCCGATGCCAAAGTCGTCAACGGGAGCA
TCCACTTGGGTTTCCTCCTGAAAAAACGTCCCATCCCCTCCTCCTCCACC
TCCTCCTCCTCTTCTATCCTCCCCTCCTCCTCCTCCTCCTCCCTCGTGCC
TCCCTCCTCCTCCAAACCCATGGAAGAAACCACGGAGAAGACGGCCAGGA
GAAAGGAGAAAGACGAGAAGGAGAAGGAGGACGAGGAGGGCAGGGAAGAG
GAGGAGGTAGAGCCCATCATAGTCCTCTCCTCCTGCCTCGTCAGTATCGA
GAAGCTGGACATTCAGTGCGGGGAGGTAGGGGGAGGCTTAGCCTGGCTCT
ACAACCTCCTCGTCACACTAGCGGCATCAACCATCAAGGACGGCGTTGTC
GCGAAGCTCACAGACGTGCTGATGGACCACATGAGCGACTTGCTAGGGAT
GCTTAATGAGGCGGTTAGGACATCTTGGCCCCTCCTATCCCGTCTTACGG
GGCTCAAGCTCGCCTCCCTCCCCCCCTACACGGCTGCTGATGCTGCTGCT
GTTGCTGCTGCTGCTCGACTCGCTGCCCTCCGCCAGCCCCCTGAGACGCA
GCTCGCCCGGGCCTTGCCTGTGGAGAAGGAGGAGGGAGGGAGGGACGGAC
GGACGGAGGAAAGGAAGGAGGGGCAGATCATTGCCCTTGAGATCAAGGAC
CCCGGCCCATTGGGTTTGCACGTGGACATCTACAAAGACGAAAGCACGAA
GGAAGATAATTCTCCTCCCTTACCGCCCTCCTTCCCTCCCTCCCTTGCTT
TTGCCCCGCCCCCCCACCCCTCCTCCTCTTCCTCCTCCTCGTCTTCCCCC
CCTCCCAACCCGCTCTGCTACGGCCTCATTGTCATCCGGAGCGTCTCCTC
CGACGGAGCAGTCGCCCGTGCCCTTCCCTCCCTCCCTCCCTCCCTCTCTC
CCTCCCTCCCCACCCCTCGAGACTTGCAAGGCGCTACCTGGATCGGACTT
AACGGCAAATCTCTTCGTCATGTCACCATTATCAATGTCATACCTTATGT
CCGACGCCTCCCCCGACCCTTCAACCTCCATCTCCGCCTCCCTCCCTCCC
TCCCTCCATCCATCCGTCCCACTCCTCCCTCCCTCCCTCCCTCCCTCACT
GCCTTGTCCTTGCACGAAGCAGACGTCCAGGAGGCGGGAGGGAAAGAGGA
AGGGGAGGAGGGAGGGAGGGAGGGAGGGGCAACGCCTCCCCCTTACCCAG
CCACCACCTTTACATTCTCCGGGTCATCTGCTGGCATTCGCTTTCGGGCC
TGGCCCACCTTGCAACGAGGCAACGTCCTCCTCGTCTCTGGCTTTCTCGC
CCCCTCCTCTCCCCCCTCCCTCTCCCCTGCGGAAGCTTCTGGAAAGGTTT
CCGTTGGTGACGTGCTGCTGGCGATCAACGGCGTCTCCACCCTCACTCTC
TCCCTCCCCCACACCACCTCCCTCCTACGCGATCCCTCTCGACCAATGAC
CCTCACCCTCGGCAAGGCCAGCCCTGACACCCTCGTAGAGCTCGCCCTTC
CTCCCGCCCTCTCTTCCTCCCTGGACTCTCCCTTTCTCGACTTGGACGTG
GCATTGTTCCGTGCCCCTCCCTCGACCTTCTCCTCCTCCCCCTCTTCCTC
CTCCTCCGTGCTGTGCATAGTGACAGGCTTTCGTCTCACAGCCCGAGGGC
CCCTGGAGGCATCAGGAAAAGTGAAAGAAGGAGACAGATTGGTGGCGGTG
AGGGGGGTGAAGACGGCAGGGAGGGAAGGAGGGCAGCAAGGGAGGGGGGA
GGAAGGGTTCAGGAGGGGGGTTGAAATGATTGGTAGGTTGAAGCCGGCTG
ATTTTCCAGTCACGTTGTCATTTGAACGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAAGGCAGTGTTTGATCTGGTGATTCAGAATCCTCCTTTGACGAG
ATGGGGCGTCGTTTTTGGCCCTTCTCCACCGACGGAGGAGGAGGAGAAAA
AGGAGAACGAAGAGGCAGGAAAAAAGGAGCTGGGAGGAGGGAGGCAGGGA
GGGAGGGGGGGAGGGAGGGAGGTCTGGCCCGTGGTACGAGCTTTCCAACG
ATTGCCCGGCCCGGCGCAACGCAGTGGGAAGATCAAAACAGGGATGGTGT
TGCTGCAAATTAACGAGGAGGATGTGCTGGAGGGAGTGACCGAGGGAGGG
GTGGTGGAGAGGGTGCGAAGGACGACGTTGCCTTGCTCGGTGATGGTAAG
GGATATGGAGGTGTGGACGAGGATGATGGCCTGGAGGCCGTAG

protein sequence of NO19G00580.3

>NO19G00580.3-protein ID=NO19G00580.3-protein|Name=NO19G00580.3|organism=Nannochloropsis oceanica|type=polypeptide|length=1119bp
MTFKGFTEEGLNQMESALVILLRLLEEHPLIPPFHSPSSLPPFSSSSSAS
PPSDLPSLPSSSSSSSPSPSSIPASMSKISQRVHKGELSLSQGVNLVLKA
LEADEKEGERDGGREGEMTKMVDRLLGQGEAILDKMEALKEHPKFRGVLL
SIQERQDSKASYPEEQLFTYLEALDPNALVHQVESACLDSDARATLLHAF
TDRSLSFLLDYLPSLSIPVLQGITDDQSTEYSIADMDMKGFKLRKEDVRV
HIAGISSPPPSRPPSLDLLGRTAATPAVDTSLLLPSTSSTSSSTSSCTSS
FNSSSISSSSSSASNGIPTQDGKYCGGGETLVIQVSNLSADFSRLKWAYK
QLFFPYLKGEGLADAKVVNGSIHLGFLLKKRPIPSSSTSSSSSILPSSSS
SSLVPPSSSKPMEETTEKTARRKEKDEKEKEDEEGREEEEVEPIIVLSSC
LVSIEKLDIQCGEVGGGLAWLYNLLVTLAASTIKDGVVAKLTDVLMDHMS
DLLGMLNEAVRTSWPLLSRLTGLKLASLPPYTAADAAAVAAAARLAALRQ
PPETQLARALPVEKEEGGRDGRTEERKEGQIIALEIKDPGPLGLHVDIYK
DESTKEDNSPPLPPSFPPSLAFAPPPHPSSSSSSSSSPPPNPLCYGLIVI
RSVSSDGAVARALPSLPPSLSPSLPTPRDLQGATWIGLNGKSLRHVTIIN
VIPYVRRLPRPFNLHLRLPPSLPPSIRPTPPSLPPSLTALSLHEADVQEA
GGKEEGEEGGREGGATPPPYPATTFTFSGSSAGIRFRAWPTLQRGNVLLV
SGFLAPSSPPSLSPAEASGKVSVGDVLLAINGVSTLTLSLPHTTSLLRDP
SRPMTLTLGKASPDTLVELALPPALSSSLDSPFLDLDVALFRAPPSTFSS
SPSSSSSVLCIVTGFRLTARGPLEASGKVKEGDRLVAVRGVKTAGREGGQ
QGRGEEGFRRGVEMIGRLKPADFPVTLSFERGREGGREGGKAVFDLVIQN
PPLTRWGVVFGPSPPTEEEEKKENEEAGKKELGGGRQGGRGGGREVWPVV
RAFQRLPGPAQRSGKIKTGMVLLQINEEDVLEGVTEGGVVERVRRTTLPC
SVMVRDMEVWTRMMAWRP*

mRNA from alignment at chr19:223548..228300+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO19G00580.3 ID=NO19G00580.3|Name=NO19G00580.3|organism=Nannochloropsis oceanica|type=mRNA|length=4753bp|location=Sequence derived from alignment at chr19:223548..228300+ (Nannochloropsis oceanica)
CCCTCCCTCCCACCTCCTCGGACCCCCCCCTCCCTCCCTCACGACATCTC
TGGGCCTCTCCCTCCTGGTGGAGACGGAGGCTAAGCTTAGAGGCCATTTC
TCAAACGTCCGAACTCTTGCCCAGGGGTTGAATAAAATGACTTTCAAGGT
AAGCACCTCCCTCCCTCCTTCCTTCCCTCCCTCCCTCTCTCCCTCCCTCC
CTCCCTCCTTCCCTCTTTCCCTCCTTCCTCCCATGTCTGACAACCAAGCA
CCCATTTCCCCTCCTCCTGTTCGTCCCCCCCTCCTTCCTTCCCTCCCTCC
CTCCCTCCCTCCCTCTCTCCCTCCCTCTCTCCCTCCAGAGATCCGCCAAA
AAAACGCTCGGTCAGCCTCCTCAATCTCTCTGCCCCCCTCCCCCCTCCCT
CCCCCCTCCCACCTTTCAGGGCTTCACCGAGGAGGGCTTGAATCAGATGG
AGTCAGCTCTAGTCATCCTCCTTCGACTCCTGGAGGAACACCCCTTGATC
CCTCCATTCCACTCCCCTTCCTCCCTCCCGCCCTTCTCCTCCTCGTCCTC
GGCAAGCCCGCCGTCAGACCTGCCTTCCCTCCCTTCCTCTTCCTCCTCCT
CCTCCCCCTCCCCTTCCTCCATCCCGGCCTCGATGTCGAAGATATCTCAA
CGGGTCCACAAGGGAGAGCTCTCTCTATCCCAAGGCGTCAACCTGGTGCT
GAAGGCGCTCGAGGCGGACGAGAAGGAGGGAGAGAGGGATGGAGGGAGGG
AAGGGGAGATGACGAAGATGGTTGATAGGCTGCTGGGGCAGGGGGAGGCG
ATTCTGGACAAGATGGAGGCGTTGAAGGAGCACCCTAAATGTGAGGAGGG
AGGGAGGGAGGGAAGGAGGGGGGGAGAGGGAAGTAGAAAGGTGGGTTGTT
TATGAGGGGGGATAATCGTTGACAAGATGAAGGCGTTGAAGGAGAGCCAT
CACCCCACAATTTAAAAAAATATTAAGCACCGGATGTCCCTCCCTCCCTC
CCTTCCTCCCTCCCTCCTCCCCTCCCCAGTCCGCGGCGTCCTCCTCTCCA
TCCAAGAAAGACAAGATTCCAAAGCCTCCTACCCGGAAGAACAACTCTTC
ACGTACTTGGAAGCGCTTGATCCTAACGCCCTCGTGCACCAGGTACCTTC
CCTCCCTCCCTCTCCCCCTTCCTCCCTCCCCTCCTTCCTTCCCAGCCTCT
TTTGCTCGGCCGTTGAGAAATCCACACGCGTCACCTCTCCTTTCCTCCCT
CCCTCCTCGCCCTAGGTGGAGAGCGCCTGCCTCGACAGCGACGCCCGAGC
CACCCTTCTCCATGCCTTCACAGACCGCTCCCTGTCCTTCCTTCTCGACT
ACCTACCTTCCCTCTCCATCCCTGTCCTGCAAGGAATCACCGACGTGAGC
CCTCTTTCCCTCCCTCATCCCTTCCCTCTTCTCTCGTCACTTCCCGCATT
TTCATTTGCTGACCACACCCTCTCCCTCCCTCCCTACGTTAGGATCAAAG
CACGGAGTACTCGATCGCCGATATGGACATGAAGGGCTTCAAGCTGCGAA
AGGTCAGGATGAGAAAAGGGAGGAAGGGAGGGAGCGAGCGCGCGGGGGAG
AAGGGAAAGCCGGCGAAAAATGACGCGGCAGATTTTCGACGAAGAAGCGA
GGGAGGGAGGGAGAGAGGGAGGGAGGGAGAAAGGGAGGGAGGGAGGGAGG
GAAGGAGGGAGACAGAGAAGAGAGAATAGACGGAAAGGACTTTAAAGAAG
GCTTACATCTCCCCCTCTCCCTTCTTCCCTCCCTCCCCATCACACTACAG
GAGGATGTCCGTGTCCACATAGCAGGCATCTCCTCCCCTCCTCCCTCTCG
CCCTCCCTCTCTCGACCTCCTTGGGCGGACAGCAGCAACACCAGCCGTAG
ACACCTCCCTCCTTCTCCCCTCCACCTCCTCCACCTCCTCCTCCACCTCC
TCCTGCACCTCCTCCTTCAACTCTTCCTCTATCTCCTCCTCCTCCTCGTC
TGCTTCGAACGGAATCCCGACGCAGGACGGAAAGTATTGCGGGGGGGGGG
AAACGCTGGTAATCCAGGTGTCAAATCTGTCCGCGGATTTCAGTCGACTC
AAGTGGGCATACAAACAGCTCTTCTTCCCTTACTTGAAGGTCAGGCCGCC
TTTCCCTCCTCCCTCAATATGCCACCCCCTTCTCTCTTGCCTTATGACCC
ACCTCTCCTCCTTCCCTCCCTTCTTCACTGGGAAGGTCTGTCCAAGGCCC
AGGCCCCCACCGGAGGCTTCAACCTCACCTTCCCCTTCTCCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCTCTAGGGTGAGGGACTGGCCGATGCCAAAGT
CGTCAACGGGAGCATCCACTTGGGTTTCCTCCTGAAAAAACGTCCCATCC
CCTCCTCCTCCACCTCCTCCTCCTCTTCTATCCTCCCCTCCTCCTCCTCC
TCCTCCCTCGTGCCTCCCTCCTCCTCCAAACCCATGGAAGAAACCACGGA
GAAGACGGCCAGGAGAAAGGAGAAAGACGAGAAGGAGAAGGAGGACGAGG
AGGGCAGGGAAGAGGAGGAGGTAGAGCCCATCATAGTCCTCTCCTCCTGC
CTCGTCAGTATCGAGAAGCTGGACATTCAGTGCGGGGAGGTAGGGGGAGG
CTTAGCCTGGCTCTACAACCTCCTCGTCACACTAGCGGCATCAACCATCA
AGGACGGCGTTGTCGCGAAGCTCACAGACGTGCTGATGGACCACATGAGC
GACTTGCTAGGGATGCTTAATGAGGCGGTTAGGTGCGCGCCCTCCCTCCC
TCGCTTCCTCCCTCCCTTGGTCGTTTCCACCCTCCTAATTCTCTAGTTGC
AGCTGTTGCCATTGTTCTCGCTCCCACTCTGCCCTCCTTCTCTTCCTCCC
TCCCTCCTTCCCTCCCTCCCTCCCTCAGGACATCTTGGCCCCTCCTATCC
CGTCTTACGGGGCTCAAGCTCGCCTCCCTCCCCCCCTACACGGCTGCTGA
TGCTGCTGCTGTTGCTGCTGCTGCTCGACTCGCTGCCCTCCGCCAGCCCC
CTGAGACGCAGCTCGCCCGGGCCTTGCCTGTGGAGAAGGAGGAGGGAGGG
AGGGACGGACGGACGGAGGAAAGGAAGGAGGGGCAGATCATTGCCCTTGA
GATCAAGGACCCCGGCCCATTGGGTTTGCACGTGGACATCTACAAAGACG
AAAGCACGAAGGAAGATAATTCTCCTCCCTTACCGCCCTCCTTCCCTCCC
TCCCTTGCTTTTGCCCCGCCCCCCCACCCCTCCTCCTCTTCCTCCTCCTC
GTCTTCCCCCCCTCCCAACCCGCTCTGCTACGGCCTCATTGTCATCCGGA
GCGTCTCCTCCGACGGAGCAGTCGCCCGTGCCCTTCCCTCCCTCCCTCCC
TCCCTCTCTCCCTCCCTCCCCACCCCTCGAGACTTGCAAGGCGCTACCTG
GATCGGACTTAACGGCAAATCTCTTCGTCATGTCACCATTATCAATGTCA
TACCTTATGTCCGACGCCTCCCCCGACCCTTCAACCTCCATCTCCGCCTC
CCTCCCTCCCTCCCTCCATCCATCCGTCCCACTCCTCCCTCCCTCCCTCC
CTCCCTCACTGCCTTGTCCTTGCACGAAGCAGACGTCCAGGAGGCGGGAG
GGAAAGAGGAAGGGGAGGAGGGAGGGAGGGAGGGAGGGGCAACGCCTCCC
CCTTACCCAGCCACCACCTTTACATTCTCCGGGTCATCTGCTGGCATTCG
CTTTCGGGCCTGGCCCACCTTGCAACGAGGCAACGTCCTCCTCGTCTCTG
GCTTTCTCGCCCCCTCCTCTCCCCCCTCCCTCTCCCCTGCGGAAGCTTCT
GGAAAGGTTTCCGTTGGTGACGTGCTGCTGGCGATCAACGGCGTCTCCAC
CCTCACTCTCTCCCTCCCCCACACCACCTCCCTCCTACGCGATCCCTCTC
GACCAATGACCCTCACCCTCGGCAAGGCCAGCCCTGACACCCTCGTAGAG
CTCGCCCTTCCTCCCGCCCTCTCTTCCTCCCTGGACTCTCCCTTTCTCGA
CTTGGACGTGGCATTGTTCCGTGCCCCTCCCTCGACCTTCTCCTCCTCCC
CCTCTTCCTCCTCCTCCGTGCTGTGCATAGTGACAGGCTTTCGTCTCACA
GCCCGAGGGCCCCTGGAGGCATCAGGAAAAGTGAAAGAAGGAGACAGATT
GGTGGCGGTGAGGGGGGTGAAGACGGCAGGGAGGGAAGGAGGGCAGCAAG
GGAGGGGGGAGGAAGGGTTCAGGAGGGGGGTTGAAATGATTGGTAGGTTG
AAGCCGGCTGATTTTCCAGTCACGTTGTCATTTGAACGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAAGGCAGTGTTTGATCTGGTGATTCAGAATCCTC
CTTTGACGAGATGGGGCGTCGTTTTTGGCCCTTCTCCACCGACGGAGGAG
GAGGAGAAAAAGGAGAACGAAGAGGCAGGAAAAAAGGAGCTGGGAGGAGG
GAGGCAGGGAGGGAGGGGGGGAGGGAGGGAGGTCTGGCCCGTGGTACGAG
CTTTCCAACGATTGCCCGGCCCGGCGCAACGCAGTGGGAAGATCAAAACA
GGGATGGTGTTGCTGCAAATTAACGAGGAGGATGTGCTGGAGGGAGTGAC
CGAGGGAGGGGTGGTGGAGAGGGTGCGAAGGACGACGTTGCCTTGCTCGG
TGATGGTAAGGGATATGGAGGTGTGGACGAGGATGATGGCCTGGAGGCCG
TAG

Coding sequence (CDS) from alignment at chr19:223548..228300+

>NO19G00580.3 ID=NO19G00580.3|Name=NO19G00580.3|organism=Nannochloropsis oceanica|type=CDS|length=3357bp|location=Sequence derived from alignment at chr19:223548..228300+ (Nannochloropsis oceanica)
ATGACTTTCAAGGGCTTCACCGAGGAGGGCTTGAATCAGATGGAGTCAGC
TCTAGTCATCCTCCTTCGACTCCTGGAGGAACACCCCTTGATCCCTCCAT
TCCACTCCCCTTCCTCCCTCCCGCCCTTCTCCTCCTCGTCCTCGGCAAGC
CCGCCGTCAGACCTGCCTTCCCTCCCTTCCTCTTCCTCCTCCTCCTCCCC
CTCCCCTTCCTCCATCCCGGCCTCGATGTCGAAGATATCTCAACGGGTCC
ACAAGGGAGAGCTCTCTCTATCCCAAGGCGTCAACCTGGTGCTGAAGGCG
CTCGAGGCGGACGAGAAGGAGGGAGAGAGGGATGGAGGGAGGGAAGGGGA
GATGACGAAGATGGTTGATAGGCTGCTGGGGCAGGGGGAGGCGATTCTGG
ACAAGATGGAGGCGTTGAAGGAGCACCCTAAATTCCGCGGCGTCCTCCTC
TCCATCCAAGAAAGACAAGATTCCAAAGCCTCCTACCCGGAAGAACAACT
CTTCACGTACTTGGAAGCGCTTGATCCTAACGCCCTCGTGCACCAGGTGG
AGAGCGCCTGCCTCGACAGCGACGCCCGAGCCACCCTTCTCCATGCCTTC
ACAGACCGCTCCCTGTCCTTCCTTCTCGACTACCTACCTTCCCTCTCCAT
CCCTGTCCTGCAAGGAATCACCGACGATCAAAGCACGGAGTACTCGATCG
CCGATATGGACATGAAGGGCTTCAAGCTGCGAAAGGAGGATGTCCGTGTC
CACATAGCAGGCATCTCCTCCCCTCCTCCCTCTCGCCCTCCCTCTCTCGA
CCTCCTTGGGCGGACAGCAGCAACACCAGCCGTAGACACCTCCCTCCTTC
TCCCCTCCACCTCCTCCACCTCCTCCTCCACCTCCTCCTGCACCTCCTCC
TTCAACTCTTCCTCTATCTCCTCCTCCTCCTCGTCTGCTTCGAACGGAAT
CCCGACGCAGGACGGAAAGTATTGCGGGGGGGGGGAAACGCTGGTAATCC
AGGTGTCAAATCTGTCCGCGGATTTCAGTCGACTCAAGTGGGCATACAAA
CAGCTCTTCTTCCCTTACTTGAAGGGTGAGGGACTGGCCGATGCCAAAGT
CGTCAACGGGAGCATCCACTTGGGTTTCCTCCTGAAAAAACGTCCCATCC
CCTCCTCCTCCACCTCCTCCTCCTCTTCTATCCTCCCCTCCTCCTCCTCC
TCCTCCCTCGTGCCTCCCTCCTCCTCCAAACCCATGGAAGAAACCACGGA
GAAGACGGCCAGGAGAAAGGAGAAAGACGAGAAGGAGAAGGAGGACGAGG
AGGGCAGGGAAGAGGAGGAGGTAGAGCCCATCATAGTCCTCTCCTCCTGC
CTCGTCAGTATCGAGAAGCTGGACATTCAGTGCGGGGAGGTAGGGGGAGG
CTTAGCCTGGCTCTACAACCTCCTCGTCACACTAGCGGCATCAACCATCA
AGGACGGCGTTGTCGCGAAGCTCACAGACGTGCTGATGGACCACATGAGC
GACTTGCTAGGGATGCTTAATGAGGCGGTTAGGACATCTTGGCCCCTCCT
ATCCCGTCTTACGGGGCTCAAGCTCGCCTCCCTCCCCCCCTACACGGCTG
CTGATGCTGCTGCTGTTGCTGCTGCTGCTCGACTCGCTGCCCTCCGCCAG
CCCCCTGAGACGCAGCTCGCCCGGGCCTTGCCTGTGGAGAAGGAGGAGGG
AGGGAGGGACGGACGGACGGAGGAAAGGAAGGAGGGGCAGATCATTGCCC
TTGAGATCAAGGACCCCGGCCCATTGGGTTTGCACGTGGACATCTACAAA
GACGAAAGCACGAAGGAAGATAATTCTCCTCCCTTACCGCCCTCCTTCCC
TCCCTCCCTTGCTTTTGCCCCGCCCCCCCACCCCTCCTCCTCTTCCTCCT
CCTCGTCTTCCCCCCCTCCCAACCCGCTCTGCTACGGCCTCATTGTCATC
CGGAGCGTCTCCTCCGACGGAGCAGTCGCCCGTGCCCTTCCCTCCCTCCC
TCCCTCCCTCTCTCCCTCCCTCCCCACCCCTCGAGACTTGCAAGGCGCTA
CCTGGATCGGACTTAACGGCAAATCTCTTCGTCATGTCACCATTATCAAT
GTCATACCTTATGTCCGACGCCTCCCCCGACCCTTCAACCTCCATCTCCG
CCTCCCTCCCTCCCTCCCTCCATCCATCCGTCCCACTCCTCCCTCCCTCC
CTCCCTCCCTCACTGCCTTGTCCTTGCACGAAGCAGACGTCCAGGAGGCG
GGAGGGAAAGAGGAAGGGGAGGAGGGAGGGAGGGAGGGAGGGGCAACGCC
TCCCCCTTACCCAGCCACCACCTTTACATTCTCCGGGTCATCTGCTGGCA
TTCGCTTTCGGGCCTGGCCCACCTTGCAACGAGGCAACGTCCTCCTCGTC
TCTGGCTTTCTCGCCCCCTCCTCTCCCCCCTCCCTCTCCCCTGCGGAAGC
TTCTGGAAAGGTTTCCGTTGGTGACGTGCTGCTGGCGATCAACGGCGTCT
CCACCCTCACTCTCTCCCTCCCCCACACCACCTCCCTCCTACGCGATCCC
TCTCGACCAATGACCCTCACCCTCGGCAAGGCCAGCCCTGACACCCTCGT
AGAGCTCGCCCTTCCTCCCGCCCTCTCTTCCTCCCTGGACTCTCCCTTTC
TCGACTTGGACGTGGCATTGTTCCGTGCCCCTCCCTCGACCTTCTCCTCC
TCCCCCTCTTCCTCCTCCTCCGTGCTGTGCATAGTGACAGGCTTTCGTCT
CACAGCCCGAGGGCCCCTGGAGGCATCAGGAAAAGTGAAAGAAGGAGACA
GATTGGTGGCGGTGAGGGGGGTGAAGACGGCAGGGAGGGAAGGAGGGCAG
CAAGGGAGGGGGGAGGAAGGGTTCAGGAGGGGGGTTGAAATGATTGGTAG
GTTGAAGCCGGCTGATTTTCCAGTCACGTTGTCATTTGAACGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAAGGCAGTGTTTGATCTGGTGATTCAGAAT
CCTCCTTTGACGAGATGGGGCGTCGTTTTTGGCCCTTCTCCACCGACGGA
GGAGGAGGAGAAAAAGGAGAACGAAGAGGCAGGAAAAAAGGAGCTGGGAG
GAGGGAGGCAGGGAGGGAGGGGGGGAGGGAGGGAGGTCTGGCCCGTGGTA
CGAGCTTTCCAACGATTGCCCGGCCCGGCGCAACGCAGTGGGAAGATCAA
AACAGGGATGGTGTTGCTGCAAATTAACGAGGAGGATGTGCTGGAGGGAG
TGACCGAGGGAGGGGTGGTGGAGAGGGTGCGAAGGACGACGTTGCCTTGC
TCGGTGATGGTAAGGGATATGGAGGTGTGGACGAGGATGATGGCCTGGAG
GCCGTAG

Synonyms

Publications